Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 ACADSB-201ENST00000358776 5859 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.62
FOXA1P55317 AC063923.1-201ENST00000478982 1619 ntBASIC4.9□□□□□ -1.62
FOXA1P55317 AC087667.1-201ENST00000500180 1422 ntTSL 1 (best) BASIC4.9□□□□□ -1.62
FOXA1P55317 PI15-202ENST00000523773 1413 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.62
FOXA1P55317 ALB-219ENST00000621085 1418 ntTSL 5 BASIC4.9□□□□□ -1.62
FOXA1P55317 TMEM68-202ENST00000434581 2549 ntAPPRIS P1 TSL 5 BASIC4.9□□□□□ -1.62
FOXA1P55317 ZNF678-201ENST00000343776 8556 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.62
FOXA1P55317 AC090220.1-201ENST00000593078 1699 ntBASIC4.9□□□□□ -1.62
FOXA1P55317 HERC1-201ENST00000443617 15137 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.62
FOXA1P55317 MIR99AHG-219ENST00000619222 3476 ntTSL 2 BASIC4.9□□□□□ -1.62
FOXA1P55317 STON1-201ENST00000404752 5511 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.62
FOXA1P55317 RAD17-220ENST00000616683 3057 ntTSL 1 (best) BASIC4.9□□□□□ -1.62
FOXA1P55317 CACNB4-243ENST00000637217 8188 ntTSL 5 BASIC4.9□□□□□ -1.62
FOXA1P55317 RNA5SP242-201ENST00000364171 118 ntBASIC4.9□□□□□ -1.63
FOXA1P55317 OR2W1-201ENST00000377175 1028 ntAPPRIS P1 BASIC4.9□□□□□ -1.63
FOXA1P55317 METTL5-204ENST00000409340 472 ntTSL 5 BASIC4.9□□□□□ -1.63
FOXA1P55317 AL451107.1-201ENST00000416310 408 ntTSL 2 BASIC4.9□□□□□ -1.63
FOXA1P55317 OR2AH1P-201ENST00000425717 928 ntBASIC4.9□□□□□ -1.63
FOXA1P55317 STXBP5-AS1-204ENST00000431143 644 ntTSL 3 BASIC4.9□□□□□ -1.63
FOXA1P55317 LINC01506-201ENST00000432148 495 ntTSL 2 BASIC4.9□□□□□ -1.63
FOXA1P55317 LINC00969-211ENST00000438608 525 ntTSL 5 BASIC4.9□□□□□ -1.63
FOXA1P55317 AL450023.3-201ENST00000440592 271 ntBASIC4.9□□□□□ -1.63
FOXA1P55317 AL691482.1-201ENST00000453255 87 ntBASIC4.9□□□□□ -1.63
FOXA1P55317 AL359265.3-201ENST00000456125 579 ntTSL 5 BASIC4.9□□□□□ -1.63
FOXA1P55317 RN7SL443P-201ENST00000464331 290 ntBASIC4.9□□□□□ -1.63
FOXA1P55317 RN7SL441P-201ENST00000492388 296 ntBASIC4.9□□□□□ -1.63
FOXA1P55317 AC073073.1-201ENST00000493920 463 ntBASIC4.9□□□□□ -1.63
FOXA1P55317 AC040914.1-201ENST00000518674 318 ntTSL 3 BASIC4.9□□□□□ -1.63
FOXA1P55317 AC087664.1-201ENST00000521456 358 ntTSL 3 BASIC4.9□□□□□ -1.63
FOXA1P55317 RPL23AP53-201ENST00000521854 457 ntBASIC4.9□□□□□ -1.63
FOXA1P55317 AC079089.1-204ENST00000530194 572 ntTSL 2 BASIC4.9□□□□□ -1.63
FOXA1P55317 AC116553.2-201ENST00000564203 463 ntBASIC4.9□□□□□ -1.63
FOXA1P55317 AC022031.2-203ENST00000587346 565 ntTSL 4 BASIC4.9□□□□□ -1.63
FOXA1P55317 PIK3C3-207ENST00000587402 452 ntTSL 3 BASIC4.9□□□□□ -1.63
FOXA1P55317 AC244131.2-201ENST00000612592 512 ntTSL 3 BASIC4.9□□□□□ -1.63
FOXA1P55317 AL591926.2-202ENST00000615199 719 ntTSL 5 BASIC4.9□□□□□ -1.63
FOXA1P55317 LINC01708-202ENST00000634316 859 ntTSL 5 BASIC4.9□□□□□ -1.63
FOXA1P55317 MAMDC2-AS1-201ENST00000377178 1504 ntTSL 1 (best) BASIC4.9□□□□□ -1.63
FOXA1P55317 OR4E1-202ENST00000641792 3742 ntAPPRIS P5 BASIC4.9□□□□□ -1.63
FOXA1P55317 UQCRC2P1-201ENST00000417777 1332 ntBASIC4.9□□□□□ -1.63
FOXA1P55317 SMC2-203ENST00000374793 5909 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.63
FOXA1P55317 SPATA1-206ENST00000490879 2888 ntAPPRIS P1 TSL 5 BASIC4.9□□□□□ -1.63
FOXA1P55317 AC011493.1-201ENST00000596753 1632 ntBASIC4.9□□□□□ -1.63
FOXA1P55317 DTNA-227ENST00000597599 1869 ntAPPRIS ALT2 TSL 2 BASIC4.9□□□□□ -1.63
FOXA1P55317 CDC5L-201ENST00000371477 6423 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.63
FOXA1P55317 GABRA2-211ENST00000514090 3401 ntAPPRIS P1 TSL 5 BASIC4.9□□□□□ -1.63
FOXA1P55317 GABRG2-224ENST00000640574 3150 ntTSL 5 BASIC4.9□□□□□ -1.63
FOXA1P55317 UBR5-204ENST00000518205 1931 ntTSL 5 BASIC4.89□□□□□ -1.63
FOXA1P55317 AP000808.1-201ENST00000512200 3252 ntTSL 2 BASIC4.89□□□□□ -1.63
FOXA1P55317 PHTF2-207ENST00000424760 1977 ntTSL 2 BASIC4.89□□□□□ -1.63
FOXA1P55317 MAK-203ENST00000474039 3859 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
FOXA1P55317 ZNF440-201ENST00000304060 4189 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
FOXA1P55317 ADGRL2-206ENST00000370721 5023 ntTSL 5 BASIC4.89□□□□□ -1.63
FOXA1P55317 AC068446.1-201ENST00000556425 1549 ntBASIC4.89□□□□□ -1.63
FOXA1P55317 LINC02302-201ENST00000556405 2904 ntTSL 2 BASIC4.89□□□□□ -1.63
FOXA1P55317 RNMT-202ENST00000383314 6250 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
FOXA1P55317 OR5H1-201ENST00000354565 942 ntAPPRIS P1 BASIC4.89□□□□□ -1.63
FOXA1P55317 RNA5SP132-201ENST00000364725 118 ntBASIC4.89□□□□□ -1.63
FOXA1P55317 BCL11A-205ENST00000409351 756 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
FOXA1P55317 AC025946.1-201ENST00000413286 430 ntTSL 3 BASIC4.89□□□□□ -1.63
FOXA1P55317 ERI3-IT1-201ENST00000414156 619 ntTSL 3 BASIC4.89□□□□□ -1.63
FOXA1P55317 AL513325.1-201ENST00000417716 1034 ntBASIC4.89□□□□□ -1.63
FOXA1P55317 AC108075.1-201ENST00000424692 529 ntBASIC4.89□□□□□ -1.63
FOXA1P55317 AL136455.1-201ENST00000441083 1240 ntBASIC4.89□□□□□ -1.63
FOXA1P55317 TBX18-AS1-202ENST00000441863 382 ntTSL 2 BASIC4.89□□□□□ -1.63
FOXA1P55317 TTTY22-201ENST00000445253 427 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
FOXA1P55317 AC093166.2-201ENST00000455969 1017 ntBASIC4.89□□□□□ -1.63
FOXA1P55317 RPS17P2-201ENST00000461663 408 ntBASIC4.89□□□□□ -1.63
FOXA1P55317 AC009127.1-201ENST00000467090 155 ntBASIC4.89□□□□□ -1.63
FOXA1P55317 RABGAP1L-214ENST00000478442 648 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
FOXA1P55317 RPS4XP1-201ENST00000482189 787 ntBASIC4.89□□□□□ -1.63
FOXA1P55317 OR4A46P-201ENST00000527255 933 ntBASIC4.89□□□□□ -1.63
FOXA1P55317 LINC01489-201ENST00000542689 605 ntTSL 5 BASIC4.89□□□□□ -1.63
FOXA1P55317 SLC7A7-210ENST00000554517 1158 ntTSL 5 BASIC4.89□□□□□ -1.63
FOXA1P55317 AC066612.1-202ENST00000561094 518 ntTSL 5 BASIC4.89□□□□□ -1.63
FOXA1P55317 AC009113.2-201ENST00000563182 403 ntTSL 3 BASIC4.89□□□□□ -1.63
FOXA1P55317 AC090457.1-201ENST00000579775 211 ntTSL 3 BASIC4.89□□□□□ -1.63
FOXA1P55317 MIR7515HG-254ENST00000593269 943 ntTSL 5 BASIC4.89□□□□□ -1.63
FOXA1P55317 OR8S1-202ENST00000641651 939 ntAPPRIS P1 BASIC4.89□□□□□ -1.63
FOXA1P55317 LINC02476-201ENST00000426413 1577 ntTSL 2 BASIC4.89□□□□□ -1.63
FOXA1P55317 OR6C3-202ENST00000641364 1341 ntAPPRIS P1 BASIC4.89□□□□□ -1.63
FOXA1P55317 UNC80-203ENST00000439458 13562 ntAPPRIS P1 TSL 5 BASIC4.89□□□□□ -1.63
FOXA1P55317 SUPT3H-203ENST00000371460 2389 ntAPPRIS P4 TSL 1 (best) BASIC4.89□□□□□ -1.63
FOXA1P55317 FANCI-201ENST00000300027 4713 ntAPPRIS P3 TSL 5 BASIC4.88□□□□□ -1.63
FOXA1P55317 SYCP1-201ENST00000369518 3452 ntAPPRIS P1 TSL 5 BASIC4.88□□□□□ -1.63
FOXA1P55317 C2CD6-202ENST00000439140 5512 ntAPPRIS ALT2 TSL 1 (best) BASIC4.88□□□□□ -1.63
FOXA1P55317 PANDAR-201ENST00000629595 1506 ntBASIC4.88□□□□□ -1.63
FOXA1P55317 RDH10-AS1-201ENST00000514599 3261 ntTSL 2 BASIC4.88□□□□□ -1.63
FOXA1P55317 POLE2-206ENST00000554396 1581 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
FOXA1P55317 ZNF33A-201ENST00000307441 6196 ntAPPRIS ALT2 TSL 4 BASIC4.88□□□□□ -1.63
FOXA1P55317 AP001157.1-201ENST00000550837 2339 ntBASIC4.88□□□□□ -1.63
FOXA1P55317 FAT3-201ENST00000409404 19030 ntAPPRIS P1 TSL 5 BASIC4.88□□□□□ -1.63
FOXA1P55317 OR2M5-201ENST00000366476 939 ntAPPRIS P1 BASIC4.88□□□□□ -1.63
FOXA1P55317 SNORA17A-201ENST00000391185 133 ntBASIC4.88□□□□□ -1.63
FOXA1P55317 AC092642.1-201ENST00000392417 425 ntBASIC4.88□□□□□ -1.63
FOXA1P55317 LRRC37BP1-201ENST00000398851 714 ntBASIC4.88□□□□□ -1.63
FOXA1P55317 SNORA77-201ENST00000408716 125 ntBASIC4.88□□□□□ -1.63
FOXA1P55317 RNA5SP178-201ENST00000410380 128 ntBASIC4.88□□□□□ -1.63
FOXA1P55317 RN7SKP59-201ENST00000410520 314 ntBASIC4.88□□□□□ -1.63
FOXA1P55317 FAM237A-201ENST00000441223 773 ntAPPRIS P1 TSL 2 BASIC4.88□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 100.8 ms