Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 BGLT3-201ENST00000564523 994 ntBASIC5.28□□□□□ -1.56
HMGA1P17096 RN7SL290P-201ENST00000578661 300 ntBASIC5.28□□□□□ -1.56
HMGA1P17096 MIR4737-201ENST00000583979 81 ntBASIC5.28□□□□□ -1.56
HMGA1P17096 AC097467.3-209ENST00000595760 615 ntTSL 5 BASIC5.28□□□□□ -1.56
HMGA1P17096 LINC01338-201ENST00000627179 632 ntTSL 3 BASIC5.28□□□□□ -1.56
HMGA1P17096 C2orf83-206ENST00000642055 453 ntAPPRIS P3 BASIC5.28□□□□□ -1.56
HMGA1P17096 ADGRL2-209ENST00000370727 5164 ntTSL 5 BASIC5.28□□□□□ -1.56
HMGA1P17096 RFX3-212ENST00000617270 9253 ntAPPRIS P1 TSL 2 BASIC5.28□□□□□ -1.56
HMGA1P17096 SLC4A7-206ENST00000428386 7385 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
HMGA1P17096 AC008505.1-201ENST00000637582 2025 ntTSL 5 BASIC5.28□□□□□ -1.56
HMGA1P17096 BNIP3L-202ENST00000518611 1352 ntTSL 2 BASIC5.28□□□□□ -1.56
HMGA1P17096 PPFIBP1-201ENST00000228425 5933 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
HMGA1P17096 FCRL5-202ENST00000368189 4424 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
HMGA1P17096 CASC19-201ENST00000500112 5735 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
HMGA1P17096 COA1-201ENST00000223336 927 ntAPPRIS P3 TSL 2 BASIC5.27□□□□□ -1.57
HMGA1P17096 TXK-201ENST00000264316 2914 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
HMGA1P17096 MFAP1-201ENST00000267812 2155 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
HMGA1P17096 RN7SKP115-201ENST00000363177 317 ntBASIC5.27□□□□□ -1.57
HMGA1P17096 DEFB119-203ENST00000376321 457 ntAPPRIS P3 TSL 1 (best) BASIC5.27□□□□□ -1.57
HMGA1P17096 SNORA56-201ENST00000383966 129 ntBASIC5.27□□□□□ -1.57
HMGA1P17096 ATP5HP3-201ENST00000396994 486 ntBASIC5.27□□□□□ -1.57
HMGA1P17096 AL390316.1-201ENST00000406279 553 ntBASIC5.27□□□□□ -1.57
HMGA1P17096 AC096559.1-201ENST00000414086 399 ntTSL 2 BASIC5.27□□□□□ -1.57
HMGA1P17096 AF186996.5-201ENST00000418098 904 ntBASIC5.27□□□□□ -1.57
HMGA1P17096 LINC00502-201ENST00000423621 445 ntTSL 3 BASIC5.27□□□□□ -1.57
HMGA1P17096 AL354863.1-204ENST00000436430 556 ntTSL 3 BASIC5.27□□□□□ -1.57
HMGA1P17096 RPS29P9-201ENST00000440360 171 ntBASIC5.27□□□□□ -1.57
HMGA1P17096 GAPDHP14-201ENST00000450472 937 ntBASIC5.27□□□□□ -1.57
HMGA1P17096 OR52J1P-201ENST00000450596 932 ntBASIC5.27□□□□□ -1.57
HMGA1P17096 RPS29P22-201ENST00000472363 168 ntBASIC5.27□□□□□ -1.57
HMGA1P17096 GAPDHP56-201ENST00000506031 988 ntBASIC5.27□□□□□ -1.57
HMGA1P17096 LINC02265-201ENST00000510551 957 ntTSL 2 BASIC5.27□□□□□ -1.57
HMGA1P17096 RNU4ATAC18P-201ENST00000516179 126 ntBASIC5.27□□□□□ -1.57
HMGA1P17096 AC027369.5-201ENST00000533838 755 ntBASIC5.27□□□□□ -1.57
HMGA1P17096 AC091117.1-201ENST00000560967 426 ntTSL 5 BASIC5.27□□□□□ -1.57
HMGA1P17096 DARS-AS1-211ENST00000595061 720 ntTSL 5 BASIC5.27□□□□□ -1.57
HMGA1P17096 AC104785.1-201ENST00000603220 588 ntBASIC5.27□□□□□ -1.57
HMGA1P17096 MIR6820-201ENST00000611508 62 ntBASIC5.27□□□□□ -1.57
HMGA1P17096 AC108359.1-201ENST00000616451 1211 ntBASIC5.27□□□□□ -1.57
HMGA1P17096 Metazoa_SRP.181-201ENST00000616636 288 ntBASIC5.27□□□□□ -1.57
HMGA1P17096 ADGRL2-222ENST00000627151 5789 ntTSL 5 BASIC5.27□□□□□ -1.57
HMGA1P17096 AC109462.4-201ENST00000637882 581 ntTSL 5 BASIC5.27□□□□□ -1.57
HMGA1P17096 ZNF790-201ENST00000356725 3037 ntAPPRIS P1 TSL 2 BASIC5.27□□□□□ -1.57
HMGA1P17096 DAZ4-207ENST00000634662 1832 ntAPPRIS ALT2 TSL 5 BASIC5.27□□□□□ -1.57
HMGA1P17096 CLCA1-202ENST00000394711 3118 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
HMGA1P17096 NR3C2-202ENST00000344721 5712 ntAPPRIS P1 TSL 5 BASIC5.27□□□□□ -1.57
HMGA1P17096 AL583808.2-201ENST00000418078 1382 ntTSL 5 BASIC5.27□□□□□ -1.57
HMGA1P17096 ZNF230-201ENST00000429154 4115 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
HMGA1P17096 AC007750.1-202ENST00000418968 4098 ntTSL 5 BASIC5.27□□□□□ -1.57
HMGA1P17096 CASP10-202ENST00000286186 5928 ntAPPRIS P4 TSL 1 (best) BASIC5.27□□□□□ -1.57
HMGA1P17096 FP236241.1-201ENST00000623374 7632 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
HMGA1P17096 CU633967.1-211ENST00000624444 7628 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
HMGA1P17096 ASXL2-203ENST00000435504 12878 ntAPPRIS P5 TSL 5 BASIC5.27□□□□□ -1.57
HMGA1P17096 BX284613.1-201ENST00000452221 1641 ntBASIC5.26□□□□□ -1.57
HMGA1P17096 IGSF10-201ENST00000282466 11067 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
HMGA1P17096 POC1B-201ENST00000313546 3001 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
HMGA1P17096 GPR18-202ENST00000397470 1468 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
HMGA1P17096 RGSL1-201ENST00000294854 3696 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
HMGA1P17096 TBC1D23-201ENST00000344949 3656 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
HMGA1P17096 ALG10B-201ENST00000308742 10253 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
HMGA1P17096 R3HDM1-202ENST00000409478 4272 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
HMGA1P17096 GAS2L3-203ENST00000539410 2229 ntAPPRIS P1 TSL 2 BASIC5.26□□□□□ -1.57
HMGA1P17096 CYB5AP4-201ENST00000396692 399 ntBASIC5.26□□□□□ -1.57
HMGA1P17096 CXCL8-202ENST00000401931 700 ntAPPRIS ALT1 TSL 1 (best) BASIC5.26□□□□□ -1.57
HMGA1P17096 GPS2P1-201ENST00000411761 986 ntBASIC5.26□□□□□ -1.57
HMGA1P17096 AC079790.1-201ENST00000420365 507 ntTSL 3 BASIC5.26□□□□□ -1.57
HMGA1P17096 AC004415.1-201ENST00000422697 449 ntTSL 3 BASIC5.26□□□□□ -1.57
HMGA1P17096 AL136231.1-201ENST00000429407 730 ntBASIC5.26□□□□□ -1.57
HMGA1P17096 SPATA13-AS1-201ENST00000430733 433 ntTSL 3 BASIC5.26□□□□□ -1.57
HMGA1P17096 AC092159.1-201ENST00000433724 493 ntTSL 2 BASIC5.26□□□□□ -1.57
HMGA1P17096 FAM237A-201ENST00000441223 773 ntAPPRIS P1 TSL 2 BASIC5.26□□□□□ -1.57
HMGA1P17096 AC105271.1-201ENST00000442876 497 ntTSL 3 BASIC5.26□□□□□ -1.57
HMGA1P17096 AP000770.1-201ENST00000444123 583 ntTSL 5 BASIC5.26□□□□□ -1.57
HMGA1P17096 SDCBP-207ENST00000520168 1097 ntTSL 2 BASIC5.26□□□□□ -1.57
HMGA1P17096 AC012339.2-201ENST00000523996 453 ntBASIC5.26□□□□□ -1.57
HMGA1P17096 AP001521.2-201ENST00000608772 546 ntBASIC5.26□□□□□ -1.57
HMGA1P17096 AC087633.2-201ENST00000618611 725 ntTSL 3 BASIC5.26□□□□□ -1.57
HMGA1P17096 TXNDC8-201ENST00000374507 1787 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
HMGA1P17096 VCAM1-202ENST00000347652 2812 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
HMGA1P17096 CASC1-204ENST00000395990 2417 ntAPPRIS ALT2 TSL 1 (best) BASIC5.26□□□□□ -1.57
HMGA1P17096 F9-201ENST00000218099 2780 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
HMGA1P17096 SETDB2-201ENST00000258672 2138 ntTSL 5 BASIC5.26□□□□□ -1.57
HMGA1P17096 OFD1P9Y-201ENST00000417699 1491 ntBASIC5.26□□□□□ -1.57
HMGA1P17096 AC012618.3-205ENST00000637896 1496 ntBASIC5.26□□□□□ -1.57
HMGA1P17096 ZNF93-201ENST00000343769 2648 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
HMGA1P17096 STMN2-201ENST00000220876 2223 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
HMGA1P17096 HSPA8P14-201ENST00000552265 1805 ntBASIC5.25□□□□□ -1.57
HMGA1P17096 HMMR-204ENST00000432118 2084 ntAPPRIS ALT2 TSL 2 BASIC5.25□□□□□ -1.57
HMGA1P17096 XPNPEP3-201ENST00000357137 7988 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
HMGA1P17096 AC090826.1-202ENST00000562009 3337 ntTSL 1 (best) BASIC5.25□□□□□ -1.57
HMGA1P17096 NELL2-205ENST00000452445 3196 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
HMGA1P17096 OLFM3-201ENST00000338858 2189 ntAPPRIS ALT1 TSL 1 (best) BASIC5.25□□□□□ -1.57
HMGA1P17096 KCNQ3-205ENST00000621976 10659 ntAPPRIS ALT2 TSL 5 BASIC5.25□□□□□ -1.57
HMGA1P17096 ERI2-202ENST00000357967 3499 ntAPPRIS P1 TSL 5 BASIC5.25□□□□□ -1.57
HMGA1P17096 GAPDHP15-201ENST00000398586 975 ntBASIC5.25□□□□□ -1.57
HMGA1P17096 HMGB3P7-201ENST00000400214 611 ntBASIC5.25□□□□□ -1.57
HMGA1P17096 LINC00364-201ENST00000415120 611 ntTSL 3 BASIC5.25□□□□□ -1.57
HMGA1P17096 RPL12P43-201ENST00000420608 499 ntBASIC5.25□□□□□ -1.57
HMGA1P17096 AC093414.1-201ENST00000434712 514 ntBASIC5.25□□□□□ -1.57
HMGA1P17096 AC092941.2-201ENST00000444379 1008 ntTSL 3 BASIC5.25□□□□□ -1.57
Retrieved 100 of 98,524 protein–RNA pairs in 81.8 ms