Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 AL359715.2-201ENST00000452402 682 ntTSL 2 BASIC5.09□□□□□ -1.59
COL6A3P12111 AC005000.2-201ENST00000605468 310 ntBASIC5.09□□□□□ -1.59
COL6A3P12111 MIR8059-201ENST00000620427 81 ntBASIC5.09□□□□□ -1.59
COL6A3P12111 EPHA1-AS1-202ENST00000429289 5018 ntTSL 1 (best) BASIC5.09□□□□□ -1.59
COL6A3P12111 ETS1-202ENST00000392668 5139 ntTSL 1 (best) BASIC5.09□□□□□ -1.59
COL6A3P12111 CALU-203ENST00000479257 2572 ntTSL 1 (best) BASIC5.09□□□□□ -1.59
COL6A3P12111 OR2A7-202ENST00000641841 2062 ntAPPRIS P1 BASIC5.09□□□□□ -1.59
COL6A3P12111 RNU1-136P-201ENST00000384181 164 ntBASIC5.09□□□□□ -1.59
COL6A3P12111 RNU6ATAC-201ENST00000408749 126 ntBASIC5.09□□□□□ -1.59
COL6A3P12111 VN1R51P-201ENST00000411675 945 ntBASIC5.09□□□□□ -1.59
COL6A3P12111 AL356387.2-201ENST00000422272 243 ntBASIC5.09□□□□□ -1.59
COL6A3P12111 AL390879.2-203ENST00000426943 1121 ntBASIC5.09□□□□□ -1.59
COL6A3P12111 AC016598.2-201ENST00000514942 525 ntTSL 5 BASIC5.09□□□□□ -1.59
COL6A3P12111 OCLM-201ENST00000574641 884 ntAPPRIS P1 BASIC5.09□□□□□ -1.59
COL6A3P12111 AC053481.4-201ENST00000583164 216 ntBASIC5.09□□□□□ -1.59
COL6A3P12111 AC002429.2-202ENST00000637269 394 ntAPPRIS P1 TSL 3 BASIC5.09□□□□□ -1.59
COL6A3P12111 SRSF11-202ENST00000370950 3784 ntAPPRIS P3 TSL 1 (best) BASIC5.09□□□□□ -1.6
COL6A3P12111 ZNF639-201ENST00000326361 6064 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.6
COL6A3P12111 SALL4P2-201ENST00000423288 2910 ntBASIC5.09□□□□□ -1.6
COL6A3P12111 DAZ2-204ENST00000382431 3637 ntAPPRIS ALT2 TSL 1 (best) BASIC5.09□□□□□ -1.6
COL6A3P12111 ZNF484-204ENST00000395506 4031 ntTSL 3 BASIC5.09□□□□□ -1.6
COL6A3P12111 PTER-201ENST00000298942 3448 ntTSL 5 BASIC5.08□□□□□ -1.6
COL6A3P12111 PTPRO-210ENST00000544244 3978 ntAPPRIS ALT2 TSL 2 BASIC5.08□□□□□ -1.6
COL6A3P12111 OR8G1-201ENST00000341493 936 ntAPPRIS P1 BASIC5.08□□□□□ -1.6
COL6A3P12111 RNA5SP366-201ENST00000365454 123 ntBASIC5.08□□□□□ -1.6
COL6A3P12111 OR8G2P-201ENST00000412796 908 ntBASIC5.08□□□□□ -1.6
COL6A3P12111 RPL7P28-201ENST00000437739 740 ntBASIC5.08□□□□□ -1.6
COL6A3P12111 CYCSP43-201ENST00000438233 310 ntBASIC5.08□□□□□ -1.6
COL6A3P12111 SNORA70.24-201ENST00000517233 118 ntBASIC5.08□□□□□ -1.6
COL6A3P12111 AC115837.2-201ENST00000522127 677 ntTSL 3 BASIC5.08□□□□□ -1.6
COL6A3P12111 LINC02408-202ENST00000538573 559 ntTSL 4 BASIC5.08□□□□□ -1.6
COL6A3P12111 RN7SL802P-201ENST00000577858 299 ntBASIC5.08□□□□□ -1.6
COL6A3P12111 AC002091.1-201ENST00000578788 557 ntTSL 2 BASIC5.08□□□□□ -1.6
COL6A3P12111 AC022916.2-201ENST00000590144 559 ntTSL 4 BASIC5.08□□□□□ -1.6
COL6A3P12111 SRGNP1-201ENST00000603392 451 ntBASIC5.08□□□□□ -1.6
COL6A3P12111 FGF1-214ENST00000612258 3805 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
COL6A3P12111 GLYATL1-201ENST00000300079 2068 ntAPPRIS P3 TSL 2 BASIC5.08□□□□□ -1.6
COL6A3P12111 RRP8-201ENST00000254605 6560 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
COL6A3P12111 MYBPC1-221ENST00000551300 3934 ntAPPRIS ALT2 TSL 1 (best) BASIC5.08□□□□□ -1.6
COL6A3P12111 NAIP-201ENST00000194097 6088 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
COL6A3P12111 C12orf50-201ENST00000298699 1722 ntAPPRIS P1 TSL 2 BASIC5.08□□□□□ -1.6
COL6A3P12111 KRT222-202ENST00000394052 1712 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
COL6A3P12111 NAPEPLD-203ENST00000417955 4988 ntAPPRIS P1 TSL 5 BASIC5.08□□□□□ -1.6
COL6A3P12111 ZNF234-201ENST00000426739 4551 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
COL6A3P12111 INHBA-AS1-203ENST00000422822 2312 ntTSL 2 BASIC5.08□□□□□ -1.6
COL6A3P12111 MLLT10-202ENST00000377059 4850 ntAPPRIS ALT2 TSL 1 (best) BASIC5.08□□□□□ -1.6
COL6A3P12111 PLIN2-202ENST00000380464 655 ntTSL 2 BASIC5.08□□□□□ -1.6
COL6A3P12111 HYALP1-201ENST00000417674 1279 ntBASIC5.08□□□□□ -1.6
COL6A3P12111 AL390036.1-201ENST00000419428 734 ntTSL 5 BASIC5.08□□□□□ -1.6
COL6A3P12111 AC012506.4-201ENST00000421563 541 ntTSL 4 BASIC5.08□□□□□ -1.6
COL6A3P12111 RPL21P89-201ENST00000444021 467 ntBASIC5.08□□□□□ -1.6
COL6A3P12111 AL512303.1-201ENST00000458693 465 ntTSL 3 BASIC5.08□□□□□ -1.6
COL6A3P12111 RPL7P49-201ENST00000471402 708 ntBASIC5.08□□□□□ -1.6
COL6A3P12111 AC005832.1-201ENST00000544380 572 ntTSL 4 BASIC5.08□□□□□ -1.6
COL6A3P12111 MACC1-205ENST00000589011 2686 ntAPPRIS P1 TSL 5 BASIC5.08□□□□□ -1.6
COL6A3P12111 AC092821.2-201ENST00000545710 2042 ntBASIC5.08□□□□□ -1.6
COL6A3P12111 TOX-201ENST00000361421 4131 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
COL6A3P12111 CDY5P-201ENST00000411487 1580 ntBASIC5.08□□□□□ -1.6
COL6A3P12111 CDY9P-201ENST00000451397 1580 ntBASIC5.08□□□□□ -1.6
COL6A3P12111 IGSF6-201ENST00000268389 2785 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
COL6A3P12111 CNOT1-216ENST00000569240 7660 ntAPPRIS ALT1 TSL 1 (best) BASIC5.08□□□□□ -1.6
COL6A3P12111 RGPD6-201ENST00000329516 7165 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
COL6A3P12111 AL442639.1-201ENST00000625030 1899 ntBASIC5.08□□□□□ -1.6
COL6A3P12111 GAS2L3-203ENST00000539410 2229 ntAPPRIS P1 TSL 2 BASIC5.08□□□□□ -1.6
COL6A3P12111 ELP4-229ENST00000640961 8164 ntAPPRIS P2 TSL 1 (best) BASIC5.08□□□□□ -1.6
COL6A3P12111 ANAPC1-201ENST00000341068 8262 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
COL6A3P12111 AC016027.5-201ENST00000427227 210 ntBASIC5.08□□□□□ -1.6
COL6A3P12111 TXNDC12-AS1-201ENST00000428794 391 ntTSL 3 BASIC5.08□□□□□ -1.6
COL6A3P12111 BX323845.1-201ENST00000432417 179 ntBASIC5.08□□□□□ -1.6
COL6A3P12111 ARHGAP26-IT1-201ENST00000433186 388 ntTSL 3 BASIC5.08□□□□□ -1.6
COL6A3P12111 FTH1P21-201ENST00000512179 511 ntBASIC5.08□□□□□ -1.6
COL6A3P12111 ARL6IP1P3-201ENST00000524544 560 ntBASIC5.08□□□□□ -1.6
COL6A3P12111 MIMT1-201ENST00000597105 1050 ntBASIC5.08□□□□□ -1.6
COL6A3P12111 MIR8089-201ENST00000620165 82 ntBASIC5.08□□□□□ -1.6
COL6A3P12111 AC007342.8-201ENST00000623278 678 ntBASIC5.08□□□□□ -1.6
COL6A3P12111 S1PR3-202ENST00000375846 8505 ntAPPRIS P1 BASIC5.08□□□□□ -1.6
COL6A3P12111 PKD1L1-201ENST00000289672 9092 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
COL6A3P12111 MYBPC1-203ENST00000392934 3644 ntAPPRIS ALT2 TSL 2 BASIC5.07□□□□□ -1.6
COL6A3P12111 TACC1-207ENST00000519416 5510 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
COL6A3P12111 TACC1-210ENST00000520615 5509 ntTSL 2 BASIC5.07□□□□□ -1.6
COL6A3P12111 OR2A42-202ENST00000641810 4946 ntAPPRIS P1 BASIC5.07□□□□□ -1.6
COL6A3P12111 TLK1-212ENST00000521943 2605 ntTSL 2 BASIC5.07□□□□□ -1.6
COL6A3P12111 AP001002.1-201ENST00000625148 1513 ntBASIC5.07□□□□□ -1.6
COL6A3P12111 ENTPD1-AS1-202ENST00000416301 4241 ntTSL 2 BASIC5.07□□□□□ -1.6
COL6A3P12111 AQP9-201ENST00000219919 3034 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
COL6A3P12111 DPYD-202ENST00000370192 4412 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
COL6A3P12111 AC092650.1-201ENST00000447571 1808 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
COL6A3P12111 AC079915.1-201ENST00000584382 2780 ntTSL 2 BASIC5.07□□□□□ -1.6
COL6A3P12111 AC064875.1-202ENST00000421112 561 ntTSL 4 BASIC5.07□□□□□ -1.6
COL6A3P12111 AL139275.2-201ENST00000444731 539 ntTSL 3 BASIC5.07□□□□□ -1.6
COL6A3P12111 TMSB4X-204ENST00000451311 628 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
COL6A3P12111 LINC01957-201ENST00000506392 751 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
COL6A3P12111 AC091860.2-201ENST00000509423 941 ntTSL 2 BASIC5.07□□□□□ -1.6
COL6A3P12111 AC103876.1-201ENST00000568634 418 ntTSL 3 BASIC5.07□□□□□ -1.6
COL6A3P12111 AC010478.1-201ENST00000601500 6762 ntBASIC5.07□□□□□ -1.6
COL6A3P12111 OR2J3-202ENST00000641151 3297 ntAPPRIS P1 BASIC5.07□□□□□ -1.6
COL6A3P12111 ABCB5-203ENST00000406935 1483 ntTSL 2 BASIC5.07□□□□□ -1.6
COL6A3P12111 LMO7-203ENST00000357063 8237 ntAPPRIS ALT2 TSL 5 BASIC5.07□□□□□ -1.6
COL6A3P12111 TTTY15-202ENST00000440408 5284 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
COL6A3P12111 FOXP2-226ENST00000635638 2598 ntAPPRIS ALT1 TSL 5 BASIC5.07□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 70 ms