Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 NANOGNBP2-201ENST00000544753 553 ntBASIC4.79□□□□□ -1.64
NKX3-1Q99801 AC079600.1-201ENST00000550326 297 ntBASIC4.79□□□□□ -1.64
NKX3-1Q99801 RNASE9-204ENST00000553541 1136 ntAPPRIS P3 TSL 1 (best) BASIC4.79□□□□□ -1.64
NKX3-1Q99801 AC027216.1-201ENST00000577726 685 ntBASIC4.79□□□□□ -1.64
NKX3-1Q99801 AC009237.13-201ENST00000603193 276 ntBASIC4.79□□□□□ -1.64
NKX3-1Q99801 AC008555.3-201ENST00000603717 442 ntTSL 3 BASIC4.79□□□□□ -1.64
NKX3-1Q99801 AC006363.1-201ENST00000603806 463 ntBASIC4.79□□□□□ -1.64
NKX3-1Q99801 AL159169.2-201ENST00000610061 1269 ntBASIC4.79□□□□□ -1.64
NKX3-1Q99801 AC090607.5-201ENST00000615692 224 ntBASIC4.79□□□□□ -1.64
NKX3-1Q99801 AC015722.2-201ENST00000622210 551 ntBASIC4.79□□□□□ -1.64
NKX3-1Q99801 AL139220.2-221ENST00000628123 395 ntTSL 5 BASIC4.79□□□□□ -1.64
NKX3-1Q99801 RBMS3-AS2-206ENST00000629296 438 ntTSL 5 BASIC4.79□□□□□ -1.64
NKX3-1Q99801 5S_rRNA.28-201ENST00000638107 119 ntBASIC4.79□□□□□ -1.64
NKX3-1Q99801 AC011287.1-204ENST00000640300 1213 ntTSL 5 BASIC4.79□□□□□ -1.64
NKX3-1Q99801 SEC24D-211ENST00000511481 2626 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
NKX3-1Q99801 FSHB-202ENST00000417547 1890 ntAPPRIS P1 TSL 5 BASIC4.79□□□□□ -1.64
NKX3-1Q99801 MMAA-205ENST00000541599 1437 ntTSL 5 BASIC4.79□□□□□ -1.64
NKX3-1Q99801 ARHGAP21-202ENST00000376410 3526 ntTSL 5 BASIC4.79□□□□□ -1.64
NKX3-1Q99801 AL355306.2-206ENST00000635233 1903 ntTSL 5 BASIC4.78□□□□□ -1.64
NKX3-1Q99801 MYO9A-203ENST00000444904 7749 ntAPPRIS P2 TSL 5 BASIC4.78□□□□□ -1.64
NKX3-1Q99801 PCDH15-217ENST00000414778 9234 ntAPPRIS ALT2 TSL 5 BASIC4.78□□□□□ -1.64
NKX3-1Q99801 PCDH15-227ENST00000614895 9249 ntAPPRIS ALT2 TSL 5 BASIC4.78□□□□□ -1.64
NKX3-1Q99801 TRPC4-205ENST00000379679 2475 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
NKX3-1Q99801 TMEM99-201ENST00000301665 2058 ntAPPRIS P2 TSL 2 BASIC4.78□□□□□ -1.64
NKX3-1Q99801 OR52B3P-201ENST00000314715 928 ntBASIC4.78□□□□□ -1.64
NKX3-1Q99801 TMSB4XP4-201ENST00000323496 618 ntBASIC4.78□□□□□ -1.64
NKX3-1Q99801 RN7SKP69-201ENST00000365390 305 ntBASIC4.78□□□□□ -1.64
NKX3-1Q99801 MIR323B-201ENST00000385269 82 ntBASIC4.78□□□□□ -1.64
NKX3-1Q99801 AC092642.1-201ENST00000392417 425 ntBASIC4.78□□□□□ -1.64
NKX3-1Q99801 RNASE11-202ENST00000398009 1034 ntAPPRIS P2 TSL 5 BASIC4.78□□□□□ -1.64
NKX3-1Q99801 PPIAP9-201ENST00000403866 498 ntBASIC4.78□□□□□ -1.64
NKX3-1Q99801 FO393401.1-203ENST00000416260 486 ntTSL 5 BASIC4.78□□□□□ -1.64
NKX3-1Q99801 AC092687.1-201ENST00000418835 389 ntTSL 3 BASIC4.78□□□□□ -1.64
NKX3-1Q99801 AP001476.3-201ENST00000429512 415 ntTSL 3 BASIC4.78□□□□□ -1.64
NKX3-1Q99801 AC060234.3-201ENST00000430438 559 ntTSL 5 BASIC4.78□□□□□ -1.64
NKX3-1Q99801 HMGB3P24-201ENST00000433260 622 ntBASIC4.78□□□□□ -1.64
NKX3-1Q99801 AC073109.1-201ENST00000445066 978 ntBASIC4.78□□□□□ -1.64
NKX3-1Q99801 RPL36AP39-201ENST00000445859 318 ntBASIC4.78□□□□□ -1.64
NKX3-1Q99801 AC003991.1-202ENST00000447058 777 ntTSL 3 BASIC4.78□□□□□ -1.64
NKX3-1Q99801 CCRL1P1-201ENST00000449542 1053 ntBASIC4.78□□□□□ -1.64
NKX3-1Q99801 GAPDHP14-201ENST00000450472 937 ntBASIC4.78□□□□□ -1.64
NKX3-1Q99801 AL590652.1-201ENST00000453790 850 ntTSL 3 BASIC4.78□□□□□ -1.64
NKX3-1Q99801 AC083899.1-201ENST00000454465 3819 ntBASIC4.78□□□□□ -1.64
NKX3-1Q99801 AZGP1P2-201ENST00000454506 345 ntBASIC4.78□□□□□ -1.64
NKX3-1Q99801 LINC01941-201ENST00000455174 624 ntTSL 2 BASIC4.78□□□□□ -1.64
NKX3-1Q99801 RPS23P6-201ENST00000466136 431 ntBASIC4.78□□□□□ -1.64
NKX3-1Q99801 LINC02066-201ENST00000492731 580 ntTSL 4 BASIC4.78□□□□□ -1.64
NKX3-1Q99801 SUCLG2-AS1-203ENST00000496640 862 ntTSL 5 BASIC4.78□□□□□ -1.64
NKX3-1Q99801 IGBP1P4-201ENST00000503202 879 ntBASIC4.78□□□□□ -1.64
NKX3-1Q99801 MTND3P3-201ENST00000505004 126 ntBASIC4.78□□□□□ -1.64
NKX3-1Q99801 MTND3P24-201ENST00000506306 329 ntBASIC4.78□□□□□ -1.64
NKX3-1Q99801 AC122710.1-201ENST00000510622 553 ntTSL 5 BASIC4.78□□□□□ -1.64
NKX3-1Q99801 HMGB1P47-201ENST00000511281 589 ntBASIC4.78□□□□□ -1.64
NKX3-1Q99801 MTATP6P1-201ENST00000514057 681 ntBASIC4.78□□□□□ -1.64
NKX3-1Q99801 SNORD46.2-201ENST00000516021 102 ntBASIC4.78□□□□□ -1.64
NKX3-1Q99801 SNORA26.10-201ENST00000516427 141 ntBASIC4.78□□□□□ -1.64
NKX3-1Q99801 FTH1P11-201ENST00000517577 551 ntBASIC4.78□□□□□ -1.64
NKX3-1Q99801 AC020937.1-201ENST00000519677 1013 ntBASIC4.78□□□□□ -1.64
NKX3-1Q99801 AP000873.2-205ENST00000529031 435 ntTSL 2 BASIC4.78□□□□□ -1.64
NKX3-1Q99801 PMS2P3-207ENST00000529061 717 ntBASIC4.78□□□□□ -1.64
NKX3-1Q99801 OR8G3P-201ENST00000533406 921 ntBASIC4.78□□□□□ -1.64
NKX3-1Q99801 AC110275.1-201ENST00000534420 623 ntAPPRIS P1 TSL 4 BASIC4.78□□□□□ -1.64
NKX3-1Q99801 AC008149.1-201ENST00000551844 525 ntTSL 4 BASIC4.78□□□□□ -1.64
NKX3-1Q99801 AL359219.2-201ENST00000555184 348 ntBASIC4.78□□□□□ -1.64
NKX3-1Q99801 FRMD6-AS2-201ENST00000556617 548 ntTSL 4 BASIC4.78□□□□□ -1.64
NKX3-1Q99801 AC021351.1-202ENST00000561394 701 ntTSL 3 BASIC4.78□□□□□ -1.64
NKX3-1Q99801 THCAT158-201ENST00000575039 535 ntTSL 5 BASIC4.78□□□□□ -1.64
NKX3-1Q99801 AP005403.1-201ENST00000579720 229 ntBASIC4.78□□□□□ -1.64
NKX3-1Q99801 AC015802.2-201ENST00000589690 189 ntBASIC4.78□□□□□ -1.64
NKX3-1Q99801 AL157938.2-208ENST00000590461 877 ntTSL 5 BASIC4.78□□□□□ -1.64
NKX3-1Q99801 COX6CP7-201ENST00000597056 208 ntBASIC4.78□□□□□ -1.64
NKX3-1Q99801 UBE2E3-208ENST00000602632 446 ntTSL 2 BASIC4.78□□□□□ -1.64
NKX3-1Q99801 LINC00458-206ENST00000607494 849 ntTSL 3 BASIC4.78□□□□□ -1.64
NKX3-1Q99801 AL139124.1-201ENST00000609123 421 ntBASIC4.78□□□□□ -1.64
NKX3-1Q99801 SRSF11-201ENST00000370949 3034 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
NKX3-1Q99801 MRE11-203ENST00000393241 2604 ntAPPRIS ALT1 TSL 5 BASIC4.78□□□□□ -1.64
NKX3-1Q99801 AC093155.3-201ENST00000370548 2013 ntAPPRIS P1 TSL 2 BASIC4.78□□□□□ -1.64
NKX3-1Q99801 UACA-211ENST00000560441 4723 ntAPPRIS ALT2 TSL 5 BASIC4.78□□□□□ -1.64
NKX3-1Q99801 HERC4-205ENST00000412272 4211 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
NKX3-1Q99801 ZNF790-201ENST00000356725 3037 ntAPPRIS P1 TSL 2 BASIC4.78□□□□□ -1.64
NKX3-1Q99801 PSG7-206ENST00000623675 1392 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
NKX3-1Q99801 AC067956.1-201ENST00000414512 2062 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
NKX3-1Q99801 VPS13D-214ENST00000620676 16320 ntAPPRIS P4 TSL 1 (best) BASIC4.77□□□□□ -1.65
NKX3-1Q99801 BBX-204ENST00000406780 3674 ntAPPRIS P3 TSL 5 BASIC4.77□□□□□ -1.65
NKX3-1Q99801 RAPH1-207ENST00000423104 1860 ntAPPRIS ALT2 TSL 5 BASIC4.77□□□□□ -1.65
NKX3-1Q99801 LINC01619-207ENST00000551843 2205 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
NKX3-1Q99801 ZNF143-201ENST00000299606 2562 ntTSL 5 BASIC4.77□□□□□ -1.65
NKX3-1Q99801 AC097512.1-201ENST00000511453 1309 ntTSL 3 BASIC4.77□□□□□ -1.65
NKX3-1Q99801 AC004784.1-201ENST00000635495 1833 ntTSL 5 BASIC4.77□□□□□ -1.65
NKX3-1Q99801 RALGAPB-202ENST00000397040 8435 ntAPPRIS P3 TSL 1 (best) BASIC4.77□□□□□ -1.65
NKX3-1Q99801 TAAR1-201ENST00000275216 1020 ntAPPRIS P1 BASIC4.77□□□□□ -1.65
NKX3-1Q99801 MOXD1-201ENST00000336749 2950 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
NKX3-1Q99801 RNA5SP284-201ENST00000384547 118 ntBASIC4.77□□□□□ -1.65
NKX3-1Q99801 KRTAP29-1-201ENST00000391353 1026 ntAPPRIS P1 BASIC4.77□□□□□ -1.65
NKX3-1Q99801 AC245060.4-201ENST00000413293 1121 ntBASIC4.77□□□□□ -1.65
NKX3-1Q99801 ERI3-IT1-201ENST00000414156 619 ntTSL 3 BASIC4.77□□□□□ -1.65
NKX3-1Q99801 CA1-201ENST00000431316 1232 ntAPPRIS P1 TSL 5 BASIC4.77□□□□□ -1.65
NKX3-1Q99801 AL031599.1-201ENST00000432694 808 ntTSL 3 BASIC4.77□□□□□ -1.65
NKX3-1Q99801 AC006335.2-201ENST00000437993 330 ntBASIC4.77□□□□□ -1.65
NKX3-1Q99801 VN1R110P-201ENST00000438988 971 ntBASIC4.77□□□□□ -1.65
Retrieved 100 of 98,524 protein–RNA pairs in 95 ms