Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 AL157385.1-201ENST00000446973 268 ntBASIC4.93□□□□□ -1.62
SDC1P18827 SEPT7P6-201ENST00000469999 1143 ntBASIC4.93□□□□□ -1.62
SDC1P18827 AC094108.1-201ENST00000502494 527 ntTSL 3 BASIC4.93□□□□□ -1.62
SDC1P18827 LINC02492-201ENST00000502952 564 ntTSL 5 BASIC4.93□□□□□ -1.62
SDC1P18827 GNPDA2-202ENST00000507534 1050 ntTSL 2 BASIC4.93□□□□□ -1.62
SDC1P18827 AC147055.1-201ENST00000509261 750 ntBASIC4.93□□□□□ -1.62
SDC1P18827 AC106732.1-201ENST00000512458 550 ntTSL 4 BASIC4.93□□□□□ -1.62
SDC1P18827 AC022784.5-201ENST00000522241 437 ntBASIC4.93□□□□□ -1.62
SDC1P18827 AC002563.1-201ENST00000535109 451 ntTSL 3 BASIC4.93□□□□□ -1.62
SDC1P18827 MRE11-209ENST00000540013 1212 ntTSL 1 (best) BASIC4.93□□□□□ -1.62
SDC1P18827 LINC01572-205ENST00000570152 360 ntTSL 3 BASIC4.93□□□□□ -1.62
SDC1P18827 AC130650.1-201ENST00000570581 415 ntTSL 2 BASIC4.93□□□□□ -1.62
SDC1P18827 BCAR4-204ENST00000573319 1273 ntTSL 5 BASIC4.93□□□□□ -1.62
SDC1P18827 AC020978.7-201ENST00000575953 1187 ntBASIC4.93□□□□□ -1.62
SDC1P18827 MIR3614-201ENST00000581261 86 ntBASIC4.93□□□□□ -1.62
SDC1P18827 AC093484.5-201ENST00000585048 304 ntTSL 3 BASIC4.93□□□□□ -1.62
SDC1P18827 KIAA1328-202ENST00000586135 1863 ntTSL 1 (best) BASIC4.93□□□□□ -1.62
SDC1P18827 AC009303.3-201ENST00000591103 736 ntBASIC4.93□□□□□ -1.62
SDC1P18827 AC004160.1-210ENST00000599875 689 ntTSL 5 BASIC4.93□□□□□ -1.62
SDC1P18827 USP32P2-207ENST00000608376 253 ntTSL 5 BASIC4.93□□□□□ -1.62
SDC1P18827 WBP1LP8-201ENST00000617401 327 ntBASIC4.93□□□□□ -1.62
SDC1P18827 AC103703.1-201ENST00000634783 663 ntBASIC4.93□□□□□ -1.62
SDC1P18827 PEX2-201ENST00000357039 4317 ntAPPRIS P1 TSL 1 (best) BASIC4.93□□□□□ -1.62
SDC1P18827 SLC26A3-201ENST00000340010 2863 ntAPPRIS P1 TSL 1 (best) BASIC4.93□□□□□ -1.62
SDC1P18827 MMRN1-202ENST00000394980 5217 ntAPPRIS P1 TSL 5 BASIC4.93□□□□□ -1.62
SDC1P18827 ZFP14-201ENST00000270001 7489 ntAPPRIS P1 TSL 1 (best) BASIC4.93□□□□□ -1.62
SDC1P18827 PPIG-201ENST00000260970 6368 ntAPPRIS P1 TSL 1 (best) BASIC4.93□□□□□ -1.62
SDC1P18827 ALMS1-IT1-201ENST00000441587 2107 ntTSL 1 (best) BASIC4.93□□□□□ -1.62
SDC1P18827 KMO-202ENST00000366557 4888 ntAPPRIS ALT2 TSL 5 BASIC4.92□□□□□ -1.62
SDC1P18827 CLEC12A-205ENST00000434319 1515 ntTSL 1 (best) BASIC4.92□□□□□ -1.62
SDC1P18827 GUCY1A3-201ENST00000296518 4400 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
SDC1P18827 OR2AT4-203ENST00000641541 8795 ntAPPRIS P1 BASIC4.92□□□□□ -1.62
SDC1P18827 ERI2-202ENST00000357967 3499 ntAPPRIS P1 TSL 5 BASIC4.92□□□□□ -1.62
SDC1P18827 FYB1-201ENST00000351578 4750 ntAPPRIS P3 TSL 1 (best) BASIC4.92□□□□□ -1.62
SDC1P18827 PNLIPRP3-201ENST00000369230 2354 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
SDC1P18827 RNF182-207ENST00000537663 3382 ntAPPRIS P1 TSL 4 BASIC4.92□□□□□ -1.62
SDC1P18827 INPP4B-201ENST00000262992 3741 ntAPPRIS P1 TSL 5 BASIC4.92□□□□□ -1.62
SDC1P18827 LINC01902-203ENST00000637369 7356 ntTSL 5 BASIC4.92□□□□□ -1.62
SDC1P18827 TEX41-210ENST00000451774 2098 ntTSL 1 (best) BASIC4.92□□□□□ -1.62
SDC1P18827 WEE2-201ENST00000397541 3061 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
SDC1P18827 ZC3H12B-201ENST00000338957 7256 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
SDC1P18827 OR8A1-201ENST00000284287 1146 ntAPPRIS P1 BASIC4.92□□□□□ -1.62
SDC1P18827 OR4K13-201ENST00000315693 915 ntAPPRIS P1 BASIC4.92□□□□□ -1.62
SDC1P18827 IFNA8-201ENST00000380205 1039 ntAPPRIS P1 BASIC4.92□□□□□ -1.62
SDC1P18827 F9-202ENST00000394090 1272 ntTSL 1 (best) BASIC4.92□□□□□ -1.62
SDC1P18827 AC211486.3-201ENST00000412694 621 ntBASIC4.92□□□□□ -1.62
SDC1P18827 AC007738.1-201ENST00000413892 348 ntBASIC4.92□□□□□ -1.62
SDC1P18827 AL592402.1-201ENST00000417161 440 ntTSL 4 BASIC4.92□□□□□ -1.62
SDC1P18827 AL390036.1-201ENST00000419428 734 ntTSL 5 BASIC4.92□□□□□ -1.62
SDC1P18827 AC012668.2-201ENST00000431727 503 ntTSL 3 BASIC4.92□□□□□ -1.62
SDC1P18827 AC003991.1-205ENST00000447758 625 ntTSL 5 BASIC4.92□□□□□ -1.62
SDC1P18827 BBIP1-208ENST00000454061 812 ntTSL 1 (best) BASIC4.92□□□□□ -1.62
SDC1P18827 AC092590.1-201ENST00000471672 737 ntTSL 3 BASIC4.92□□□□□ -1.62
SDC1P18827 AC020779.1-201ENST00000478757 796 ntBASIC4.92□□□□□ -1.62
SDC1P18827 CREM-238ENST00000488741 651 ntTSL 2 BASIC4.92□□□□□ -1.62
SDC1P18827 AC012400.1-201ENST00000518452 381 ntBASIC4.92□□□□□ -1.62
SDC1P18827 AC113386.1-201ENST00000523584 381 ntTSL 5 BASIC4.92□□□□□ -1.62
SDC1P18827 LINC01947-201ENST00000523742 566 ntTSL 4 BASIC4.92□□□□□ -1.62
SDC1P18827 AC132219.1-201ENST00000524337 478 ntTSL 5 BASIC4.92□□□□□ -1.62
SDC1P18827 LINC02408-202ENST00000538573 559 ntTSL 4 BASIC4.92□□□□□ -1.62
SDC1P18827 LINC02552-203ENST00000545630 583 ntTSL 2 BASIC4.92□□□□□ -1.62
SDC1P18827 NQO1-206ENST00000564043 892 ntTSL 1 (best) BASIC4.92□□□□□ -1.62
SDC1P18827 AL157938.2-202ENST00000588378 875 ntTSL 5 BASIC4.92□□□□□ -1.62
SDC1P18827 AC015982.1-201ENST00000608113 465 ntBASIC4.92□□□□□ -1.62
SDC1P18827 AP005432.2-201ENST00000608162 586 ntBASIC4.92□□□□□ -1.62
SDC1P18827 AL359513.1-201ENST00000614364 557 ntBASIC4.92□□□□□ -1.62
SDC1P18827 AC007204.2-201ENST00000615022 616 ntBASIC4.92□□□□□ -1.62
SDC1P18827 AC005840.5-201ENST00000619166 599 ntBASIC4.92□□□□□ -1.62
SDC1P18827 BX005214.3-202ENST00000619809 325 ntBASIC4.92□□□□□ -1.62
SDC1P18827 AP000648.2-201ENST00000624182 404 ntBASIC4.92□□□□□ -1.62
SDC1P18827 PCBP1-AS1-278ENST00000625518 864 ntTSL 5 BASIC4.92□□□□□ -1.62
SDC1P18827 SAMMSON-209ENST00000641222 1100 ntBASIC4.92□□□□□ -1.62
SDC1P18827 AHNAK-202ENST00000378024 18787 ntAPPRIS P3 TSL 2 BASIC4.92□□□□□ -1.62
SDC1P18827 CLCN5-202ENST00000376088 10108 ntTSL 2 BASIC4.92□□□□□ -1.62
SDC1P18827 SMC2-202ENST00000374787 4266 ntAPPRIS P1 TSL 2 BASIC4.92□□□□□ -1.62
SDC1P18827 OAZ3-204ENST00000479764 3789 ntTSL 5 BASIC4.92□□□□□ -1.62
SDC1P18827 EDA2R-203ENST00000396050 3429 ntAPPRIS ALT2 TSL 5 BASIC4.92□□□□□ -1.62
SDC1P18827 WDPCP-202ENST00000398544 2063 ntAPPRIS ALT2 TSL 1 (best) BASIC4.92□□□□□ -1.62
SDC1P18827 PRUNE2-204ENST00000376718 12584 ntAPPRIS P3 TSL 5 BASIC4.92□□□□□ -1.62
SDC1P18827 ZNF83-204ENST00000545872 2633 ntAPPRIS P1 TSL 2 BASIC4.92□□□□□ -1.62
SDC1P18827 SMG1P3-204ENST00000520823 3194 ntTSL 5 BASIC4.92□□□□□ -1.62
SDC1P18827 RNMT-202ENST00000383314 6250 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
SDC1P18827 EEF1A1P14-201ENST00000421195 1376 ntBASIC4.91□□□□□ -1.62
SDC1P18827 RAD51AP1-202ENST00000352618 2113 ntAPPRIS P3 TSL 1 (best) BASIC4.91□□□□□ -1.62
SDC1P18827 RIF1-203ENST00000428287 7722 ntAPPRIS ALT2 TSL 1 (best) BASIC4.91□□□□□ -1.62
SDC1P18827 AC005005.4-201ENST00000623789 16698 ntBASIC4.91□□□□□ -1.62
SDC1P18827 AL445623.2-201ENST00000640307 4805 ntTSL 1 (best) BASIC4.91□□□□□ -1.62
SDC1P18827 FILIP1-202ENST00000370020 4051 ntTSL 1 (best) BASIC4.91□□□□□ -1.62
SDC1P18827 AC005154.1-228ENST00000454922 1405 ntTSL 1 (best) BASIC4.91□□□□□ -1.62
SDC1P18827 GABRG2-203ENST00000414552 3927 ntTSL 1 (best) BASIC4.91□□□□□ -1.62
SDC1P18827 HEATR5A-203ENST00000543095 7840 ntAPPRIS P1 TSL 5 BASIC4.91□□□□□ -1.62
SDC1P18827 STAU2-220ENST00000522695 2646 ntAPPRIS ALT1 TSL 1 (best) BASIC4.91□□□□□ -1.62
SDC1P18827 PLSCR2-201ENST00000336685 1272 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
SDC1P18827 NPM1-202ENST00000351986 1237 ntTSL 1 (best) BASIC4.91□□□□□ -1.62
SDC1P18827 PRKACB-203ENST00000370684 869 ntTSL 5 BASIC4.91□□□□□ -1.62
SDC1P18827 OR2W1-201ENST00000377175 1028 ntAPPRIS P1 BASIC4.91□□□□□ -1.62
SDC1P18827 SLC19A3-202ENST00000409287 644 ntTSL 3 BASIC4.91□□□□□ -1.62
SDC1P18827 RPL12P43-201ENST00000420608 499 ntBASIC4.91□□□□□ -1.62
SDC1P18827 AL360007.1-201ENST00000426166 349 ntTSL 3 BASIC4.91□□□□□ -1.62
SDC1P18827 LINC01889-201ENST00000430692 668 ntTSL 5 BASIC4.91□□□□□ -1.62
Retrieved 100 of 98,524 protein–RNA pairs in 98.3 ms