Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 ZNF677-201ENST00000333952 3422 ntAPPRIS P1 TSL 2 BASIC5.56□□□□□ -1.52
PCDH9Q9HC56 DAZ4-205ENST00000440066 1891 ntTSL 5 BASIC5.56□□□□□ -1.52
PCDH9Q9HC56 DAZ1-206ENST00000620725 1891 ntTSL 5 BASIC5.56□□□□□ -1.52
PCDH9Q9HC56 KTN1-202ENST00000395308 4134 ntAPPRIS ALT2 TSL 1 (best) BASIC5.55□□□□□ -1.52
PCDH9Q9HC56 AC083899.2-201ENST00000423285 1376 ntBASIC5.55□□□□□ -1.52
PCDH9Q9HC56 ZNF678-201ENST00000343776 8556 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
PCDH9Q9HC56 ERVW-1-201ENST00000493463 2925 ntAPPRIS P1 BASIC5.55□□□□□ -1.52
PCDH9Q9HC56 CCDC178-209ENST00000579947 2925 ntAPPRIS ALT2 TSL 1 (best) BASIC5.55□□□□□ -1.52
PCDH9Q9HC56 EFCAB5-201ENST00000394835 5132 ntAPPRIS P2 TSL 1 (best) BASIC5.55□□□□□ -1.52
PCDH9Q9HC56 STXBP4-203ENST00000405898 2229 ntTSL 5 BASIC5.55□□□□□ -1.52
PCDH9Q9HC56 GJA9-201ENST00000357771 1799 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
PCDH9Q9HC56 NHSL2-204ENST00000631375 12593 ntTSL 5 BASIC5.55□□□□□ -1.52
PCDH9Q9HC56 EPPIN-202ENST00000354280 1987 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
PCDH9Q9HC56 STAU2-210ENST00000521210 1950 ntTSL 2 BASIC5.55□□□□□ -1.52
PCDH9Q9HC56 B3GALT2-201ENST00000367434 3274 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
PCDH9Q9HC56 MAMDC2-AS1-201ENST00000377178 1504 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
PCDH9Q9HC56 AC068446.1-201ENST00000556425 1549 ntBASIC5.55□□□□□ -1.52
PCDH9Q9HC56 SMNDC1-202ENST00000369603 4341 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
PCDH9Q9HC56 SRSF11-201ENST00000370949 3034 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
PCDH9Q9HC56 OR51Q1-201ENST00000300778 1096 ntAPPRIS P1 BASIC5.55□□□□□ -1.52
PCDH9Q9HC56 OR9G4-201ENST00000302957 984 ntBASIC5.55□□□□□ -1.52
PCDH9Q9HC56 OR9K1P-201ENST00000326513 941 ntBASIC5.55□□□□□ -1.52
PCDH9Q9HC56 MIR323A-201ENST00000362199 86 ntBASIC5.55□□□□□ -1.52
PCDH9Q9HC56 RNU1-19P-201ENST00000363306 165 ntBASIC5.55□□□□□ -1.52
PCDH9Q9HC56 RNA5SP242-201ENST00000364171 118 ntBASIC5.55□□□□□ -1.52
PCDH9Q9HC56 RN7SKP124-201ENST00000364730 341 ntBASIC5.55□□□□□ -1.52
PCDH9Q9HC56 LINC00474-201ENST00000374014 769 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
PCDH9Q9HC56 COX5BP7-201ENST00000414780 274 ntBASIC5.55□□□□□ -1.52
PCDH9Q9HC56 Z93019.1-201ENST00000416450 973 ntBASIC5.55□□□□□ -1.52
PCDH9Q9HC56 RPSAP39-201ENST00000467439 883 ntBASIC5.55□□□□□ -1.52
PCDH9Q9HC56 AC078828.1-201ENST00000471993 458 ntTSL 3 BASIC5.55□□□□□ -1.52
PCDH9Q9HC56 VN1R5-201ENST00000472952 1239 ntAPPRIS P1 BASIC5.55□□□□□ -1.52
PCDH9Q9HC56 C21orf62-202ENST00000479548 964 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
PCDH9Q9HC56 RPL15P21-201ENST00000495592 567 ntBASIC5.55□□□□□ -1.52
PCDH9Q9HC56 LINC01339-201ENST00000505712 440 ntTSL 2 BASIC5.55□□□□□ -1.52
PCDH9Q9HC56 KCTD9P6-201ENST00000522306 950 ntBASIC5.55□□□□□ -1.52
PCDH9Q9HC56 AP003086.3-201ENST00000527030 365 ntTSL 3 BASIC5.55□□□□□ -1.52
PCDH9Q9HC56 OR4A46P-201ENST00000527255 933 ntBASIC5.55□□□□□ -1.52
PCDH9Q9HC56 OR4R2P-201ENST00000530815 597 ntBASIC5.55□□□□□ -1.52
PCDH9Q9HC56 CLMN-206ENST00000556441 452 ntTSL 5 BASIC5.55□□□□□ -1.52
PCDH9Q9HC56 LINC00557-201ENST00000563184 1279 ntBASIC5.55□□□□□ -1.52
PCDH9Q9HC56 AC005774.1-201ENST00000565247 567 ntTSL 4 BASIC5.55□□□□□ -1.52
PCDH9Q9HC56 AC106730.2-201ENST00000566641 540 ntBASIC5.55□□□□□ -1.52
PCDH9Q9HC56 MTND4LP25-201ENST00000570218 163 ntBASIC5.55□□□□□ -1.52
PCDH9Q9HC56 SNORD95-201ENST00000579879 68 ntBASIC5.55□□□□□ -1.52
PCDH9Q9HC56 AP005242.1-201ENST00000583946 467 ntTSL 3 BASIC5.55□□□□□ -1.52
PCDH9Q9HC56 FAM60CP-201ENST00000591086 664 ntBASIC5.55□□□□□ -1.52
PCDH9Q9HC56 AC008764.5-201ENST00000597851 190 ntTSL 5 BASIC5.55□□□□□ -1.52
PCDH9Q9HC56 AP000240.1-201ENST00000609910 452 ntBASIC5.55□□□□□ -1.52
PCDH9Q9HC56 AL512506.1-201ENST00000613918 449 ntBASIC5.55□□□□□ -1.52
PCDH9Q9HC56 AC004477.3-201ENST00000614061 590 ntBASIC5.55□□□□□ -1.52
PCDH9Q9HC56 AC009032.1-201ENST00000617574 431 ntBASIC5.55□□□□□ -1.52
PCDH9Q9HC56 AP003400.3-201ENST00000624904 346 ntBASIC5.55□□□□□ -1.52
PCDH9Q9HC56 C8orf89-203ENST00000625134 507 ntAPPRIS ALT2 TSL 1 (best) BASIC5.55□□□□□ -1.52
PCDH9Q9HC56 AC097495.1-201ENST00000637675 546 ntAPPRIS P1 TSL 5 BASIC5.55□□□□□ -1.52
PCDH9Q9HC56 OR51Q1-202ENST00000641085 1096 ntAPPRIS P1 BASIC5.55□□□□□ -1.52
PCDH9Q9HC56 TRPM6-203ENST00000361255 8271 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
PCDH9Q9HC56 TRAPPC13-201ENST00000231526 2715 ntAPPRIS ALT1 TSL 5 BASIC5.55□□□□□ -1.52
PCDH9Q9HC56 AC091045.1-201ENST00000561460 2277 ntTSL 5 BASIC5.55□□□□□ -1.52
PCDH9Q9HC56 POF1B-201ENST00000262753 3941 ntAPPRIS P3 TSL 1 (best) BASIC5.55□□□□□ -1.52
PCDH9Q9HC56 PHACTR2P1-201ENST00000605639 1414 ntBASIC5.55□□□□□ -1.52
PCDH9Q9HC56 SAMSN1-206ENST00000619120 2028 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
PCDH9Q9HC56 PIGN-241ENST00000640050 3154 ntAPPRIS P1 TSL 5 BASIC5.55□□□□□ -1.52
PCDH9Q9HC56 SLC15A2-201ENST00000295605 2379 ntTSL 2 BASIC5.55□□□□□ -1.52
PCDH9Q9HC56 CASC19-201ENST00000500112 5735 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
PCDH9Q9HC56 PRUNE2-207ENST00000428286 12437 ntTSL 5 BASIC5.55□□□□□ -1.52
PCDH9Q9HC56 PTPRC-209ENST00000442510 5164 ntAPPRIS P4 TSL 1 (best) BASIC5.54□□□□□ -1.52
PCDH9Q9HC56 TMLHE-AS1-201ENST00000433624 1702 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
PCDH9Q9HC56 RRP15-201ENST00000366932 7771 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
PCDH9Q9HC56 NFKBIZ-203ENST00000394054 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC5.54□□□□□ -1.52
PCDH9Q9HC56 SLFN13-201ENST00000285013 8469 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
PCDH9Q9HC56 OR5AN1-203ENST00000641998 7647 ntAPPRIS P1 BASIC5.54□□□□□ -1.52
PCDH9Q9HC56 RFC3-202ENST00000434425 1461 ntTSL 5 BASIC5.54□□□□□ -1.52
PCDH9Q9HC56 CLEC7A-203ENST00000310002 425 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
PCDH9Q9HC56 RNA5SP319-201ENST00000362768 119 ntBASIC5.54□□□□□ -1.52
PCDH9Q9HC56 RNA5SP435-201ENST00000364044 108 ntBASIC5.54□□□□□ -1.52
PCDH9Q9HC56 MRRF-203ENST00000373723 1176 ntTSL 3 BASIC5.54□□□□□ -1.52
PCDH9Q9HC56 AL391422.1-201ENST00000402155 436 ntBASIC5.54□□□□□ -1.52
PCDH9Q9HC56 AL590609.3-201ENST00000411815 210 ntTSL 3 BASIC5.54□□□□□ -1.52
PCDH9Q9HC56 RPL12P9-201ENST00000412942 488 ntBASIC5.54□□□□□ -1.52
PCDH9Q9HC56 LINC00308-201ENST00000419431 727 ntTSL 5 BASIC5.54□□□□□ -1.52
PCDH9Q9HC56 RPL12P43-201ENST00000420608 499 ntBASIC5.54□□□□□ -1.52
PCDH9Q9HC56 LINC02518-201ENST00000421737 524 ntTSL 3 BASIC5.54□□□□□ -1.52
PCDH9Q9HC56 AC013410.2-201ENST00000422627 201 ntBASIC5.54□□□□□ -1.52
PCDH9Q9HC56 AC017002.1-201ENST00000432268 881 ntTSL 5 BASIC5.54□□□□□ -1.52
PCDH9Q9HC56 AC012075.1-201ENST00000436549 580 ntBASIC5.54□□□□□ -1.52
PCDH9Q9HC56 LINC01344-202ENST00000449842 571 ntTSL 3 BASIC5.54□□□□□ -1.52
PCDH9Q9HC56 AL672138.1-201ENST00000450604 1015 ntBASIC5.54□□□□□ -1.52
PCDH9Q9HC56 AC016724.1-201ENST00000453215 421 ntBASIC5.54□□□□□ -1.52
PCDH9Q9HC56 AC092754.1-201ENST00000472975 479 ntBASIC5.54□□□□□ -1.52
PCDH9Q9HC56 SEMA6A-AS1-202ENST00000508424 862 ntTSL 3 BASIC5.54□□□□□ -1.52
PCDH9Q9HC56 SETP12-201ENST00000514068 805 ntBASIC5.54□□□□□ -1.52
PCDH9Q9HC56 RBPMS-207ENST00000519647 780 ntTSL 5 BASIC5.54□□□□□ -1.52
PCDH9Q9HC56 AC020937.1-201ENST00000519677 1013 ntBASIC5.54□□□□□ -1.52
PCDH9Q9HC56 AC022360.1-201ENST00000521058 340 ntBASIC5.54□□□□□ -1.52
PCDH9Q9HC56 AC092451.2-201ENST00000538746 658 ntBASIC5.54□□□□□ -1.52
PCDH9Q9HC56 ANKRD49-206ENST00000540349 573 ntTSL 4 BASIC5.54□□□□□ -1.52
PCDH9Q9HC56 AC026401.1-201ENST00000549756 530 ntTSL 3 BASIC5.54□□□□□ -1.52
PCDH9Q9HC56 AL118556.1-201ENST00000555257 502 ntTSL 2 BASIC5.54□□□□□ -1.52
PCDH9Q9HC56 ABHD15-AS1-201ENST00000581474 187 ntTSL 5 BASIC5.54□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 106.1 ms