Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 LINC00700-201ENST00000413603 2097 ntTSL 2 BASIC6.17□□□□□ -1.42
USP39Q53GS9 ZNF268-205ENST00000536435 13475 ntAPPRIS P1 TSL 1 (best) BASIC6.17□□□□□ -1.42
USP39Q53GS9 AC123769.1-201ENST00000530992 3192 ntBASIC6.17□□□□□ -1.42
USP39Q53GS9 CWF19L2-201ENST00000282251 3278 ntAPPRIS P1 TSL 1 (best) BASIC6.17□□□□□ -1.42
USP39Q53GS9 ZNF729-201ENST00000601693 3877 ntAPPRIS P1 TSL 2 BASIC6.17□□□□□ -1.42
USP39Q53GS9 AP000547.3-204ENST00000588548 2523 ntBASIC6.17□□□□□ -1.42
USP39Q53GS9 LDAH-212ENST00000619656 3663 ntTSL 2 BASIC6.17□□□□□ -1.42
USP39Q53GS9 AC011416.1-201ENST00000514947 1732 ntBASIC6.16□□□□□ -1.42
USP39Q53GS9 AC009404.1-201ENST00000420330 3090 ntTSL 3 BASIC6.16□□□□□ -1.42
USP39Q53GS9 CTTNBP2NL-201ENST00000271277 5897 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
USP39Q53GS9 RBMY1F-201ENST00000303766 1887 ntAPPRIS P5 TSL 1 (best) BASIC6.16□□□□□ -1.42
USP39Q53GS9 ZNF735-201ENST00000429565 1570 ntAPPRIS P1 TSL 5 BASIC6.16□□□□□ -1.42
USP39Q53GS9 CLEC2D-201ENST00000261339 465 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
USP39Q53GS9 XAGE5-201ENST00000351072 478 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
USP39Q53GS9 RNA5SP478-201ENST00000364657 115 ntBASIC6.16□□□□□ -1.42
USP39Q53GS9 C20orf187-201ENST00000378252 446 ntTSL 2 BASIC6.16□□□□□ -1.42
USP39Q53GS9 SMARCA2-207ENST00000382186 955 ntTSL 3 BASIC6.16□□□□□ -1.42
USP39Q53GS9 AC068286.1-201ENST00000416173 467 ntTSL 4 BASIC6.16□□□□□ -1.42
USP39Q53GS9 AL391645.1-201ENST00000417409 506 ntTSL 3 BASIC6.16□□□□□ -1.42
USP39Q53GS9 OFD1P11Y-201ENST00000418213 1177 ntBASIC6.16□□□□□ -1.42
USP39Q53GS9 AC000123.1-201ENST00000418215 516 ntTSL 5 BASIC6.16□□□□□ -1.42
USP39Q53GS9 CYP4F30P-202ENST00000420048 405 ntBASIC6.16□□□□□ -1.42
USP39Q53GS9 MFSD13B-201ENST00000420133 1290 ntBASIC6.16□□□□□ -1.42
USP39Q53GS9 SOS1-IT1-201ENST00000420644 539 ntTSL 5 BASIC6.16□□□□□ -1.42
USP39Q53GS9 TMEM246-AS1-202ENST00000425734 466 ntTSL 2 BASIC6.16□□□□□ -1.42
USP39Q53GS9 AL390023.1-201ENST00000428836 262 ntBASIC6.16□□□□□ -1.42
USP39Q53GS9 AC108051.1-201ENST00000435291 549 ntTSL 3 BASIC6.16□□□□□ -1.42
USP39Q53GS9 UBE2D3P1-201ENST00000436669 444 ntBASIC6.16□□□□□ -1.42
USP39Q53GS9 PCBP2P1-201ENST00000437262 977 ntBASIC6.16□□□□□ -1.42
USP39Q53GS9 MTCYBP39-201ENST00000437562 491 ntBASIC6.16□□□□□ -1.42
USP39Q53GS9 AL139161.2-201ENST00000438371 740 ntTSL 3 BASIC6.16□□□□□ -1.42
USP39Q53GS9 AL358794.1-201ENST00000445689 381 ntBASIC6.16□□□□□ -1.42
USP39Q53GS9 MTND2P19-201ENST00000449129 1012 ntBASIC6.16□□□□□ -1.42
USP39Q53GS9 AL157371.1-201ENST00000451910 394 ntTSL 3 BASIC6.16□□□□□ -1.42
USP39Q53GS9 AP002371.1-201ENST00000463604 433 ntBASIC6.16□□□□□ -1.42
USP39Q53GS9 MTND4LP3-201ENST00000468320 276 ntBASIC6.16□□□□□ -1.42
USP39Q53GS9 TM4SF1-AS1-201ENST00000484046 488 ntTSL 3 BASIC6.16□□□□□ -1.42
USP39Q53GS9 LINC02049-201ENST00000490647 747 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
USP39Q53GS9 RN7SL284P-201ENST00000498823 275 ntBASIC6.16□□□□□ -1.42
USP39Q53GS9 PPM1AP1-201ENST00000502740 1135 ntBASIC6.16□□□□□ -1.42
USP39Q53GS9 GIN1-203ENST00000508629 1040 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
USP39Q53GS9 RNA5SP116-201ENST00000516132 98 ntBASIC6.16□□□□□ -1.42
USP39Q53GS9 TATDN1-202ENST00000517678 815 ntTSL 3 BASIC6.16□□□□□ -1.42
USP39Q53GS9 TATDN1-206ENST00000519548 889 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
USP39Q53GS9 AC091819.2-201ENST00000522292 490 ntTSL 3 BASIC6.16□□□□□ -1.42
USP39Q53GS9 ASPH-224ENST00000522603 842 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
USP39Q53GS9 OR7E10P-201ENST00000526420 991 ntBASIC6.16□□□□□ -1.42
USP39Q53GS9 MTND4LP18-201ENST00000526864 291 ntBASIC6.16□□□□□ -1.42
USP39Q53GS9 RRAS2-205ENST00000529237 1278 ntTSL 2 BASIC6.16□□□□□ -1.42
USP39Q53GS9 LINC02290-201ENST00000554187 608 ntTSL 4 BASIC6.16□□□□□ -1.42
USP39Q53GS9 AC022404.1-201ENST00000555320 273 ntBASIC6.16□□□□□ -1.42
USP39Q53GS9 AC010735.1-201ENST00000567305 1026 ntBASIC6.16□□□□□ -1.42
USP39Q53GS9 AC129507.1-204ENST00000573601 503 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
USP39Q53GS9 AP000897.2-201ENST00000579509 1057 ntTSL 3 BASIC6.16□□□□□ -1.42
USP39Q53GS9 AP001496.3-201ENST00000580230 913 ntBASIC6.16□□□□□ -1.42
USP39Q53GS9 AC011476.3-202ENST00000586845 553 ntTSL 3 BASIC6.16□□□□□ -1.42
USP39Q53GS9 ZNF738-205ENST00000597810 747 ntAPPRIS ALT2 TSL 3 BASIC6.16□□□□□ -1.42
USP39Q53GS9 AC245100.7-201ENST00000609678 442 ntBASIC6.16□□□□□ -1.42
USP39Q53GS9 AC006924.1-201ENST00000610750 559 ntBASIC6.16□□□□□ -1.42
USP39Q53GS9 MIR6809-201ENST00000612189 116 ntBASIC6.16□□□□□ -1.42
USP39Q53GS9 AC123768.3-201ENST00000613733 523 ntTSL 3 BASIC6.16□□□□□ -1.42
USP39Q53GS9 AC025016.1-201ENST00000616746 682 ntBASIC6.16□□□□□ -1.42
USP39Q53GS9 AP000676.3-201ENST00000623299 569 ntBASIC6.16□□□□□ -1.42
USP39Q53GS9 AC018628.1-201ENST00000624147 3819 ntBASIC6.16□□□□□ -1.42
USP39Q53GS9 METTL9-211ENST00000615720 2890 ntTSL 2 BASIC6.16□□□□□ -1.42
USP39Q53GS9 ECT2L-205ENST00000541398 4483 ntAPPRIS P1 TSL 5 BASIC6.16□□□□□ -1.42
USP39Q53GS9 HEATR1-203ENST00000366582 8447 ntAPPRIS P1 TSL 5 BASIC6.16□□□□□ -1.42
USP39Q53GS9 AC016907.2-203ENST00000455424 3563 ntTSL 3 BASIC6.16□□□□□ -1.42
USP39Q53GS9 LINC02060-201ENST00000506041 1626 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
USP39Q53GS9 KLHL28-202ENST00000396128 6545 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
USP39Q53GS9 ZC3H14-201ENST00000251038 18281 ntAPPRIS P3 TSL 1 (best) BASIC6.16□□□□□ -1.42
USP39Q53GS9 KLRC1-201ENST00000347831 1332 ntAPPRIS ALT2 TSL 1 (best) BASIC6.16□□□□□ -1.42
USP39Q53GS9 CASC11-201ENST00000502463 3301 ntTSL 2 BASIC6.16□□□□□ -1.42
USP39Q53GS9 TBC1D23-202ENST00000394144 3677 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
USP39Q53GS9 GABRA3-204ENST00000535043 1697 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
USP39Q53GS9 MMP13-201ENST00000260302 2716 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
USP39Q53GS9 DSC3-201ENST00000360428 6939 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
USP39Q53GS9 SMC2-202ENST00000374787 4266 ntAPPRIS P1 TSL 2 BASIC6.16□□□□□ -1.42
USP39Q53GS9 MTRNR2L13-201ENST00000604093 1445 ntAPPRIS P1 BASIC6.16□□□□□ -1.42
USP39Q53GS9 PUM1-207ENST00000440538 3936 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
USP39Q53GS9 ZNF184-202ENST00000377419 2899 ntAPPRIS P1 TSL 4 BASIC6.16□□□□□ -1.42
USP39Q53GS9 AMOT-206ENST00000524145 3330 ntAPPRIS ALT2 TSL 5 BASIC6.15□□□□□ -1.42
USP39Q53GS9 ATP2C1-203ENST00000422190 3386 ntTSL 1 (best) BASIC6.15□□□□□ -1.42
USP39Q53GS9 DZIP3-202ENST00000463306 4246 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.42
USP39Q53GS9 POT1-202ENST00000393329 3950 ntTSL 5 BASIC6.15□□□□□ -1.42
USP39Q53GS9 ZNF192P1-201ENST00000440790 1628 ntTSL 5 BASIC6.15□□□□□ -1.42
USP39Q53GS9 AL353763.1-201ENST00000624467 1628 ntBASIC6.15□□□□□ -1.42
USP39Q53GS9 NDRG3-202ENST00000359675 2917 ntAPPRIS ALT1 TSL 1 (best) BASIC6.15□□□□□ -1.42
USP39Q53GS9 EIF1B-201ENST00000232905 1010 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.42
USP39Q53GS9 SPINK14-201ENST00000356972 294 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.42
USP39Q53GS9 WFDC8-202ENST00000357199 1268 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.42
USP39Q53GS9 OR5B17-201ENST00000357377 946 ntAPPRIS P1 BASIC6.15□□□□□ -1.42
USP39Q53GS9 RAET1L-202ENST00000367341 1285 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.42
USP39Q53GS9 OR6C3-201ENST00000379667 936 ntAPPRIS P1 BASIC6.15□□□□□ -1.42
USP39Q53GS9 RNU4-27P-201ENST00000410889 139 ntBASIC6.15□□□□□ -1.42
USP39Q53GS9 AL022337.1-201ENST00000434510 357 ntTSL 3 BASIC6.15□□□□□ -1.42
USP39Q53GS9 TPTE2P6-202ENST00000445572 1007 ntBASIC6.15□□□□□ -1.42
USP39Q53GS9 AL161722.1-201ENST00000446972 1032 ntBASIC6.15□□□□□ -1.42
USP39Q53GS9 OARD1-207ENST00000468811 819 ntAPPRIS P1 TSL 2 BASIC6.15□□□□□ -1.42
USP39Q53GS9 LINC01214-201ENST00000471222 335 ntTSL 5 BASIC6.15□□□□□ -1.42
Retrieved 100 of 98,524 protein–RNA pairs in 76.3 ms