Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 RMDN2-201ENST00000234195 1985 ntTSL 2 BASIC5.29□□□□□ -1.56
CCDC3Q9BQI4 CDKAL1-201ENST00000274695 3272 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
CCDC3Q9BQI4 SLC38A9-218ENST00000512595 1756 ntTSL 2 BASIC5.29□□□□□ -1.56
CCDC3Q9BQI4 ATF2-201ENST00000264110 4176 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
CCDC3Q9BQI4 EEF1A1P14-201ENST00000421195 1376 ntBASIC5.29□□□□□ -1.56
CCDC3Q9BQI4 AC125336.1-201ENST00000508893 2827 ntBASIC5.29□□□□□ -1.56
CCDC3Q9BQI4 ZNF525-202ENST00000474037 3890 ntAPPRIS P1 TSL 5 BASIC5.28□□□□□ -1.56
CCDC3Q9BQI4 MTCO1P7-201ENST00000419523 1542 ntBASIC5.28□□□□□ -1.56
CCDC3Q9BQI4 FTO-203ENST00000460382 1517 ntTSL 5 BASIC5.28□□□□□ -1.56
CCDC3Q9BQI4 AMY1B-201ENST00000330330 1862 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
CCDC3Q9BQI4 CHD2-202ENST00000420239 2221 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
CCDC3Q9BQI4 LIMA1-215ENST00000552823 3254 ntAPPRIS ALT2 TSL 2 BASIC5.28□□□□□ -1.56
CCDC3Q9BQI4 DNAH8-201ENST00000327475 14360 ntAPPRIS P2 TSL 5 BASIC5.28□□□□□ -1.56
CCDC3Q9BQI4 DCX-202ENST00000358070 9405 ntAPPRIS ALT1 TSL 1 (best) BASIC5.28□□□□□ -1.56
CCDC3Q9BQI4 GTF2IRD2P1-202ENST00000618962 3055 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
CCDC3Q9BQI4 SEC31A-217ENST00000505984 3596 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
CCDC3Q9BQI4 AC131971.1-201ENST00000332881 1482 ntBASIC5.28□□□□□ -1.56
CCDC3Q9BQI4 DNAJC16-210ENST00000616884 5882 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
CCDC3Q9BQI4 SETDB2-201ENST00000258672 2138 ntTSL 5 BASIC5.28□□□□□ -1.56
CCDC3Q9BQI4 RNU6-386P-201ENST00000362650 107 ntBASIC5.28□□□□□ -1.56
CCDC3Q9BQI4 RNU6-697P-201ENST00000363348 107 ntBASIC5.28□□□□□ -1.56
CCDC3Q9BQI4 FABP7-202ENST00000368444 1026 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
CCDC3Q9BQI4 MRRF-207ENST00000373729 870 ntTSL 3 BASIC5.28□□□□□ -1.56
CCDC3Q9BQI4 RNU1-106P-201ENST00000384382 164 ntBASIC5.28□□□□□ -1.56
CCDC3Q9BQI4 MIR550A3-201ENST00000390735 95 ntBASIC5.28□□□□□ -1.56
CCDC3Q9BQI4 MEPE-202ENST00000395102 2123 ntAPPRIS ALT2 TSL 5 BASIC5.28□□□□□ -1.56
CCDC3Q9BQI4 AL589647.1-201ENST00000402485 466 ntBASIC5.28□□□□□ -1.56
CCDC3Q9BQI4 RNU6ATAC21P-201ENST00000408656 126 ntBASIC5.28□□□□□ -1.56
CCDC3Q9BQI4 AC098592.2-201ENST00000413158 265 ntBASIC5.28□□□□□ -1.56
CCDC3Q9BQI4 AC095032.2-201ENST00000414923 418 ntTSL 2 BASIC5.28□□□□□ -1.56
CCDC3Q9BQI4 VN1R31P-201ENST00000417498 730 ntBASIC5.28□□□□□ -1.56
CCDC3Q9BQI4 AC007161.1-204ENST00000423039 460 ntBASIC5.28□□□□□ -1.56
CCDC3Q9BQI4 AL590762.4-201ENST00000425885 253 ntBASIC5.28□□□□□ -1.56
CCDC3Q9BQI4 RPL7P56-201ENST00000429441 717 ntBASIC5.28□□□□□ -1.56
CCDC3Q9BQI4 AC017002.1-201ENST00000432268 881 ntTSL 5 BASIC5.28□□□□□ -1.56
CCDC3Q9BQI4 GSTM5P1-201ENST00000434751 660 ntBASIC5.28□□□□□ -1.56
CCDC3Q9BQI4 AL035706.1-201ENST00000439186 683 ntTSL 3 BASIC5.28□□□□□ -1.56
CCDC3Q9BQI4 AC114878.1-201ENST00000441166 358 ntBASIC5.28□□□□□ -1.56
CCDC3Q9BQI4 AL513343.1-201ENST00000451818 792 ntBASIC5.28□□□□□ -1.56
CCDC3Q9BQI4 AL662889.1-201ENST00000453572 389 ntTSL 3 BASIC5.28□□□□□ -1.56
CCDC3Q9BQI4 AL590652.1-201ENST00000453790 850 ntTSL 3 BASIC5.28□□□□□ -1.56
CCDC3Q9BQI4 AL389915.2-201ENST00000454576 441 ntBASIC5.28□□□□□ -1.56
CCDC3Q9BQI4 SNORD125-201ENST00000459538 96 ntBASIC5.28□□□□□ -1.56
CCDC3Q9BQI4 GIMAP2-202ENST00000474605 309 ntTSL 3 BASIC5.28□□□□□ -1.56
CCDC3Q9BQI4 LINC02499-201ENST00000502291 763 ntTSL 3 BASIC5.28□□□□□ -1.56
CCDC3Q9BQI4 SNRPCP2-201ENST00000504370 475 ntBASIC5.28□□□□□ -1.56
CCDC3Q9BQI4 HMGB1P44-201ENST00000508597 572 ntBASIC5.28□□□□□ -1.56
CCDC3Q9BQI4 AC124854.1-201ENST00000512210 511 ntTSL 3 BASIC5.28□□□□□ -1.56
CCDC3Q9BQI4 RN7SKP253-201ENST00000516424 309 ntBASIC5.28□□□□□ -1.56
CCDC3Q9BQI4 AC104997.1-201ENST00000519761 717 ntBASIC5.28□□□□□ -1.56
CCDC3Q9BQI4 EIF4A2P5-201ENST00000529914 499 ntBASIC5.28□□□□□ -1.56
CCDC3Q9BQI4 AP003168.1-201ENST00000530091 307 ntBASIC5.28□□□□□ -1.56
CCDC3Q9BQI4 PIWIL4-203ENST00000537419 831 ntTSL 2 BASIC5.28□□□□□ -1.56
CCDC3Q9BQI4 LINC01619-209ENST00000552277 571 ntTSL 4 BASIC5.28□□□□□ -1.56
CCDC3Q9BQI4 AC020659.1-204ENST00000562920 400 ntTSL 3 BASIC5.28□□□□□ -1.56
CCDC3Q9BQI4 AC092132.1-201ENST00000570859 352 ntTSL 3 BASIC5.28□□□□□ -1.56
CCDC3Q9BQI4 AC005670.2-201ENST00000571841 889 ntAPPRIS P1 TSL 5 BASIC5.28□□□□□ -1.56
CCDC3Q9BQI4 AC091059.1-201ENST00000585190 215 ntTSL 3 BASIC5.28□□□□□ -1.56
CCDC3Q9BQI4 AC005856.1-201ENST00000585921 286 ntTSL 3 BASIC5.28□□□□□ -1.56
CCDC3Q9BQI4 AC069307.1-201ENST00000602820 447 ntBASIC5.28□□□□□ -1.56
CCDC3Q9BQI4 TAS2R6P-201ENST00000605022 826 ntBASIC5.28□□□□□ -1.56
CCDC3Q9BQI4 AL353770.4-201ENST00000614936 468 ntTSL 5 BASIC5.28□□□□□ -1.56
CCDC3Q9BQI4 AL590491.2-203ENST00000614969 468 ntTSL 4 BASIC5.28□□□□□ -1.56
CCDC3Q9BQI4 AC003001.2-201ENST00000616294 831 ntBASIC5.28□□□□□ -1.56
CCDC3Q9BQI4 LINC00923-207ENST00000619015 505 ntTSL 5 BASIC5.28□□□□□ -1.56
CCDC3Q9BQI4 PLCB1-210ENST00000612075 6576 ntTSL 5 BASIC5.28□□□□□ -1.56
CCDC3Q9BQI4 POSTN-204ENST00000379749 3210 ntTSL 5 BASIC5.28□□□□□ -1.56
CCDC3Q9BQI4 SIAH1-202ENST00000380006 3352 ntAPPRIS P3 BASIC5.28□□□□□ -1.56
CCDC3Q9BQI4 ENSA-214ENST00000513281 1369 ntTSL 2 BASIC5.28□□□□□ -1.56
CCDC3Q9BQI4 FGL1-209ENST00000522444 1367 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
CCDC3Q9BQI4 DYNC1I2-207ENST00000410079 2159 ntTSL 2 BASIC5.28□□□□□ -1.56
CCDC3Q9BQI4 LINC02421-201ENST00000542219 3135 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
CCDC3Q9BQI4 BMPR2-204ENST00000638587 3443 ntTSL 5 BASIC5.27□□□□□ -1.57
CCDC3Q9BQI4 CFAP47-203ENST00000378653 9943 ntAPPRIS P2 TSL 5 BASIC5.27□□□□□ -1.57
CCDC3Q9BQI4 AC112198.2-201ENST00000426589 6996 ntBASIC5.27□□□□□ -1.57
CCDC3Q9BQI4 RNF150-202ENST00000420921 3673 ntTSL 2 BASIC5.27□□□□□ -1.57
CCDC3Q9BQI4 MPDZ-204ENST00000381022 7589 ntAPPRIS ALT2 TSL 5 BASIC5.27□□□□□ -1.57
CCDC3Q9BQI4 AC232271.1-201ENST00000602455 2715 ntBASIC5.27□□□□□ -1.57
CCDC3Q9BQI4 FIRRE-202ENST00000637577 1635 ntTSL 5 BASIC5.27□□□□□ -1.57
CCDC3Q9BQI4 AC004076.2-201ENST00000620532 3323 ntBASIC5.27□□□□□ -1.57
CCDC3Q9BQI4 UGT2B11-201ENST00000446444 2088 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
CCDC3Q9BQI4 PINCR-201ENST00000440955 2228 ntTSL 2 BASIC5.27□□□□□ -1.57
CCDC3Q9BQI4 TNFSF4-202ENST00000367718 3429 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
CCDC3Q9BQI4 FCER1G-201ENST00000289902 591 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
CCDC3Q9BQI4 EFCAB9-201ENST00000398186 702 ntAPPRIS P1 TSL 3 BASIC5.27□□□□□ -1.57
CCDC3Q9BQI4 DUTP5-201ENST00000406790 469 ntBASIC5.27□□□□□ -1.57
CCDC3Q9BQI4 RIMKLBP2-201ENST00000424737 654 ntBASIC5.27□□□□□ -1.57
CCDC3Q9BQI4 AL807757.1-201ENST00000437846 424 ntTSL 3 BASIC5.27□□□□□ -1.57
CCDC3Q9BQI4 AL772161.1-201ENST00000439130 476 ntBASIC5.27□□□□□ -1.57
CCDC3Q9BQI4 AC007327.2-201ENST00000440788 457 ntTSL 3 BASIC5.27□□□□□ -1.57
CCDC3Q9BQI4 RPS11P7-201ENST00000442125 465 ntBASIC5.27□□□□□ -1.57
CCDC3Q9BQI4 SUMO2P1-206ENST00000445436 284 ntBASIC5.27□□□□□ -1.57
CCDC3Q9BQI4 AL161722.1-201ENST00000446972 1032 ntBASIC5.27□□□□□ -1.57
CCDC3Q9BQI4 AP000470.1-201ENST00000448063 693 ntTSL 5 BASIC5.27□□□□□ -1.57
CCDC3Q9BQI4 C1DP3-201ENST00000455013 423 ntBASIC5.27□□□□□ -1.57
CCDC3Q9BQI4 RN7SL188P-201ENST00000469842 285 ntBASIC5.27□□□□□ -1.57
CCDC3Q9BQI4 RN7SL97P-201ENST00000486780 299 ntBASIC5.27□□□□□ -1.57
CCDC3Q9BQI4 AC016651.1-201ENST00000502680 822 ntTSL 3 BASIC5.27□□□□□ -1.57
CCDC3Q9BQI4 GLUD1P3-202ENST00000508551 200 ntBASIC5.27□□□□□ -1.57
CCDC3Q9BQI4 FOXD1-AS1-201ENST00000514661 424 ntTSL 3 BASIC5.27□□□□□ -1.57
Retrieved 100 of 98,524 protein–RNA pairs in 94.8 ms