Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 AC090826.1-203ENST00000569235 490 ntBASIC4.76□□□□□ -1.65
HOXA1P49639 AL163952.1-202ENST00000569625 600 ntBASIC4.76□□□□□ -1.65
HOXA1P49639 BCAR4-204ENST00000573319 1273 ntTSL 5 BASIC4.76□□□□□ -1.65
HOXA1P49639 CXXC1P1-203ENST00000589302 746 ntTSL 3 BASIC4.76□□□□□ -1.65
HOXA1P49639 ZRANB2-AS2-212ENST00000590186 686 ntTSL 5 BASIC4.76□□□□□ -1.65
HOXA1P49639 AC006115.2-201ENST00000596823 202 ntBASIC4.76□□□□□ -1.65
HOXA1P49639 AF230666.2-201ENST00000602328 725 ntBASIC4.76□□□□□ -1.65
HOXA1P49639 AC073137.1-201ENST00000605636 634 ntBASIC4.76□□□□□ -1.65
HOXA1P49639 AC015849.2-201ENST00000605738 409 ntBASIC4.76□□□□□ -1.65
HOXA1P49639 LIPI-204ENST00000614229 1439 ntTSL 1 (best) BASIC4.76□□□□□ -1.65
HOXA1P49639 AL445670.1-201ENST00000618889 801 ntBASIC4.76□□□□□ -1.65
HOXA1P49639 OSER1-AS1-205ENST00000623343 827 ntTSL 5 BASIC4.76□□□□□ -1.65
HOXA1P49639 AP003476.1-201ENST00000623984 516 ntBASIC4.76□□□□□ -1.65
HOXA1P49639 COPS7B-225ENST00000631349 189 ntTSL 5 BASIC4.76□□□□□ -1.65
HOXA1P49639 UGP2-232ENST00000640075 567 ntTSL 5 BASIC4.76□□□□□ -1.65
HOXA1P49639 OR4N5-202ENST00000641086 2187 ntAPPRIS P1 BASIC4.76□□□□□ -1.65
HOXA1P49639 PCDH9-203ENST00000456367 5072 ntTSL 1 (best) BASIC4.76□□□□□ -1.65
HOXA1P49639 ZNF571-203ENST00000451802 2265 ntAPPRIS P1 TSL 1 (best) BASIC4.76□□□□□ -1.65
HOXA1P49639 ZNF160-203ENST00000429604 4336 ntAPPRIS P1 TSL 3 BASIC4.76□□□□□ -1.65
HOXA1P49639 PPP1R2P3-201ENST00000522232 1991 ntAPPRIS P1 BASIC4.76□□□□□ -1.65
HOXA1P49639 PCDH15-209ENST00000395433 6942 ntTSL 5 BASIC4.76□□□□□ -1.65
HOXA1P49639 CFH-206ENST00000630130 1658 ntTSL 1 (best) BASIC4.76□□□□□ -1.65
HOXA1P49639 AC011503.2-201ENST00000594230 1500 ntBASIC4.76□□□□□ -1.65
HOXA1P49639 MAPRE2-211ENST00000589699 4080 ntAPPRIS ALT1 TSL 2 BASIC4.76□□□□□ -1.65
HOXA1P49639 MTUS1-201ENST00000262102 6160 ntTSL 1 (best) BASIC4.76□□□□□ -1.65
HOXA1P49639 CHN1-201ENST00000295497 2047 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
HOXA1P49639 NEAT1-202ENST00000501122 22743 ntBASIC4.75□□□□□ -1.65
HOXA1P49639 ECT2L-201ENST00000367682 4343 ntAPPRIS P1 TSL 5 BASIC4.75□□□□□ -1.65
HOXA1P49639 ASB17-201ENST00000284142 1107 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
HOXA1P49639 SNORD65-201ENST00000391079 73 ntBASIC4.75□□□□□ -1.65
HOXA1P49639 IL6-203ENST00000401651 539 ntTSL 2 BASIC4.75□□□□□ -1.65
HOXA1P49639 AL138828.1-204ENST00000413745 898 ntTSL 5 BASIC4.75□□□□□ -1.65
HOXA1P49639 AL445183.3-201ENST00000414168 502 ntBASIC4.75□□□□□ -1.65
HOXA1P49639 BX664727.1-201ENST00000416024 466 ntBASIC4.75□□□□□ -1.65
HOXA1P49639 MS4A6A-202ENST00000420732 863 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
HOXA1P49639 AL357315.1-201ENST00000422930 254 ntTSL 5 BASIC4.75□□□□□ -1.65
HOXA1P49639 AC244453.3-201ENST00000426275 459 ntTSL 5 BASIC4.75□□□□□ -1.65
HOXA1P49639 MTATP6P17-201ENST00000431030 672 ntBASIC4.75□□□□□ -1.65
HOXA1P49639 AL389925.1-201ENST00000432257 728 ntBASIC4.75□□□□□ -1.65
HOXA1P49639 AC072062.1-204ENST00000437897 1132 ntTSL 5 BASIC4.75□□□□□ -1.65
HOXA1P49639 LINC02038-201ENST00000439074 702 ntTSL 4 BASIC4.75□□□□□ -1.65
HOXA1P49639 BX119904.2-201ENST00000446495 512 ntTSL 2 BASIC4.75□□□□□ -1.65
HOXA1P49639 PPIAP32-201ENST00000449940 472 ntBASIC4.75□□□□□ -1.65
HOXA1P49639 FRG2FP-204ENST00000453982 852 ntBASIC4.75□□□□□ -1.65
HOXA1P49639 RBMY2HP-201ENST00000457961 720 ntBASIC4.75□□□□□ -1.65
HOXA1P49639 CPHL1P-204ENST00000482639 584 ntTSL 5 BASIC4.75□□□□□ -1.65
HOXA1P49639 AL049874.2-201ENST00000492636 288 ntBASIC4.75□□□□□ -1.65
HOXA1P49639 OR5H3P-201ENST00000502817 919 ntBASIC4.75□□□□□ -1.65
HOXA1P49639 LINC00613-201ENST00000504365 467 ntTSL 3 BASIC4.75□□□□□ -1.65
HOXA1P49639 AC112518.2-201ENST00000508565 425 ntBASIC4.75□□□□□ -1.65
HOXA1P49639 AL035458.2-201ENST00000512005 478 ntTSL 3 BASIC4.75□□□□□ -1.65
HOXA1P49639 AC097515.1-201ENST00000512370 435 ntTSL 2 BASIC4.75□□□□□ -1.65
HOXA1P49639 AC078899.1-201ENST00000521432 1185 ntBASIC4.75□□□□□ -1.65
HOXA1P49639 AP006245.2-201ENST00000522004 300 ntBASIC4.75□□□□□ -1.65
HOXA1P49639 KCTD21-AS1-203ENST00000527321 586 ntTSL 3 BASIC4.75□□□□□ -1.65
HOXA1P49639 AP003066.2-201ENST00000529375 555 ntBASIC4.75□□□□□ -1.65
HOXA1P49639 AAGAB-203ENST00000542650 1015 ntTSL 2 BASIC4.75□□□□□ -1.65
HOXA1P49639 AC087286.2-201ENST00000558980 660 ntTSL 3 BASIC4.75□□□□□ -1.65
HOXA1P49639 NMNAT1P5-201ENST00000559657 841 ntBASIC4.75□□□□□ -1.65
HOXA1P49639 ARPP19-204ENST00000563277 955 ntTSL 2 BASIC4.75□□□□□ -1.65
HOXA1P49639 AC023825.1-201ENST00000566704 1030 ntBASIC4.75□□□□□ -1.65
HOXA1P49639 LINC01908-201ENST00000583148 555 ntTSL 4 BASIC4.75□□□□□ -1.65
HOXA1P49639 AP005136.2-201ENST00000583253 1049 ntBASIC4.75□□□□□ -1.65
HOXA1P49639 LINC00907-202ENST00000585639 915 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
HOXA1P49639 AC011473.2-201ENST00000596286 240 ntTSL 3 BASIC4.75□□□□□ -1.65
HOXA1P49639 BMS1P7-201ENST00000602440 1052 ntBASIC4.75□□□□□ -1.65
HOXA1P49639 C5orf63-208ENST00000607731 478 ntTSL 5 BASIC4.75□□□□□ -1.65
HOXA1P49639 AC112503.1-201ENST00000608436 391 ntBASIC4.75□□□□□ -1.65
HOXA1P49639 AP000864.1-201ENST00000609424 650 ntBASIC4.75□□□□□ -1.65
HOXA1P49639 AL034549.1-201ENST00000615120 578 ntTSL 2 BASIC4.75□□□□□ -1.65
HOXA1P49639 AL355974.3-201ENST00000617383 467 ntBASIC4.75□□□□□ -1.65
HOXA1P49639 AC109809.1-201ENST00000619665 545 ntBASIC4.75□□□□□ -1.65
HOXA1P49639 AC022106.2-201ENST00000620114 757 ntBASIC4.75□□□□□ -1.65
HOXA1P49639 AC089999.3-201ENST00000622440 577 ntBASIC4.75□□□□□ -1.65
HOXA1P49639 DARS-AS1-227ENST00000627442 633 ntTSL 5 BASIC4.75□□□□□ -1.65
HOXA1P49639 SOX9-AS1-218ENST00000628742 733 ntTSL 5 BASIC4.75□□□□□ -1.65
HOXA1P49639 AL161457.2-201ENST00000629181 630 ntTSL 5 BASIC4.75□□□□□ -1.65
HOXA1P49639 MEG8-222ENST00000637332 1237 ntTSL 5 BASIC4.75□□□□□ -1.65
HOXA1P49639 AC141930.3-201ENST00000640435 762 ntTSL 5 BASIC4.75□□□□□ -1.65
HOXA1P49639 CASC19-274ENST00000642018 970 ntBASIC4.75□□□□□ -1.65
HOXA1P49639 LINC00824-203ENST00000520206 2055 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
HOXA1P49639 ADGRF2-202ENST00000398742 4895 ntAPPRIS P1 TSL 5 BASIC4.75□□□□□ -1.65
HOXA1P49639 BMPR1B-202ENST00000394931 1922 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
HOXA1P49639 MTCO1P28-201ENST00000574177 1528 ntBASIC4.75□□□□□ -1.65
HOXA1P49639 GABRG2-202ENST00000361925 3767 ntTSL 3 BASIC4.75□□□□□ -1.65
HOXA1P49639 UEVLD-202ENST00000320750 1799 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
HOXA1P49639 RNF217-202ENST00000368414 1771 ntTSL 2 BASIC4.75□□□□□ -1.65
HOXA1P49639 VWC2L-202ENST00000427124 4480 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
HOXA1P49639 PAK3-213ENST00000620137 2130 ntTSL 5 BASIC4.75□□□□□ -1.65
HOXA1P49639 CNKSR2-202ENST00000379510 5315 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
HOXA1P49639 C15orf41-212ENST00000567389 2618 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
HOXA1P49639 ATP13A4-203ENST00000392443 4016 ntTSL 5 BASIC4.75□□□□□ -1.65
HOXA1P49639 AL627171.1-201ENST00000618845 1308 ntBASIC4.74□□□□□ -1.65
HOXA1P49639 URI1-201ENST00000360605 1579 ntAPPRIS ALT2 TSL 1 (best) BASIC4.74□□□□□ -1.65
HOXA1P49639 SENP8-202ENST00000542035 1672 ntAPPRIS P1 TSL 2 BASIC4.74□□□□□ -1.65
HOXA1P49639 NAMPTP1-201ENST00000440465 2514 ntBASIC4.74□□□□□ -1.65
HOXA1P49639 PDE4D-205ENST00000360047 3122 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
HOXA1P49639 AC018557.1-201ENST00000569274 1790 ntTSL 5 BASIC4.74□□□□□ -1.65
HOXA1P49639 AC018717.1-201ENST00000457712 1505 ntBASIC4.74□□□□□ -1.65
HOXA1P49639 CLEC2D-202ENST00000261340 935 ntAPPRIS ALT2 TSL 1 (best) BASIC4.74□□□□□ -1.65
Retrieved 100 of 98,524 protein–RNA pairs in 72.9 ms