Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 CD96-202ENST00000352690 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC7.84□□□□□ -1.15
LIMD1Q9UGP4 CDH18-201ENST00000274170 2809 ntAPPRIS P1 TSL 1 (best) BASIC7.84□□□□□ -1.15
LIMD1Q9UGP4 MAPK10-296ENST00000641283 2826 ntAPPRIS P2 BASIC7.84□□□□□ -1.15
LIMD1Q9UGP4 SORBS1-212ENST00000371249 5927 ntAPPRIS P3 TSL 1 (best) BASIC7.84□□□□□ -1.15
LIMD1Q9UGP4 LIMA1-216ENST00000552909 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC7.84□□□□□ -1.15
LIMD1Q9UGP4 OR5M2P-202ENST00000641241 4242 ntBASIC7.84□□□□□ -1.15
LIMD1Q9UGP4 PPHLN1-207ENST00000432191 3377 ntTSL 1 (best) BASIC7.84□□□□□ -1.15
LIMD1Q9UGP4 AC016831.3-201ENST00000446451 1723 ntBASIC7.84□□□□□ -1.15
LIMD1Q9UGP4 FHL1-217ENST00000539015 2310 ntTSL 2 BASIC7.84□□□□□ -1.15
LIMD1Q9UGP4 EIF4E2-207ENST00000409514 3525 ntTSL 5 BASIC7.84□□□□□ -1.15
LIMD1Q9UGP4 LINC00683-202ENST00000579781 3510 ntTSL 2 BASIC7.84□□□□□ -1.15
LIMD1Q9UGP4 LRBA-204ENST00000507224 8826 ntTSL 5 BASIC7.84□□□□□ -1.15
LIMD1Q9UGP4 AC107021.2-201ENST00000567714 2095 ntBASIC7.84□□□□□ -1.15
LIMD1Q9UGP4 PPARA-201ENST00000262735 9965 ntAPPRIS P1 TSL 5 BASIC7.84□□□□□ -1.15
LIMD1Q9UGP4 AL450423.1-201ENST00000615176 1857 ntTSL 2 BASIC7.84□□□□□ -1.15
LIMD1Q9UGP4 ORM1-201ENST00000259396 802 ntAPPRIS P1 TSL 1 (best) BASIC7.84□□□□□ -1.15
LIMD1Q9UGP4 LRRC69-201ENST00000343709 720 ntTSL 2 BASIC7.84□□□□□ -1.15
LIMD1Q9UGP4 RNU4-81P-201ENST00000363561 144 ntBASIC7.84□□□□□ -1.15
LIMD1Q9UGP4 OR2H1-204ENST00000396792 1294 ntAPPRIS P1 BASIC7.84□□□□□ -1.15
LIMD1Q9UGP4 SNORA2C-201ENST00000408564 137 ntBASIC7.84□□□□□ -1.15
LIMD1Q9UGP4 RNU6-908P-201ENST00000410160 94 ntBASIC7.84□□□□□ -1.15
LIMD1Q9UGP4 BCRP8-201ENST00000412037 255 ntBASIC7.84□□□□□ -1.15
LIMD1Q9UGP4 FTOP1-201ENST00000419363 861 ntBASIC7.84□□□□□ -1.15
LIMD1Q9UGP4 AL590385.1-201ENST00000419446 462 ntTSL 3 BASIC7.84□□□□□ -1.15
LIMD1Q9UGP4 AL031584.2-201ENST00000420585 767 ntTSL 3 BASIC7.84□□□□□ -1.15
LIMD1Q9UGP4 HCG25-217ENST00000422366 702 ntTSL 3 BASIC7.84□□□□□ -1.15
LIMD1Q9UGP4 EIF1P3-201ENST00000423841 334 ntBASIC7.84□□□□□ -1.15
LIMD1Q9UGP4 MIR181A2HG-201ENST00000429139 662 ntTSL 2 BASIC7.84□□□□□ -1.15
LIMD1Q9UGP4 AL645634.2-201ENST00000431956 411 ntTSL 3 BASIC7.84□□□□□ -1.15
LIMD1Q9UGP4 RPL23AP16-201ENST00000441715 421 ntBASIC7.84□□□□□ -1.15
LIMD1Q9UGP4 AL451074.4-201ENST00000447545 470 ntBASIC7.84□□□□□ -1.15
LIMD1Q9UGP4 AL353148.1-201ENST00000449761 463 ntTSL 2 BASIC7.84□□□□□ -1.15
LIMD1Q9UGP4 KF459542.1-201ENST00000450908 553 ntBASIC7.84□□□□□ -1.15
LIMD1Q9UGP4 IQCG-204ENST00000453254 1230 ntTSL 2 BASIC7.84□□□□□ -1.15
LIMD1Q9UGP4 YAP1P2-201ENST00000455104 610 ntBASIC7.84□□□□□ -1.15
LIMD1Q9UGP4 RN7SL149P-201ENST00000465197 281 ntBASIC7.84□□□□□ -1.15
LIMD1Q9UGP4 AC099328.2-201ENST00000465347 455 ntTSL 3 BASIC7.84□□□□□ -1.15
LIMD1Q9UGP4 AC117395.3-201ENST00000471176 680 ntTSL 4 BASIC7.84□□□□□ -1.15
LIMD1Q9UGP4 RPL7P42-201ENST00000481005 679 ntBASIC7.84□□□□□ -1.15
LIMD1Q9UGP4 L3HYPDH-206ENST00000487285 700 ntTSL 3 BASIC7.84□□□□□ -1.15
LIMD1Q9UGP4 RPS26P24-201ENST00000497656 331 ntBASIC7.84□□□□□ -1.15
LIMD1Q9UGP4 CSN1S1-202ENST00000505782 871 ntAPPRIS ALT2 TSL 5 BASIC7.84□□□□□ -1.15
LIMD1Q9UGP4 CSN1S1-204ENST00000507772 895 ntAPPRIS ALT2 TSL 5 BASIC7.84□□□□□ -1.15
LIMD1Q9UGP4 AC005920.2-201ENST00000509833 332 ntTSL 3 BASIC7.84□□□□□ -1.15
LIMD1Q9UGP4 AC113346.1-201ENST00000510150 287 ntTSL 3 BASIC7.84□□□□□ -1.15
LIMD1Q9UGP4 AC006499.2-201ENST00000513470 337 ntBASIC7.84□□□□□ -1.15
LIMD1Q9UGP4 AC106800.2-201ENST00000514009 1103 ntBASIC7.84□□□□□ -1.15
LIMD1Q9UGP4 SNX18P27-201ENST00000523611 779 ntBASIC7.84□□□□□ -1.15
LIMD1Q9UGP4 MS4A13-204ENST00000527948 790 ntTSL 1 (best) BASIC7.84□□□□□ -1.15
LIMD1Q9UGP4 AC021393.1-201ENST00000531077 433 ntTSL 3 BASIC7.84□□□□□ -1.15
LIMD1Q9UGP4 AP004833.3-201ENST00000531893 322 ntBASIC7.84□□□□□ -1.15
LIMD1Q9UGP4 AP001107.4-201ENST00000533576 539 ntTSL 3 BASIC7.84□□□□□ -1.15
LIMD1Q9UGP4 HOMER1-205ENST00000535690 642 ntTSL 1 (best) BASIC7.84□□□□□ -1.15
LIMD1Q9UGP4 AP003781.1-201ENST00000543403 404 ntTSL 3 BASIC7.84□□□□□ -1.15
LIMD1Q9UGP4 AC089984.3-201ENST00000552838 363 ntBASIC7.84□□□□□ -1.15
LIMD1Q9UGP4 AC092142.1-202ENST00000567021 829 ntTSL 5 BASIC7.84□□□□□ -1.15
LIMD1Q9UGP4 KCNMA1-AS1-204ENST00000595702 504 ntTSL 5 BASIC7.84□□□□□ -1.15
LIMD1Q9UGP4 CKS1BP3-201ENST00000600888 237 ntBASIC7.84□□□□□ -1.15
LIMD1Q9UGP4 AC040170.1-201ENST00000602425 564 ntTSL 2 BASIC7.84□□□□□ -1.15
LIMD1Q9UGP4 COX6CP16-201ENST00000603667 216 ntBASIC7.84□□□□□ -1.15
LIMD1Q9UGP4 AL157899.1-201ENST00000604110 936 ntBASIC7.84□□□□□ -1.15
LIMD1Q9UGP4 CUX2P1-201ENST00000606426 298 ntBASIC7.84□□□□□ -1.15
LIMD1Q9UGP4 AL451049.1-201ENST00000608672 497 ntBASIC7.84□□□□□ -1.15
LIMD1Q9UGP4 AC244093.3-201ENST00000615419 411 ntTSL 3 BASIC7.84□□□□□ -1.15
LIMD1Q9UGP4 AC124319.3-201ENST00000616832 526 ntBASIC7.84□□□□□ -1.15
LIMD1Q9UGP4 C9orf153-205ENST00000617985 333 ntAPPRIS ALT2 TSL 5 BASIC7.84□□□□□ -1.15
LIMD1Q9UGP4 AC233702.2-201ENST00000618784 583 ntTSL 4 BASIC7.84□□□□□ -1.15
LIMD1Q9UGP4 AC244472.1-201ENST00000620773 347 ntAPPRIS P1 BASIC7.84□□□□□ -1.15
LIMD1Q9UGP4 AC068189.1-201ENST00000501164 2632 ntTSL 2 BASIC7.84□□□□□ -1.15
LIMD1Q9UGP4 ZNF667-202ENST00000504904 4390 ntAPPRIS P1 TSL 2 BASIC7.84□□□□□ -1.15
LIMD1Q9UGP4 SORBS1-207ENST00000371239 2436 ntAPPRIS ALT2 TSL 5 BASIC7.84□□□□□ -1.15
LIMD1Q9UGP4 SOSTDC1-202ENST00000396652 2411 ntTSL 2 BASIC7.84□□□□□ -1.15
LIMD1Q9UGP4 HDAC2-AS2-208ENST00000519104 2016 ntTSL 1 (best) BASIC7.84□□□□□ -1.15
LIMD1Q9UGP4 LPA-201ENST00000316300 6414 ntAPPRIS P1 TSL 1 (best) BASIC7.84□□□□□ -1.15
LIMD1Q9UGP4 ZFYVE9-204ENST00000371591 4874 ntAPPRIS P4 TSL 1 (best) BASIC7.84□□□□□ -1.15
LIMD1Q9UGP4 UGT2B27P-201ENST00000505092 1620 ntBASIC7.84□□□□□ -1.15
LIMD1Q9UGP4 ADAL-203ENST00000428046 3514 ntTSL 2 BASIC7.84□□□□□ -1.15
LIMD1Q9UGP4 GPX8-203ENST00000503787 1411 ntAPPRIS P1 TSL 1 (best) BASIC7.84□□□□□ -1.15
LIMD1Q9UGP4 ALB-219ENST00000621085 1418 ntTSL 5 BASIC7.84□□□□□ -1.15
LIMD1Q9UGP4 MMS22L-201ENST00000275053 8643 ntAPPRIS P1 TSL 2 BASIC7.84□□□□□ -1.15
LIMD1Q9UGP4 ZSWIM5P3-201ENST00000511265 2743 ntBASIC7.84□□□□□ -1.15
LIMD1Q9UGP4 ANLN-201ENST00000265748 4787 ntAPPRIS P1 TSL 1 (best) BASIC7.84□□□□□ -1.15
LIMD1Q9UGP4 TTTY15-202ENST00000440408 5284 ntTSL 1 (best) BASIC7.84□□□□□ -1.16
LIMD1Q9UGP4 ST7-204ENST00000393444 2113 ntTSL 1 (best) BASIC7.84□□□□□ -1.16
LIMD1Q9UGP4 ERBB3-221ENST00000553131 3237 ntTSL 2 BASIC7.84□□□□□ -1.16
LIMD1Q9UGP4 LINC00689-203ENST00000438049 3946 ntTSL 1 (best) BASIC7.84□□□□□ -1.16
LIMD1Q9UGP4 CTNND1-223ENST00000529986 5727 ntTSL 1 (best) BASIC7.83□□□□□ -1.16
LIMD1Q9UGP4 TNS4-201ENST00000254051 4067 ntAPPRIS P1 TSL 1 (best) BASIC7.83□□□□□ -1.16
LIMD1Q9UGP4 AL031320.2-201ENST00000591892 2079 ntTSL 5 BASIC7.83□□□□□ -1.16
LIMD1Q9UGP4 CNOT7-201ENST00000361272 6913 ntAPPRIS P1 TSL 1 (best) BASIC7.83□□□□□ -1.16
LIMD1Q9UGP4 AC022507.1-201ENST00000548349 1505 ntBASIC7.83□□□□□ -1.16
LIMD1Q9UGP4 ZNF682-209ENST00000597972 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC7.83□□□□□ -1.16
LIMD1Q9UGP4 EIF4G2-205ENST00000525681 3654 ntAPPRIS ALT2 TSL 1 (best) BASIC7.83□□□□□ -1.16
LIMD1Q9UGP4 AP2B1-213ENST00000612116 3483 ntTSL 1 (best) BASIC7.83□□□□□ -1.16
LIMD1Q9UGP4 CCNB3-204ENST00000376042 4693 ntAPPRIS P1 TSL 2 BASIC7.83□□□□□ -1.16
LIMD1Q9UGP4 RNF139-AS1-201ENST00000499418 5654 ntTSL 1 (best) BASIC7.83□□□□□ -1.16
LIMD1Q9UGP4 AC145138.1-201ENST00000512908 2851 ntBASIC7.83□□□□□ -1.16
LIMD1Q9UGP4 AC016747.1-201ENST00000420918 2532 ntTSL 1 (best) BASIC7.83□□□□□ -1.16
LIMD1Q9UGP4 CLEC4E-201ENST00000299663 2159 ntAPPRIS P1 TSL 1 (best) BASIC7.83□□□□□ -1.16
LIMD1Q9UGP4 ZNF33BP1-201ENST00000452497 1834 ntBASIC7.83□□□□□ -1.16
Retrieved 100 of 98,524 protein–RNA pairs in 85.7 ms