Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 WDR12-201ENST00000261015 8100 ntAPPRIS P1 TSL 1 (best) BASIC7.27□□□□□ -1.25
CHMP4AQ9BY43 RNU6-31P-201ENST00000384388 108 ntBASIC7.27□□□□□ -1.25
CHMP4AQ9BY43 TRGV11-201ENST00000390340 463 ntAPPRIS P1 BASIC7.27□□□□□ -1.25
CHMP4AQ9BY43 RNA5SP91-201ENST00000390902 119 ntBASIC7.27□□□□□ -1.25
CHMP4AQ9BY43 METTL15P3-201ENST00000415522 1221 ntBASIC7.27□□□□□ -1.25
CHMP4AQ9BY43 ACAP2-IT1-201ENST00000419899 690 ntTSL 3 BASIC7.27□□□□□ -1.25
CHMP4AQ9BY43 EIF4A1P7-201ENST00000421800 1220 ntBASIC7.27□□□□□ -1.25
CHMP4AQ9BY43 GAPDHP48-201ENST00000436626 961 ntBASIC7.27□□□□□ -1.25
CHMP4AQ9BY43 ELOCP10-201ENST00000440624 327 ntBASIC7.27□□□□□ -1.25
CHMP4AQ9BY43 USP12-AS1-201ENST00000440657 268 ntTSL 5 BASIC7.27□□□□□ -1.25
CHMP4AQ9BY43 SRGAP3-AS4-201ENST00000449023 377 ntTSL 2 BASIC7.27□□□□□ -1.25
CHMP4AQ9BY43 PPIAP20-201ENST00000449839 135 ntBASIC7.27□□□□□ -1.25
CHMP4AQ9BY43 LINC02541-202ENST00000452675 465 ntTSL 5 BASIC7.27□□□□□ -1.25
CHMP4AQ9BY43 AC105021.1-201ENST00000455347 590 ntTSL 3 BASIC7.27□□□□□ -1.25
CHMP4AQ9BY43 LRRC77P-202ENST00000463642 457 ntTSL 4 BASIC7.27□□□□□ -1.25
CHMP4AQ9BY43 AC093719.1-201ENST00000480427 441 ntBASIC7.27□□□□□ -1.25
CHMP4AQ9BY43 LINC00903-201ENST00000497854 223 ntTSL 3 BASIC7.27□□□□□ -1.25
CHMP4AQ9BY43 AC010627.1-201ENST00000503819 1294 ntBASIC7.27□□□□□ -1.25
CHMP4AQ9BY43 CSNK1A1P3-201ENST00000504105 330 ntBASIC7.27□□□□□ -1.25
CHMP4AQ9BY43 FGB-207ENST00000509493 1164 ntTSL 5 BASIC7.27□□□□□ -1.25
CHMP4AQ9BY43 AC093770.1-201ENST00000511559 571 ntBASIC7.27□□□□□ -1.25
CHMP4AQ9BY43 AC108471.1-201ENST00000513977 287 ntBASIC7.27□□□□□ -1.25
CHMP4AQ9BY43 AC064802.1-201ENST00000521523 866 ntTSL 2 BASIC7.27□□□□□ -1.25
CHMP4AQ9BY43 GTF2H1-208ENST00000526630 932 ntTSL 2 BASIC7.27□□□□□ -1.25
CHMP4AQ9BY43 AC067805.1-201ENST00000559344 470 ntBASIC7.27□□□□□ -1.25
CHMP4AQ9BY43 AC239809.3-206ENST00000596091 741 ntTSL 5 BASIC7.27□□□□□ -1.25
CHMP4AQ9BY43 AL049844.2-201ENST00000604280 628 ntBASIC7.27□□□□□ -1.25
CHMP4AQ9BY43 ELOCP34-201ENST00000604436 327 ntBASIC7.27□□□□□ -1.25
CHMP4AQ9BY43 AL163952.1-201ENST00000612704 916 ntTSL 5 BASIC7.27□□□□□ -1.25
CHMP4AQ9BY43 AC245041.2-202ENST00000613389 493 ntTSL 5 BASIC7.27□□□□□ -1.25
CHMP4AQ9BY43 AL139407.1-201ENST00000613826 1175 ntBASIC7.27□□□□□ -1.25
CHMP4AQ9BY43 AL035661.1-201ENST00000620459 1144 ntBASIC7.27□□□□□ -1.25
CHMP4AQ9BY43 SLC35A1-205ENST00000622775 1206 ntTSL 5 BASIC7.27□□□□□ -1.25
CHMP4AQ9BY43 MLF1-208ENST00000478894 1372 ntTSL 2 BASIC7.27□□□□□ -1.25
CHMP4AQ9BY43 RAPGEF2-201ENST00000264431 6949 ntAPPRIS P1 TSL 1 (best) BASIC7.27□□□□□ -1.25
CHMP4AQ9BY43 TTC39C-201ENST00000304621 2304 ntAPPRIS P3 TSL 1 (best) BASIC7.27□□□□□ -1.25
CHMP4AQ9BY43 ZNF559-ZNF177-201ENST00000434737 2340 ntAPPRIS ALT2 TSL 2 BASIC7.27□□□□□ -1.25
CHMP4AQ9BY43 MCMDC2-204ENST00000422365 5096 ntAPPRIS P1 TSL 2 BASIC7.27□□□□□ -1.25
CHMP4AQ9BY43 CRISP1-204ENST00000507853 1793 ntTSL 1 (best) BASIC7.26□□□□□ -1.25
CHMP4AQ9BY43 LINC01197-202ENST00000555332 3568 ntTSL 3 BASIC7.26□□□□□ -1.25
CHMP4AQ9BY43 SMAP1-206ENST00000619054 3150 ntTSL 1 (best) BASIC7.26□□□□□ -1.25
CHMP4AQ9BY43 DNAJA1P3-201ENST00000399417 1194 ntBASIC7.26□□□□□ -1.25
CHMP4AQ9BY43 GSTM3P2-201ENST00000412746 530 ntBASIC7.26□□□□□ -1.25
CHMP4AQ9BY43 AC092570.3-201ENST00000420113 693 ntBASIC7.26□□□□□ -1.25
CHMP4AQ9BY43 AL391987.2-201ENST00000421848 492 ntTSL 5 BASIC7.26□□□□□ -1.25
CHMP4AQ9BY43 LINC00458-201ENST00000423442 1060 ntTSL 1 (best) BASIC7.26□□□□□ -1.25
CHMP4AQ9BY43 USP24P1-201ENST00000433802 779 ntBASIC7.26□□□□□ -1.25
CHMP4AQ9BY43 AP000281.1-201ENST00000444036 316 ntBASIC7.26□□□□□ -1.25
CHMP4AQ9BY43 LINC00448-202ENST00000448411 433 ntTSL 2 BASIC7.26□□□□□ -1.25
CHMP4AQ9BY43 AL450023.1-201ENST00000450868 751 ntBASIC7.26□□□□□ -1.25
CHMP4AQ9BY43 SNORD125-201ENST00000459538 96 ntBASIC7.26□□□□□ -1.25
CHMP4AQ9BY43 PPIAP21-201ENST00000464473 501 ntBASIC7.26□□□□□ -1.25
CHMP4AQ9BY43 CMAHP-205ENST00000471416 1118 ntTSL 2 BASIC7.26□□□□□ -1.25
CHMP4AQ9BY43 PHC3-208ENST00000481639 1075 ntTSL 1 (best) BASIC7.26□□□□□ -1.25
CHMP4AQ9BY43 AC094108.1-201ENST00000502494 527 ntTSL 3 BASIC7.26□□□□□ -1.25
CHMP4AQ9BY43 AC093535.1-203ENST00000512500 730 ntTSL 3 BASIC7.26□□□□□ -1.25
CHMP4AQ9BY43 PMS2P3-207ENST00000529061 717 ntBASIC7.26□□□□□ -1.25
CHMP4AQ9BY43 AC107884.2-201ENST00000530963 550 ntTSL 4 BASIC7.26□□□□□ -1.25
CHMP4AQ9BY43 AC244502.1-203ENST00000541008 576 ntTSL 4 BASIC7.26□□□□□ -1.25
CHMP4AQ9BY43 AC090109.1-201ENST00000548885 819 ntTSL 3 BASIC7.26□□□□□ -1.25
CHMP4AQ9BY43 AC091544.7-201ENST00000554000 240 ntTSL 3 BASIC7.26□□□□□ -1.25
CHMP4AQ9BY43 AL137129.1-201ENST00000555937 720 ntTSL 4 BASIC7.26□□□□□ -1.25
CHMP4AQ9BY43 LINC02284-202ENST00000560924 566 ntTSL 4 BASIC7.26□□□□□ -1.25
CHMP4AQ9BY43 AC027130.1-201ENST00000564490 686 ntTSL 2 BASIC7.26□□□□□ -1.25
CHMP4AQ9BY43 AC025271.2-201ENST00000566990 800 ntTSL 3 BASIC7.26□□□□□ -1.25
CHMP4AQ9BY43 CASC22-201ENST00000569713 386 ntTSL 5 BASIC7.26□□□□□ -1.25
CHMP4AQ9BY43 MIR1273E-201ENST00000581165 102 ntBASIC7.26□□□□□ -1.25
CHMP4AQ9BY43 AC009303.2-201ENST00000585381 1083 ntTSL 3 BASIC7.26□□□□□ -1.25
CHMP4AQ9BY43 AP000904.1-201ENST00000609911 951 ntTSL 3 BASIC7.26□□□□□ -1.25
CHMP4AQ9BY43 BACH1-201ENST00000286800 5669 ntAPPRIS P1 TSL 1 (best) BASIC7.26□□□□□ -1.25
CHMP4AQ9BY43 CD86-204ENST00000469710 1604 ntTSL 2 BASIC7.26□□□□□ -1.25
CHMP4AQ9BY43 ALB-220ENST00000621628 1606 ntTSL 5 BASIC7.26□□□□□ -1.25
CHMP4AQ9BY43 FKBP7-204ENST00000424785 2834 ntAPPRIS P3 TSL 1 (best) BASIC7.26□□□□□ -1.25
CHMP4AQ9BY43 SLMAP-208ENST00000449503 4027 ntTSL 1 (best) BASIC7.26□□□□□ -1.25
CHMP4AQ9BY43 RWDD2A-201ENST00000369724 3744 ntAPPRIS P1 TSL 1 (best) BASIC7.26□□□□□ -1.25
CHMP4AQ9BY43 AC114786.1-201ENST00000512892 1415 ntBASIC7.26□□□□□ -1.25
CHMP4AQ9BY43 SRRM1P3-201ENST00000426911 2678 ntBASIC7.25□□□□□ -1.25
CHMP4AQ9BY43 GEN1-202ENST00000381254 6367 ntAPPRIS P1 TSL 5 BASIC7.25□□□□□ -1.25
CHMP4AQ9BY43 ASNSP1-201ENST00000518311 1939 ntBASIC7.25□□□□□ -1.25
CHMP4AQ9BY43 EYA4-211ENST00000525849 3456 ntTSL 5 BASIC7.25□□□□□ -1.25
CHMP4AQ9BY43 ZRSR2-202ENST00000380308 744 ntTSL 1 (best) BASIC7.25□□□□□ -1.25
CHMP4AQ9BY43 RNU6-152P-201ENST00000384037 107 ntBASIC7.25□□□□□ -1.25
CHMP4AQ9BY43 Z98742.1-201ENST00000419801 632 ntTSL 3 BASIC7.25□□□□□ -1.25
CHMP4AQ9BY43 EEF1B2P6-201ENST00000445713 673 ntBASIC7.25□□□□□ -1.25
CHMP4AQ9BY43 AL512380.1-202ENST00000447728 543 ntTSL 5 BASIC7.25□□□□□ -1.25
CHMP4AQ9BY43 HMGB1P4-201ENST00000455362 567 ntBASIC7.25□□□□□ -1.25
CHMP4AQ9BY43 ATP5J-207ENST00000457143 589 ntTSL 2 BASIC7.25□□□□□ -1.25
CHMP4AQ9BY43 DUTP1-201ENST00000493631 470 ntBASIC7.25□□□□□ -1.25
CHMP4AQ9BY43 AC004069.1-201ENST00000504082 549 ntTSL 4 BASIC7.25□□□□□ -1.25
CHMP4AQ9BY43 AC104212.3-201ENST00000522044 444 ntTSL 3 BASIC7.25□□□□□ -1.25
CHMP4AQ9BY43 AC114947.2-202ENST00000569313 643 ntTSL 3 BASIC7.25□□□□□ -1.25
CHMP4AQ9BY43 RN7SL753P-201ENST00000581238 290 ntBASIC7.25□□□□□ -1.25
CHMP4AQ9BY43 AL136311.1-213ENST00000586466 520 ntTSL 5 BASIC7.25□□□□□ -1.25
CHMP4AQ9BY43 AC060780.2-201ENST00000589047 198 ntBASIC7.25□□□□□ -1.25
CHMP4AQ9BY43 LINC01835-202ENST00000589345 450 ntTSL 3 BASIC7.25□□□□□ -1.25
CHMP4AQ9BY43 LINC01081-201ENST00000597373 465 ntTSL 5 BASIC7.25□□□□□ -1.25
CHMP4AQ9BY43 PPATP2-201ENST00000605635 508 ntBASIC7.25□□□□□ -1.25
CHMP4AQ9BY43 AC073218.2-202ENST00000605962 617 ntTSL 5 BASIC7.25□□□□□ -1.25
CHMP4AQ9BY43 WBP1LP8-201ENST00000617401 327 ntBASIC7.25□□□□□ -1.25
CHMP4AQ9BY43 AL049767.1-202ENST00000637826 242 ntBASIC7.25□□□□□ -1.25
Retrieved 100 of 98,524 protein–RNA pairs in 83.3 ms