Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 VN1R48P-201ENST00000448149 1036 ntBASIC4.77□□□□□ -1.65
NKX3-1Q99801 BUD31P2-201ENST00000449374 300 ntBASIC4.77□□□□□ -1.65
NKX3-1Q99801 AL590764.1-201ENST00000450860 726 ntTSL 3 BASIC4.77□□□□□ -1.65
NKX3-1Q99801 AC099344.3-201ENST00000454489 626 ntTSL 3 BASIC4.77□□□□□ -1.65
NKX3-1Q99801 LINC01448-201ENST00000455947 1171 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
NKX3-1Q99801 MTND2P30-201ENST00000456663 382 ntBASIC4.77□□□□□ -1.65
NKX3-1Q99801 AL122020.1-201ENST00000472287 459 ntBASIC4.77□□□□□ -1.65
NKX3-1Q99801 STRADBP1-201ENST00000478954 1281 ntBASIC4.77□□□□□ -1.65
NKX3-1Q99801 AC087071.2-201ENST00000483283 575 ntTSL 4 BASIC4.77□□□□□ -1.65
NKX3-1Q99801 RN7SL570P-201ENST00000484405 292 ntBASIC4.77□□□□□ -1.65
NKX3-1Q99801 RPL7P51-201ENST00000490532 749 ntBASIC4.77□□□□□ -1.65
NKX3-1Q99801 SOX2-OT-216ENST00000497122 578 ntTSL 4 BASIC4.77□□□□□ -1.65
NKX3-1Q99801 PTPN20-212ENST00000502254 599 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
NKX3-1Q99801 LINC00483-204ENST00000502517 940 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
NKX3-1Q99801 PSMA2P2-201ENST00000504319 686 ntBASIC4.77□□□□□ -1.65
NKX3-1Q99801 AC008628.1-201ENST00000508663 265 ntBASIC4.77□□□□□ -1.65
NKX3-1Q99801 AC109481.1-201ENST00000509173 282 ntBASIC4.77□□□□□ -1.65
NKX3-1Q99801 C11orf65-206ENST00000529391 973 ntAPPRIS P1 TSL 2 BASIC4.77□□□□□ -1.65
NKX3-1Q99801 C11orf74-210ENST00000534635 801 ntAPPRIS ALT2 TSL 2 BASIC4.77□□□□□ -1.65
NKX3-1Q99801 HNF1A-AS1-203ENST00000537361 659 ntTSL 3 BASIC4.77□□□□□ -1.65
NKX3-1Q99801 GPRC5D-AS1-205ENST00000540198 404 ntTSL 5 BASIC4.77□□□□□ -1.65
NKX3-1Q99801 AC005906.2-204ENST00000541095 481 ntTSL 3 BASIC4.77□□□□□ -1.65
NKX3-1Q99801 AC126323.3-201ENST00000565136 564 ntTSL 4 BASIC4.77□□□□□ -1.65
NKX3-1Q99801 AC087190.2-201ENST00000565648 731 ntTSL 3 BASIC4.77□□□□□ -1.65
NKX3-1Q99801 MTND4LP25-201ENST00000570218 163 ntBASIC4.77□□□□□ -1.65
NKX3-1Q99801 PPIAL4F-202ENST00000581138 660 ntAPPRIS P1 BASIC4.77□□□□□ -1.65
NKX3-1Q99801 PPIAL4E-201ENST00000581164 785 ntAPPRIS P1 BASIC4.77□□□□□ -1.65
NKX3-1Q99801 RMST_5.1-201ENST00000618704 126 ntBASIC4.77□□□□□ -1.65
NKX3-1Q99801 HNF1A-AS1-205ENST00000619441 343 ntTSL 3 BASIC4.77□□□□□ -1.65
NKX3-1Q99801 UOX-205ENST00000640983 544 ntTSL 4 BASIC4.77□□□□□ -1.65
NKX3-1Q99801 XIRP2-203ENST00000409195 12675 ntTSL 5 BASIC4.77□□□□□ -1.65
NKX3-1Q99801 AL078621.3-201ENST00000623707 2042 ntBASIC4.77□□□□□ -1.65
NKX3-1Q99801 DNAJC28-202ENST00000381947 1354 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
NKX3-1Q99801 AC009501.3-201ENST00000605001 1352 ntBASIC4.77□□□□□ -1.65
NKX3-1Q99801 KIAA0408-204ENST00000483725 3284 ntAPPRIS P2 TSL 5 BASIC4.77□□□□□ -1.65
NKX3-1Q99801 TNRC6B-202ENST00000335727 17933 ntTSL 1 (best) BASIC4.76□□□□□ -1.65
NKX3-1Q99801 AC100757.1-201ENST00000616872 1835 ntBASIC4.76□□□□□ -1.65
NKX3-1Q99801 ST8SIA4-201ENST00000231461 6303 ntAPPRIS P1 TSL 1 (best) BASIC4.76□□□□□ -1.65
NKX3-1Q99801 ARHGEF3-203ENST00000413728 3992 ntTSL 1 (best) BASIC4.76□□□□□ -1.65
NKX3-1Q99801 ZNF83-202ENST00000536937 2726 ntAPPRIS P1 TSL 2 BASIC4.76□□□□□ -1.65
NKX3-1Q99801 EPHA4-202ENST00000409854 3454 ntTSL 1 (best) BASIC4.76□□□□□ -1.65
NKX3-1Q99801 RNF217-201ENST00000359704 1784 ntTSL 1 (best) BASIC4.76□□□□□ -1.65
NKX3-1Q99801 CFAP47-203ENST00000378653 9943 ntAPPRIS P2 TSL 5 BASIC4.76□□□□□ -1.65
NKX3-1Q99801 AFTPH-204ENST00000409933 2811 ntAPPRIS ALT1 TSL 1 (best) BASIC4.76□□□□□ -1.65
NKX3-1Q99801 OR8A1-203ENST00000641670 5709 ntAPPRIS P1 BASIC4.76□□□□□ -1.65
NKX3-1Q99801 VWC2L-202ENST00000427124 4480 ntTSL 1 (best) BASIC4.76□□□□□ -1.65
NKX3-1Q99801 ADGRG4-202ENST00000394141 8971 ntAPPRIS ALT2 TSL 1 (best) BASIC4.76□□□□□ -1.65
NKX3-1Q99801 RLN1-201ENST00000223862 967 ntAPPRIS P1 TSL 1 (best) BASIC4.76□□□□□ -1.65
NKX3-1Q99801 GABRG3-201ENST00000333743 1235 ntTSL 5 BASIC4.76□□□□□ -1.65
NKX3-1Q99801 CLEC4A-203ENST00000352620 615 ntTSL 1 (best) BASIC4.76□□□□□ -1.65
NKX3-1Q99801 FOXP2-202ENST00000360232 1412 ntTSL 1 (best) BASIC4.76□□□□□ -1.65
NKX3-1Q99801 RNU1-150P-201ENST00000362491 162 ntBASIC4.76□□□□□ -1.65
NKX3-1Q99801 AL672167.2-201ENST00000377164 879 ntBASIC4.76□□□□□ -1.65
NKX3-1Q99801 CDC123-202ENST00000378900 933 ntTSL 5 BASIC4.76□□□□□ -1.65
NKX3-1Q99801 IFNA8-201ENST00000380205 1039 ntAPPRIS P1 BASIC4.76□□□□□ -1.65
NKX3-1Q99801 SNORD56.6-201ENST00000384569 71 ntBASIC4.76□□□□□ -1.65
NKX3-1Q99801 TRGV10-201ENST00000390341 512 ntAPPRIS P1 BASIC4.76□□□□□ -1.65
NKX3-1Q99801 AL031985.1-201ENST00000392713 418 ntBASIC4.76□□□□□ -1.65
NKX3-1Q99801 RMRPP5-201ENST00000411156 267 ntBASIC4.76□□□□□ -1.65
NKX3-1Q99801 AC005529.1-201ENST00000411969 289 ntTSL 5 BASIC4.76□□□□□ -1.65
NKX3-1Q99801 BX470102.1-201ENST00000420695 531 ntTSL 2 BASIC4.76□□□□□ -1.65
NKX3-1Q99801 AL035660.1-201ENST00000422041 222 ntBASIC4.76□□□□□ -1.65
NKX3-1Q99801 AC092920.1-201ENST00000428516 678 ntTSL 5 BASIC4.76□□□□□ -1.65
NKX3-1Q99801 C1orf140-201ENST00000434398 645 ntTSL 3 BASIC4.76□□□□□ -1.65
NKX3-1Q99801 AL807757.1-201ENST00000437846 424 ntTSL 3 BASIC4.76□□□□□ -1.65
NKX3-1Q99801 CNTN4-AS2-201ENST00000447256 426 ntTSL 3 BASIC4.76□□□□□ -1.65
NKX3-1Q99801 AL157884.3-201ENST00000448273 1184 ntBASIC4.76□□□□□ -1.65
NKX3-1Q99801 GAS5-218ENST00000448718 565 ntTSL 2 BASIC4.76□□□□□ -1.65
NKX3-1Q99801 AC006482.1-201ENST00000448898 273 ntTSL 3 BASIC4.76□□□□□ -1.65
NKX3-1Q99801 AP006222.1-205ENST00000450734 457 ntBASIC4.76□□□□□ -1.65
NKX3-1Q99801 AC011476.1-201ENST00000466725 307 ntBASIC4.76□□□□□ -1.65
NKX3-1Q99801 AC007998.1-201ENST00000474156 672 ntBASIC4.76□□□□□ -1.65
NKX3-1Q99801 RSRC1-207ENST00000475278 1195 ntTSL 5 BASIC4.76□□□□□ -1.65
NKX3-1Q99801 PLGLA-202ENST00000482249 475 ntTSL 3 BASIC4.76□□□□□ -1.65
NKX3-1Q99801 PRB1-202ENST00000500254 775 ntAPPRIS P3 TSL 1 (best) BASIC4.76□□□□□ -1.65
NKX3-1Q99801 AC021106.1-201ENST00000509020 1058 ntBASIC4.76□□□□□ -1.65
NKX3-1Q99801 AC108157.1-201ENST00000510511 539 ntBASIC4.76□□□□□ -1.65
NKX3-1Q99801 AC074255.1-201ENST00000511259 501 ntBASIC4.76□□□□□ -1.65
NKX3-1Q99801 AC021193.1-201ENST00000511607 420 ntBASIC4.76□□□□□ -1.65
NKX3-1Q99801 AC112206.4-201ENST00000515142 405 ntBASIC4.76□□□□□ -1.65
NKX3-1Q99801 HMGN1P9-201ENST00000515212 298 ntBASIC4.76□□□□□ -1.65
NKX3-1Q99801 NSMCE2-206ENST00000519010 848 ntTSL 2 BASIC4.76□□□□□ -1.65
NKX3-1Q99801 AC022826.1-201ENST00000519383 805 ntBASIC4.76□□□□□ -1.65
NKX3-1Q99801 AC025524.2-211ENST00000519990 1173 ntTSL 1 (best) BASIC4.76□□□□□ -1.65
NKX3-1Q99801 NSMCE2-210ENST00000522563 1037 ntAPPRIS P1 TSL 5 BASIC4.76□□□□□ -1.65
NKX3-1Q99801 AC062004.1-202ENST00000524014 246 ntTSL 5 BASIC4.76□□□□□ -1.65
NKX3-1Q99801 DDHD2-219ENST00000529845 945 ntTSL 5 BASIC4.76□□□□□ -1.65
NKX3-1Q99801 AP001804.2-201ENST00000533932 910 ntBASIC4.76□□□□□ -1.65
NKX3-1Q99801 SULT6B1-205ENST00000535679 1027 ntAPPRIS P1 TSL 1 (best) BASIC4.76□□□□□ -1.65
NKX3-1Q99801 AC007527.1-202ENST00000543347 382 ntTSL 3 BASIC4.76□□□□□ -1.65
NKX3-1Q99801 AC025419.1-207ENST00000546198 1072 ntTSL 3 BASIC4.76□□□□□ -1.65
NKX3-1Q99801 MGAT4C-206ENST00000552435 550 ntTSL 4 BASIC4.76□□□□□ -1.65
NKX3-1Q99801 SLC7A7-210ENST00000554517 1158 ntTSL 5 BASIC4.76□□□□□ -1.65
NKX3-1Q99801 AL118556.1-201ENST00000555257 502 ntTSL 2 BASIC4.76□□□□□ -1.65
NKX3-1Q99801 AC009097.1-201ENST00000567077 406 ntTSL 3 BASIC4.76□□□□□ -1.65
NKX3-1Q99801 AC074050.3-201ENST00000569175 441 ntTSL 4 BASIC4.76□□□□□ -1.65
NKX3-1Q99801 AC010531.4-202ENST00000569872 1718 ntTSL 2 BASIC4.76□□□□□ -1.65
NKX3-1Q99801 RN7SL290P-201ENST00000578661 300 ntBASIC4.76□□□□□ -1.65
NKX3-1Q99801 MRO-208ENST00000588444 866 ntTSL 3 BASIC4.76□□□□□ -1.65
NKX3-1Q99801 AC063977.5-201ENST00000601044 974 ntBASIC4.76□□□□□ -1.65
Retrieved 100 of 98,524 protein–RNA pairs in 126.9 ms