Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 HMMR-204ENST00000432118 2084 ntAPPRIS ALT2 TSL 2 BASIC5.74□□□□□ -1.49
PTCHD3Q3KNS1 NOSTRIN-201ENST00000317647 2294 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
PTCHD3Q3KNS1 NOL8-214ENST00000535387 3390 ntAPPRIS ALT2 TSL 5 BASIC5.74□□□□□ -1.49
PTCHD3Q3KNS1 GRIK2-203ENST00000369134 4185 ntTSL 5 BASIC5.74□□□□□ -1.49
PTCHD3Q3KNS1 ZNF160-203ENST00000429604 4336 ntAPPRIS P1 TSL 3 BASIC5.74□□□□□ -1.49
PTCHD3Q3KNS1 NLRP11-201ENST00000589093 3417 ntAPPRIS P2 TSL 1 (best) BASIC5.74□□□□□ -1.49
PTCHD3Q3KNS1 LINC00906-206ENST00000589921 3444 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
PTCHD3Q3KNS1 AC140479.2-201ENST00000421567 3130 ntBASIC5.74□□□□□ -1.49
PTCHD3Q3KNS1 ZC3H7A-214ENST00000575984 2632 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
PTCHD3Q3KNS1 AC007342.7-201ENST00000624610 2337 ntBASIC5.74□□□□□ -1.49
PTCHD3Q3KNS1 LINC01844-201ENST00000432677 2237 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
PTCHD3Q3KNS1 SLX4IP-201ENST00000334534 6062 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
PTCHD3Q3KNS1 KIAA1328-201ENST00000280020 4853 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
PTCHD3Q3KNS1 WDR95P-201ENST00000425638 1542 ntBASIC5.74□□□□□ -1.49
PTCHD3Q3KNS1 PCF11-AS1-201ENST00000602322 1516 ntBASIC5.74□□□□□ -1.49
PTCHD3Q3KNS1 SAMMSON-210ENST00000641260 1308 ntBASIC5.74□□□□□ -1.49
PTCHD3Q3KNS1 OBSCN-201ENST00000284548 20432 ntTSL 2 BASIC5.73□□□□□ -1.49
PTCHD3Q3KNS1 LRRC49-201ENST00000260382 2784 ntAPPRIS P3 TSL 1 (best) BASIC5.73□□□□□ -1.49
PTCHD3Q3KNS1 KLHL13-206ENST00000469946 2353 ntTSL 2 BASIC5.73□□□□□ -1.49
PTCHD3Q3KNS1 ARHGAP20-206ENST00000533353 6066 ntAPPRIS ALT2 TSL 1 (best) BASIC5.73□□□□□ -1.49
PTCHD3Q3KNS1 SLAMF6-202ENST00000368057 2712 ntAPPRIS ALT2 TSL 1 (best) BASIC5.73□□□□□ -1.49
PTCHD3Q3KNS1 TMBIM4-201ENST00000286424 989 ntTSL 5 BASIC5.73□□□□□ -1.49
PTCHD3Q3KNS1 CLEC4A-203ENST00000352620 615 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
PTCHD3Q3KNS1 CLEC4A-204ENST00000360500 597 ntTSL 5 BASIC5.73□□□□□ -1.49
PTCHD3Q3KNS1 KRTAP22-2-201ENST00000382830 293 ntAPPRIS P1 BASIC5.73□□□□□ -1.49
PTCHD3Q3KNS1 TRGV10-201ENST00000390341 512 ntAPPRIS P1 BASIC5.73□□□□□ -1.49
PTCHD3Q3KNS1 AL031985.1-201ENST00000392713 418 ntBASIC5.73□□□□□ -1.49
PTCHD3Q3KNS1 SAMD13-206ENST00000394834 785 ntAPPRIS P1 TSL 2 BASIC5.73□□□□□ -1.49
PTCHD3Q3KNS1 CCDC18-AS1-205ENST00000421202 2973 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
PTCHD3Q3KNS1 AC093084.1-201ENST00000424233 687 ntBASIC5.73□□□□□ -1.49
PTCHD3Q3KNS1 BX323845.3-201ENST00000428215 527 ntBASIC5.73□□□□□ -1.49
PTCHD3Q3KNS1 C1orf143-201ENST00000443836 762 ntTSL 2 BASIC5.73□□□□□ -1.49
PTCHD3Q3KNS1 CCDC17-203ENST00000445048 443 ntAPPRIS ALT2 TSL 1 (best) BASIC5.73□□□□□ -1.49
PTCHD3Q3KNS1 MACROD2-IT1-201ENST00000448536 665 ntTSL 5 BASIC5.73□□□□□ -1.49
PTCHD3Q3KNS1 AC132807.1-201ENST00000449613 458 ntTSL 3 BASIC5.73□□□□□ -1.49
PTCHD3Q3KNS1 AL158069.1-201ENST00000454131 455 ntTSL 5 BASIC5.73□□□□□ -1.49
PTCHD3Q3KNS1 OR2AF1P-201ENST00000454899 889 ntBASIC5.73□□□□□ -1.49
PTCHD3Q3KNS1 AC018638.3-201ENST00000461273 132 ntBASIC5.73□□□□□ -1.49
PTCHD3Q3KNS1 AC079080.1-201ENST00000479841 822 ntBASIC5.73□□□□□ -1.49
PTCHD3Q3KNS1 LINC01340-201ENST00000504012 724 ntTSL 3 BASIC5.73□□□□□ -1.49
PTCHD3Q3KNS1 MTATP6P1-201ENST00000514057 681 ntBASIC5.73□□□□□ -1.49
PTCHD3Q3KNS1 RN7SKP141-201ENST00000516167 338 ntBASIC5.73□□□□□ -1.49
PTCHD3Q3KNS1 LINC00861-202ENST00000517869 606 ntTSL 5 BASIC5.73□□□□□ -1.49
PTCHD3Q3KNS1 LINC01339-203ENST00000519336 561 ntTSL 3 BASIC5.73□□□□□ -1.49
PTCHD3Q3KNS1 WBP1LP3-201ENST00000523033 208 ntBASIC5.73□□□□□ -1.49
PTCHD3Q3KNS1 AC090424.1-201ENST00000535243 736 ntBASIC5.73□□□□□ -1.49
PTCHD3Q3KNS1 AL133304.2-201ENST00000546376 886 ntTSL 2 BASIC5.73□□□□□ -1.49
PTCHD3Q3KNS1 LINC02319-201ENST00000555852 349 ntTSL 3 BASIC5.73□□□□□ -1.49
PTCHD3Q3KNS1 NPM1P42-201ENST00000560329 862 ntBASIC5.73□□□□□ -1.49
PTCHD3Q3KNS1 GARSP1-201ENST00000570895 719 ntBASIC5.73□□□□□ -1.49
PTCHD3Q3KNS1 AC100844.1-201ENST00000580622 440 ntTSL 5 BASIC5.73□□□□□ -1.49
PTCHD3Q3KNS1 AP001357.1-201ENST00000586304 1053 ntBASIC5.73□□□□□ -1.49
PTCHD3Q3KNS1 AC006115.2-201ENST00000596823 202 ntBASIC5.73□□□□□ -1.49
PTCHD3Q3KNS1 AC234772.3-201ENST00000602277 528 ntBASIC5.73□□□□□ -1.49
PTCHD3Q3KNS1 AP001267.4-201ENST00000602598 545 ntBASIC5.73□□□□□ -1.49
PTCHD3Q3KNS1 AL353804.2-201ENST00000603360 347 ntTSL 5 BASIC5.73□□□□□ -1.49
PTCHD3Q3KNS1 THRA1/BTR-203ENST00000604191 571 ntTSL 4 BASIC5.73□□□□□ -1.49
PTCHD3Q3KNS1 LINC01050-201ENST00000604485 760 ntTSL 3 BASIC5.73□□□□□ -1.49
PTCHD3Q3KNS1 AL157392.4-201ENST00000609756 345 ntBASIC5.73□□□□□ -1.49
PTCHD3Q3KNS1 MIR6793-201ENST00000612376 63 ntBASIC5.73□□□□□ -1.49
PTCHD3Q3KNS1 AC009159.2-201ENST00000617603 606 ntBASIC5.73□□□□□ -1.49
PTCHD3Q3KNS1 ATL2-217ENST00000629272 1242 ntTSL 5 BASIC5.73□□□□□ -1.49
PTCHD3Q3KNS1 SATB1-AS1-259ENST00000629477 853 ntTSL 5 BASIC5.73□□□□□ -1.49
PTCHD3Q3KNS1 METTL15-211ENST00000634762 718 ntTSL 5 BASIC5.73□□□□□ -1.49
PTCHD3Q3KNS1 5S_rRNA.28-201ENST00000638107 119 ntBASIC5.73□□□□□ -1.49
PTCHD3Q3KNS1 GPR85-202ENST00000424100 2895 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
PTCHD3Q3KNS1 AMD1-204ENST00000368885 3438 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
PTCHD3Q3KNS1 C15orf41-201ENST00000338183 2578 ntTSL 5 BASIC5.73□□□□□ -1.49
PTCHD3Q3KNS1 ZNF432-202ENST00000594154 4513 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
PTCHD3Q3KNS1 CRB1-211ENST00000638467 4348 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
PTCHD3Q3KNS1 CTAGE5-204ENST00000341749 2912 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
PTCHD3Q3KNS1 PTPRR-204ENST00000440835 2818 ntAPPRIS ALT2 TSL 1 (best) BASIC5.73□□□□□ -1.49
PTCHD3Q3KNS1 ZNF682-201ENST00000358523 2161 ntTSL 2 BASIC5.73□□□□□ -1.49
PTCHD3Q3KNS1 ZNF850-202ENST00000591344 7714 ntAPPRIS P3 TSL 1 (best) BASIC5.73□□□□□ -1.49
PTCHD3Q3KNS1 GYPA-212ENST00000616983 2538 ntAPPRIS ALT2 TSL 5 BASIC5.73□□□□□ -1.49
PTCHD3Q3KNS1 RPL23AP82-206ENST00000480246 2987 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
PTCHD3Q3KNS1 AC092451.3-201ENST00000625067 1343 ntBASIC5.73□□□□□ -1.49
PTCHD3Q3KNS1 LINC01153-201ENST00000429809 2864 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
PTCHD3Q3KNS1 AC245100.2-201ENST00000454544 1679 ntBASIC5.72□□□□□ -1.49
PTCHD3Q3KNS1 CRB1-203ENST00000367400 4932 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
PTCHD3Q3KNS1 WDR64-201ENST00000366552 4371 ntAPPRIS P1 TSL 5 BASIC5.72□□□□□ -1.49
PTCHD3Q3KNS1 RPGRIP1-201ENST00000382933 2004 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
PTCHD3Q3KNS1 MAPK10-370ENST00000641943 4117 ntAPPRIS P2 BASIC5.72□□□□□ -1.49
PTCHD3Q3KNS1 FGL2-201ENST00000248598 4261 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
PTCHD3Q3KNS1 HIST1H1A-201ENST00000244573 648 ntAPPRIS P1 BASIC5.72□□□□□ -1.49
PTCHD3Q3KNS1 REP15-201ENST00000310791 1078 ntAPPRIS P1 BASIC5.72□□□□□ -1.49
PTCHD3Q3KNS1 OR52B3P-201ENST00000314715 928 ntBASIC5.72□□□□□ -1.49
PTCHD3Q3KNS1 RN7SKP128-201ENST00000364270 303 ntBASIC5.72□□□□□ -1.49
PTCHD3Q3KNS1 RN7SKP69-201ENST00000365390 305 ntBASIC5.72□□□□□ -1.49
PTCHD3Q3KNS1 TOMM7-203ENST00000405021 455 ntTSL 2 BASIC5.72□□□□□ -1.49
PTCHD3Q3KNS1 AL160163.1-201ENST00000417465 403 ntTSL 3 BASIC5.72□□□□□ -1.49
PTCHD3Q3KNS1 AC104389.1-201ENST00000418080 522 ntTSL 3 BASIC5.72□□□□□ -1.49
PTCHD3Q3KNS1 AC104843.2-201ENST00000427666 297 ntBASIC5.72□□□□□ -1.49
PTCHD3Q3KNS1 AC005208.1-201ENST00000435112 599 ntTSL 3 BASIC5.72□□□□□ -1.49
PTCHD3Q3KNS1 AL359878.2-201ENST00000435531 407 ntTSL 3 BASIC5.72□□□□□ -1.49
PTCHD3Q3KNS1 RPL23AP19-201ENST00000436229 369 ntBASIC5.72□□□□□ -1.49
PTCHD3Q3KNS1 UBE2L5P-201ENST00000436446 465 ntAPPRIS P1 BASIC5.72□□□□□ -1.49
PTCHD3Q3KNS1 AL590399.4-201ENST00000436561 601 ntBASIC5.72□□□□□ -1.49
PTCHD3Q3KNS1 MTCYBP12-201ENST00000440559 1134 ntBASIC5.72□□□□□ -1.49
PTCHD3Q3KNS1 AL391987.1-201ENST00000441025 200 ntBASIC5.72□□□□□ -1.49
Retrieved 100 of 98,524 protein–RNA pairs in 83.7 ms