Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 AC024941.1-201ENST00000612250 334 ntBASIC6.13□□□□□ -1.43
BRCA1P38398 PDCD6IPP1-202ENST00000622242 1064 ntBASIC6.13□□□□□ -1.43
BRCA1P38398 ARHGEF3-203ENST00000413728 3992 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
BRCA1P38398 PMCHL2-201ENST00000415808 1841 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
BRCA1P38398 PATE4-201ENST00000457514 1983 ntAPPRIS P2 TSL 2 BASIC6.13□□□□□ -1.43
BRCA1P38398 AP000547.3-204ENST00000588548 2523 ntBASIC6.13□□□□□ -1.43
BRCA1P38398 CSDE1-205ENST00000438362 4167 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
BRCA1P38398 AC015799.1-201ENST00000622996 3122 ntBASIC6.13□□□□□ -1.43
BRCA1P38398 LINC00891-201ENST00000627173 4113 ntTSL 2 BASIC6.13□□□□□ -1.43
BRCA1P38398 BIRC6-201ENST00000421745 15703 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
BRCA1P38398 TRIP12-201ENST00000283943 9874 ntAPPRIS P3 TSL 1 (best) BASIC6.13□□□□□ -1.43
BRCA1P38398 KIF1B-204ENST00000377086 10669 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
BRCA1P38398 HIST1H1A-201ENST00000244573 648 ntAPPRIS P1 BASIC6.13□□□□□ -1.43
BRCA1P38398 NUP37-201ENST00000251074 1203 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
BRCA1P38398 RAD23BP1-201ENST00000421404 1227 ntBASIC6.13□□□□□ -1.43
BRCA1P38398 AC092651.1-201ENST00000426110 312 ntBASIC6.13□□□□□ -1.43
BRCA1P38398 TRAT1-202ENST00000426646 1596 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
BRCA1P38398 AL732292.1-201ENST00000426692 226 ntBASIC6.13□□□□□ -1.43
BRCA1P38398 AC016831.4-201ENST00000438302 307 ntBASIC6.13□□□□□ -1.43
BRCA1P38398 AC104971.1-201ENST00000495117 578 ntBASIC6.13□□□□□ -1.43
BRCA1P38398 AC087667.1-201ENST00000500180 1422 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
BRCA1P38398 AC010230.1-201ENST00000514115 443 ntTSL 3 BASIC6.13□□□□□ -1.43
BRCA1P38398 AC130364.2-201ENST00000528639 604 ntBASIC6.13□□□□□ -1.43
BRCA1P38398 FGD4-213ENST00000546442 3503 ntTSL 5 BASIC6.13□□□□□ -1.43
BRCA1P38398 AC091073.1-201ENST00000559620 666 ntTSL 3 BASIC6.13□□□□□ -1.43
BRCA1P38398 IGKV1OR2-9-201ENST00000603957 287 ntBASIC6.13□□□□□ -1.43
BRCA1P38398 IGKV1OR2-11-201ENST00000604120 287 ntBASIC6.13□□□□□ -1.43
BRCA1P38398 AC115286.1-201ENST00000604298 434 ntBASIC6.13□□□□□ -1.43
BRCA1P38398 AC114781.5-201ENST00000615297 108 ntBASIC6.13□□□□□ -1.43
BRCA1P38398 SORBS1-205ENST00000371227 7279 ntAPPRIS ALT2 TSL 1 (best) BASIC6.13□□□□□ -1.43
BRCA1P38398 PMCHL2-202ENST00000450213 1917 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
BRCA1P38398 ACSL5-202ENST00000354655 3351 ntAPPRIS P1 TSL 2 BASIC6.12□□□□□ -1.43
BRCA1P38398 AC099654.2-201ENST00000433031 1980 ntBASIC6.12□□□□□ -1.43
BRCA1P38398 AC073342.2-201ENST00000595842 1800 ntBASIC6.12□□□□□ -1.43
BRCA1P38398 ENPP3-203ENST00000414305 3418 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
BRCA1P38398 PCDH11Y-204ENST00000400457 9039 ntAPPRIS P5 TSL 1 (best) BASIC6.12□□□□□ -1.43
BRCA1P38398 SIPA1L1-202ENST00000381232 5944 ntAPPRIS ALT1 TSL 1 (best) BASIC6.12□□□□□ -1.43
BRCA1P38398 ZNF442-205ENST00000545749 1884 ntAPPRIS P1 TSL 5 BASIC6.12□□□□□ -1.43
BRCA1P38398 METTL8-217ENST00000612742 8132 ntAPPRIS P1 TSL 2 BASIC6.12□□□□□ -1.43
BRCA1P38398 ZC3H12C-202ENST00000453089 9542 ntTSL 2 BASIC6.12□□□□□ -1.43
BRCA1P38398 LTA4H-202ENST00000413268 1908 ntTSL 2 BASIC6.12□□□□□ -1.43
BRCA1P38398 AC107953.2-201ENST00000518362 1408 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
BRCA1P38398 MFSD8-220ENST00000641243 1422 ntBASIC6.12□□□□□ -1.43
BRCA1P38398 ZNF462-201ENST00000277225 10414 ntAPPRIS P2 TSL 1 (best) BASIC6.12□□□□□ -1.43
BRCA1P38398 TRPM6-204ENST00000449912 8244 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
BRCA1P38398 TPD52-203ENST00000448733 4339 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
BRCA1P38398 DNASE2B-202ENST00000370665 1269 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
BRCA1P38398 SNX10-204ENST00000409838 944 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
BRCA1P38398 AL023693.1-201ENST00000434255 216 ntTSL 5 BASIC6.12□□□□□ -1.43
BRCA1P38398 AL390879.1-201ENST00000439143 386 ntBASIC6.12□□□□□ -1.43
BRCA1P38398 MAL2-201ENST00000522112 573 ntTSL 4 BASIC6.12□□□□□ -1.43
BRCA1P38398 AC138035.1-202ENST00000604669 683 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
BRCA1P38398 PIGN-217ENST00000591238 1622 ntTSL 5 BASIC6.12□□□□□ -1.43
BRCA1P38398 GDA-209ENST00000545168 5362 ntTSL 2 BASIC6.12□□□□□ -1.43
BRCA1P38398 C9orf72-203ENST00000380003 3200 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
BRCA1P38398 MELK-210ENST00000543751 2400 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
BRCA1P38398 AL390036.1-202ENST00000634635 2439 ntTSL 5 BASIC6.11□□□□□ -1.43
BRCA1P38398 THAP6-202ENST00000380837 3423 ntAPPRIS ALT2 TSL 1 (best) BASIC6.11□□□□□ -1.43
BRCA1P38398 IQGAP2-204ENST00000502745 3404 ntTSL 2 BASIC6.11□□□□□ -1.43
BRCA1P38398 SPRR2G-201ENST00000368748 568 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
BRCA1P38398 AL050305.1-201ENST00000399993 1230 ntBASIC6.11□□□□□ -1.43
BRCA1P38398 RN7SL441P-201ENST00000492388 296 ntBASIC6.11□□□□□ -1.43
BRCA1P38398 TM4SF1-AS1-202ENST00000496491 754 ntTSL 2 BASIC6.11□□□□□ -1.43
BRCA1P38398 LINC02217-201ENST00000505844 687 ntTSL 2 BASIC6.11□□□□□ -1.43
BRCA1P38398 AC020593.1-201ENST00000507399 299 ntBASIC6.11□□□□□ -1.43
BRCA1P38398 INTS2-202ENST00000444766 5878 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
BRCA1P38398 PAIP2B-201ENST00000244221 6279 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
BRCA1P38398 KCNJ2-201ENST00000243457 5392 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
BRCA1P38398 AL158066.1-201ENST00000451298 3796 ntTSL 2 BASIC6.11□□□□□ -1.43
BRCA1P38398 ZNF143-201ENST00000299606 2562 ntTSL 5 BASIC6.11□□□□□ -1.43
BRCA1P38398 C6orf10-207ENST00000533191 2170 ntAPPRIS ALT2 TSL 1 (best) BASIC6.11□□□□□ -1.43
BRCA1P38398 AC097063.1-201ENST00000426714 1797 ntBASIC6.11□□□□□ -1.43
BRCA1P38398 CLCA3P-201ENST00000284054 2407 ntTSL 5 BASIC6.11□□□□□ -1.43
BRCA1P38398 ATP5A1P4-201ENST00000556888 1605 ntBASIC6.11□□□□□ -1.43
BRCA1P38398 SMC1A-202ENST00000375340 9930 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
BRCA1P38398 USP50-205ENST00000616326 1419 ntAPPRIS ALT2 TSL 5 BASIC6.11□□□□□ -1.43
BRCA1P38398 ADGRL3-206ENST00000507164 4982 ntTSL 5 BASIC6.11□□□□□ -1.43
BRCA1P38398 STK3-216ENST00000523601 3107 ntTSL 2 BASIC6.11□□□□□ -1.43
BRCA1P38398 RPL26-201ENST00000293842 524 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
BRCA1P38398 RNU1-85P-201ENST00000364127 164 ntBASIC6.11□□□□□ -1.43
BRCA1P38398 ATG4AP1-201ENST00000416893 538 ntBASIC6.11□□□□□ -1.43
BRCA1P38398 EEF1A1P1-201ENST00000447052 739 ntBASIC6.11□□□□□ -1.43
BRCA1P38398 AC017101.1-201ENST00000453665 571 ntTSL 4 BASIC6.11□□□□□ -1.43
BRCA1P38398 RPS24P16-201ENST00000497294 392 ntBASIC6.11□□□□□ -1.43
BRCA1P38398 AC022784.4-201ENST00000518589 422 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
BRCA1P38398 AP005436.1-201ENST00000531454 488 ntTSL 2 BASIC6.11□□□□□ -1.43
BRCA1P38398 TMEM106C-220ENST00000552561 810 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
BRCA1P38398 AC023575.1-201ENST00000580510 358 ntBASIC6.11□□□□□ -1.43
BRCA1P38398 PRELID3BP3-201ENST00000584963 545 ntBASIC6.11□□□□□ -1.43
BRCA1P38398 MIR3138-201ENST00000585238 82 ntBASIC6.11□□□□□ -1.43
BRCA1P38398 AC011626.1-201ENST00000604710 562 ntBASIC6.11□□□□□ -1.43
BRCA1P38398 CTSLP2-203ENST00000628708 493 ntTSL 5 BASIC6.11□□□□□ -1.43
BRCA1P38398 TRIM38-201ENST00000357085 9413 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
BRCA1P38398 DCX-203ENST00000371993 9231 ntAPPRIS ALT1 TSL 5 BASIC6.11□□□□□ -1.43
BRCA1P38398 AKAP7-209ENST00000541650 2008 ntTSL 5 BASIC6.11□□□□□ -1.43
BRCA1P38398 EXOC1-202ENST00000349598 3248 ntAPPRIS ALT1 TSL 2 BASIC6.11□□□□□ -1.43
BRCA1P38398 EDIL3-202ENST00000380138 4244 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
BRCA1P38398 AMPD1-203ENST00000520113 2375 ntAPPRIS P3 TSL 1 (best) BASIC6.1□□□□□ -1.43
BRCA1P38398 DCN-218ENST00000551354 2924 ntTSL 3 BASIC6.1□□□□□ -1.43
BRCA1P38398 FBXO3-213ENST00000534136 3217 ntTSL 5 BASIC6.1□□□□□ -1.43
Retrieved 100 of 98,524 protein–RNA pairs in 84 ms