Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 PCBP1-AS1-237ENST00000452431 1194 ntTSL 4 BASIC6.34□□□□□ -1.39
RNF4P78317 RBBP6-204ENST00000452655 854 ntTSL 1 (best) BASIC6.34□□□□□ -1.39
RNF4P78317 NEGR1-IT1-201ENST00000453121 534 ntTSL 1 (best) BASIC6.34□□□□□ -1.39
RNF4P78317 AL358876.1-201ENST00000453364 1075 ntBASIC6.34□□□□□ -1.39
RNF4P78317 DNAJC19P1-201ENST00000455312 319 ntBASIC6.34□□□□□ -1.39
RNF4P78317 IGKV1OR22-5-201ENST00000458718 354 ntBASIC6.34□□□□□ -1.39
RNF4P78317 RPS4XP12-201ENST00000461747 709 ntBASIC6.34□□□□□ -1.39
RNF4P78317 RN7SL259P-201ENST00000478499 253 ntBASIC6.34□□□□□ -1.39
RNF4P78317 LINC02006-201ENST00000488210 524 ntTSL 4 BASIC6.34□□□□□ -1.39
RNF4P78317 RN7SL187P-201ENST00000495587 303 ntBASIC6.34□□□□□ -1.39
RNF4P78317 SETP14-201ENST00000497538 873 ntBASIC6.34□□□□□ -1.39
RNF4P78317 AC021220.1-201ENST00000507445 630 ntBASIC6.34□□□□□ -1.39
RNF4P78317 AC018709.1-201ENST00000509111 700 ntAPPRIS P1 TSL 3 BASIC6.34□□□□□ -1.39
RNF4P78317 SNX18P23-201ENST00000510867 677 ntBASIC6.34□□□□□ -1.39
RNF4P78317 AC093878.1-201ENST00000515630 432 ntBASIC6.34□□□□□ -1.39
RNF4P78317 AC048387.1-201ENST00000518428 494 ntTSL 3 BASIC6.34□□□□□ -1.39
RNF4P78317 ZNF436-AS1-205ENST00000518600 376 ntTSL 5 BASIC6.34□□□□□ -1.39
RNF4P78317 KLRF2-201ENST00000535540 731 ntAPPRIS P1 TSL 1 (best) BASIC6.34□□□□□ -1.39
RNF4P78317 AC022075.2-201ENST00000535911 562 ntTSL 4 BASIC6.34□□□□□ -1.39
RNF4P78317 LDHC-205ENST00000537486 583 ntTSL 5 BASIC6.34□□□□□ -1.39
RNF4P78317 SDHAF2-205ENST00000537782 559 ntTSL 4 BASIC6.34□□□□□ -1.39
RNF4P78317 CBX5-204ENST00000550411 894 ntAPPRIS P1 TSL 1 (best) BASIC6.34□□□□□ -1.39
RNF4P78317 OR11H12-201ENST00000550708 1085 ntAPPRIS P1 BASIC6.34□□□□□ -1.39
RNF4P78317 DNAL1-205ENST00000554339 548 ntTSL 5 BASIC6.34□□□□□ -1.39
RNF4P78317 AL133297.1-201ENST00000568149 404 ntTSL 2 BASIC6.34□□□□□ -1.39
RNF4P78317 IGLJCOR18-201ENST00000584002 424 ntBASIC6.34□□□□□ -1.39
RNF4P78317 AL078623.1-201ENST00000602702 907 ntBASIC6.34□□□□□ -1.39
RNF4P78317 AC133552.5-201ENST00000604266 540 ntBASIC6.34□□□□□ -1.39
RNF4P78317 LINC02112-203ENST00000606169 419 ntTSL 5 BASIC6.34□□□□□ -1.39
RNF4P78317 AC080013.4-201ENST00000607624 649 ntBASIC6.34□□□□□ -1.39
RNF4P78317 AC005962.2-201ENST00000611427 652 ntBASIC6.34□□□□□ -1.39
RNF4P78317 AC106782.7-201ENST00000624024 418 ntBASIC6.34□□□□□ -1.39
RNF4P78317 AC133555.5-201ENST00000624430 418 ntBASIC6.34□□□□□ -1.39
RNF4P78317 AC119674.1-212ENST00000641155 993 ntBASIC6.34□□□□□ -1.39
RNF4P78317 OR11H2-202ENST00000641517 1085 ntBASIC6.34□□□□□ -1.39
RNF4P78317 OR2AK2-202ENST00000641852 1008 ntAPPRIS P2 BASIC6.34□□□□□ -1.39
RNF4P78317 C2CD5-212ENST00000542676 3438 ntTSL 2 BASIC6.34□□□□□ -1.39
RNF4P78317 DOCK9-216ENST00000627024 4096 ntTSL 2 BASIC6.34□□□□□ -1.39
RNF4P78317 TPRG1-204ENST00000433971 2296 ntAPPRIS P1 TSL 2 BASIC6.34□□□□□ -1.39
RNF4P78317 ANGEL2-201ENST00000360506 4323 ntTSL 1 (best) BASIC6.34□□□□□ -1.39
RNF4P78317 PPP2R5C-205ENST00000445439 1526 ntTSL 1 (best) BASIC6.34□□□□□ -1.39
RNF4P78317 NAMPTP1-201ENST00000440465 2514 ntBASIC6.34□□□□□ -1.39
RNF4P78317 KCNIP4-201ENST00000359001 2168 ntTSL 1 (best) BASIC6.34□□□□□ -1.4
RNF4P78317 OR2G6-202ENST00000641501 5840 ntAPPRIS P1 BASIC6.34□□□□□ -1.4
RNF4P78317 PTK2-228ENST00000521059 4405 ntAPPRIS P1 TSL 1 (best) BASIC6.34□□□□□ -1.4
RNF4P78317 ENPP3-203ENST00000414305 3418 ntAPPRIS P1 TSL 1 (best) BASIC6.34□□□□□ -1.4
RNF4P78317 FTO-204ENST00000463855 3056 ntTSL 1 (best) BASIC6.34□□□□□ -1.4
RNF4P78317 AC008560.1-201ENST00000510585 1766 ntAPPRIS P5 TSL 2 BASIC6.34□□□□□ -1.4
RNF4P78317 PCNX4-201ENST00000317623 17339 ntAPPRIS P3 TSL 5 BASIC6.33□□□□□ -1.4
RNF4P78317 OFD1P10Y-201ENST00000434110 1433 ntBASIC6.33□□□□□ -1.4
RNF4P78317 GAPVD1-215ENST00000470056 8923 ntTSL 5 BASIC6.33□□□□□ -1.4
RNF4P78317 KCNQ3-205ENST00000621976 10659 ntAPPRIS ALT2 TSL 5 BASIC6.33□□□□□ -1.4
RNF4P78317 GRPR-201ENST00000380289 1929 ntAPPRIS P1 TSL 1 (best) BASIC6.33□□□□□ -1.4
RNF4P78317 LINC02197-201ENST00000502659 2767 ntTSL 2 BASIC6.33□□□□□ -1.4
RNF4P78317 FKBP5-202ENST00000536438 3940 ntAPPRIS P1 TSL 1 (best) BASIC6.33□□□□□ -1.4
RNF4P78317 IL1RAPL2-201ENST00000344799 1290 ntTSL 5 BASIC6.33□□□□□ -1.4
RNF4P78317 Y_RNA.88-201ENST00000363029 99 ntBASIC6.33□□□□□ -1.4
RNF4P78317 AL591503.1-201ENST00000366224 477 ntTSL 5 BASIC6.33□□□□□ -1.4
RNF4P78317 ANP32E-202ENST00000369115 708 ntTSL 3 BASIC6.33□□□□□ -1.4
RNF4P78317 USMG5-203ENST00000369811 635 ntAPPRIS P1 TSL 2 BASIC6.33□□□□□ -1.4
RNF4P78317 RNU6-98P-201ENST00000384173 107 ntBASIC6.33□□□□□ -1.4
RNF4P78317 RPL34-203ENST00000394668 853 ntAPPRIS P1 TSL 1 (best) BASIC6.33□□□□□ -1.4
RNF4P78317 CLEC7A-206ENST00000396484 1000 ntTSL 1 (best) BASIC6.33□□□□□ -1.4
RNF4P78317 RN7SKP271-201ENST00000410528 320 ntBASIC6.33□□□□□ -1.4
RNF4P78317 RNU2-42P-201ENST00000410697 113 ntBASIC6.33□□□□□ -1.4
RNF4P78317 LINC01934-201ENST00000414750 391 ntTSL 3 BASIC6.33□□□□□ -1.4
RNF4P78317 LINC01794-201ENST00000420187 549 ntTSL 4 BASIC6.33□□□□□ -1.4
RNF4P78317 GAPDHP57-201ENST00000424400 585 ntBASIC6.33□□□□□ -1.4
RNF4P78317 AHCYP8-201ENST00000425108 209 ntBASIC6.33□□□□□ -1.4
RNF4P78317 AC114808.2-201ENST00000428335 536 ntTSL 4 BASIC6.33□□□□□ -1.4
RNF4P78317 CCNB1IP1P1-201ENST00000428976 839 ntBASIC6.33□□□□□ -1.4
RNF4P78317 AC005532.1-201ENST00000430266 471 ntTSL 5 BASIC6.33□□□□□ -1.4
RNF4P78317 AL050321.1-201ENST00000432363 400 ntBASIC6.33□□□□□ -1.4
RNF4P78317 AL590399.4-201ENST00000436561 601 ntBASIC6.33□□□□□ -1.4
RNF4P78317 LARP1BP3-201ENST00000437229 869 ntBASIC6.33□□□□□ -1.4
RNF4P78317 AL450003.1-201ENST00000439447 455 ntTSL 2 BASIC6.33□□□□□ -1.4
RNF4P78317 AC106874.1-201ENST00000440495 646 ntTSL 3 BASIC6.33□□□□□ -1.4
RNF4P78317 AC096558.1-202ENST00000442794 561 ntTSL 4 BASIC6.33□□□□□ -1.4
RNF4P78317 COX6CP12-201ENST00000446748 202 ntBASIC6.33□□□□□ -1.4
RNF4P78317 AL671855.1-201ENST00000446875 1203 ntBASIC6.33□□□□□ -1.4
RNF4P78317 SSXP1-201ENST00000453640 473 ntBASIC6.33□□□□□ -1.4
RNF4P78317 RN7SL790P-201ENST00000474043 298 ntBASIC6.33□□□□□ -1.4
RNF4P78317 PLGLA-202ENST00000482249 475 ntTSL 3 BASIC6.33□□□□□ -1.4
RNF4P78317 VPS26AP1-201ENST00000483197 979 ntBASIC6.33□□□□□ -1.4
RNF4P78317 AC104687.1-201ENST00000485829 412 ntBASIC6.33□□□□□ -1.4
RNF4P78317 RAB7A-208ENST00000493186 329 ntTSL 5 BASIC6.33□□□□□ -1.4
RNF4P78317 SCOC-206ENST00000506322 687 ntAPPRIS ALT1 TSL 5 BASIC6.33□□□□□ -1.4
RNF4P78317 AC117460.1-201ENST00000508964 467 ntTSL 3 BASIC6.33□□□□□ -1.4
RNF4P78317 AC097480.1-201ENST00000509416 712 ntTSL 3 BASIC6.33□□□□□ -1.4
RNF4P78317 NPM1P21-201ENST00000513394 762 ntBASIC6.33□□□□□ -1.4
RNF4P78317 AC087752.2-201ENST00000521219 281 ntBASIC6.33□□□□□ -1.4
RNF4P78317 AC131935.1-201ENST00000524621 333 ntBASIC6.33□□□□□ -1.4
RNF4P78317 AC109635.6-201ENST00000525487 1113 ntBASIC6.33□□□□□ -1.4
RNF4P78317 AP002815.1-201ENST00000533740 386 ntTSL 3 BASIC6.33□□□□□ -1.4
RNF4P78317 AKAP7-208ENST00000537868 1006 ntTSL 5 BASIC6.33□□□□□ -1.4
RNF4P78317 OR7K1P-201ENST00000546439 926 ntBASIC6.33□□□□□ -1.4
RNF4P78317 GTF2IP22-201ENST00000554443 182 ntBASIC6.33□□□□□ -1.4
RNF4P78317 AC009269.3-201ENST00000558429 472 ntTSL 5 BASIC6.33□□□□□ -1.4
RNF4P78317 AC009142.1-202ENST00000562565 563 ntTSL 2 BASIC6.33□□□□□ -1.4
RNF4P78317 AC044840.1-201ENST00000577641 472 ntTSL 3 BASIC6.33□□□□□ -1.4
Retrieved 100 of 98,524 protein–RNA pairs in 163 ms