Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 RN7SKP141-201ENST00000516167 338 ntBASIC6.11□□□□□ -1.43
TDP1Q9NUW8 AC022784.4-201ENST00000518589 422 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
TDP1Q9NUW8 MOCS2-208ENST00000527216 707 ntTSL 3 BASIC6.11□□□□□ -1.43
TDP1Q9NUW8 MTATP6P15-201ENST00000527233 835 ntBASIC6.11□□□□□ -1.43
TDP1Q9NUW8 UBTFL10-201ENST00000528532 562 ntBASIC6.11□□□□□ -1.43
TDP1Q9NUW8 LINC01895-201ENST00000558690 404 ntTSL 5 BASIC6.11□□□□□ -1.43
TDP1Q9NUW8 AC012170.3-201ENST00000560159 297 ntTSL 2 BASIC6.11□□□□□ -1.43
TDP1Q9NUW8 AC007494.1-201ENST00000562293 760 ntBASIC6.11□□□□□ -1.43
TDP1Q9NUW8 AC007431.2-201ENST00000577189 563 ntTSL 2 BASIC6.11□□□□□ -1.43
TDP1Q9NUW8 MIR4505-201ENST00000582238 73 ntBASIC6.11□□□□□ -1.43
TDP1Q9NUW8 TEX26-AS1-204ENST00000585582 853 ntTSL 5 BASIC6.11□□□□□ -1.43
TDP1Q9NUW8 Z98949.1-210ENST00000597548 766 ntTSL 5 BASIC6.11□□□□□ -1.43
TDP1Q9NUW8 AC008751.2-201ENST00000597885 980 ntBASIC6.11□□□□□ -1.43
TDP1Q9NUW8 LINC01930-201ENST00000602672 870 ntTSL 5 BASIC6.11□□□□□ -1.43
TDP1Q9NUW8 GAS5-AS1-201ENST00000602767 694 ntBASIC6.11□□□□□ -1.43
TDP1Q9NUW8 AC113368.1-201ENST00000603736 382 ntBASIC6.11□□□□□ -1.43
TDP1Q9NUW8 FO393422.1-201ENST00000603908 708 ntBASIC6.11□□□□□ -1.43
TDP1Q9NUW8 AL589674.2-201ENST00000604304 337 ntBASIC6.11□□□□□ -1.43
TDP1Q9NUW8 AC002487.1-201ENST00000604565 994 ntBASIC6.11□□□□□ -1.43
TDP1Q9NUW8 AL683813.2-201ENST00000605245 502 ntBASIC6.11□□□□□ -1.43
TDP1Q9NUW8 AL160400.1-201ENST00000606385 1030 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
TDP1Q9NUW8 ADAMTS9-AS1-210ENST00000625328 699 ntTSL 5 BASIC6.11□□□□□ -1.43
TDP1Q9NUW8 LINC00506-201ENST00000628435 525 ntTSL 4 BASIC6.11□□□□□ -1.43
TDP1Q9NUW8 AC125613.1-204ENST00000636224 1248 ntTSL 5 BASIC6.11□□□□□ -1.43
TDP1Q9NUW8 PIGX-210ENST00000639143 831 ntAPPRIS ALT2 TSL 2 BASIC6.11□□□□□ -1.43
TDP1Q9NUW8 AC087565.3-203ENST00000641018 837 ntBASIC6.11□□□□□ -1.43
TDP1Q9NUW8 OR2AT4-202ENST00000641504 8661 ntAPPRIS P1 BASIC6.11□□□□□ -1.43
TDP1Q9NUW8 CACNB4-245ENST00000637284 2423 ntTSL 5 BASIC6.11□□□□□ -1.43
TDP1Q9NUW8 NAV1-201ENST00000367295 11645 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
TDP1Q9NUW8 AMOT-206ENST00000524145 3330 ntAPPRIS ALT2 TSL 5 BASIC6.11□□□□□ -1.43
TDP1Q9NUW8 AC005261.2-201ENST00000593427 4258 ntBASIC6.11□□□□□ -1.43
TDP1Q9NUW8 UGGT1-201ENST00000259253 10650 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
TDP1Q9NUW8 YTHDC1-207ENST00000579690 2983 ntAPPRIS ALT2 TSL 5 BASIC6.11□□□□□ -1.43
TDP1Q9NUW8 ERI2-206ENST00000563117 2903 ntTSL 2 BASIC6.11□□□□□ -1.43
TDP1Q9NUW8 CACNB4-234ENST00000636785 3787 ntTSL 5 BASIC6.11□□□□□ -1.43
TDP1Q9NUW8 OR51E2-203ENST00000641638 2626 ntAPPRIS P1 BASIC6.11□□□□□ -1.43
TDP1Q9NUW8 CSNK1G3-210ENST00000521364 2580 ntAPPRIS ALT2 TSL 2 BASIC6.11□□□□□ -1.43
TDP1Q9NUW8 KANTR-203ENST00000604062 4251 ntAPPRIS P1 TSL 5 BASIC6.11□□□□□ -1.43
TDP1Q9NUW8 AP4S1-212ENST00000622409 4113 ntAPPRIS P1 TSL 3 BASIC6.1□□□□□ -1.43
TDP1Q9NUW8 ZSCAN26-201ENST00000316606 2362 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
TDP1Q9NUW8 LINC01606-203ENST00000519160 2292 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
TDP1Q9NUW8 MEPE-209ENST00000560249 2206 ntAPPRIS ALT2 TSL 1 (best) BASIC6.1□□□□□ -1.43
TDP1Q9NUW8 ALMS1-IT1-201ENST00000441587 2107 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
TDP1Q9NUW8 RPGRIP1-201ENST00000382933 2004 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
TDP1Q9NUW8 TBC1D5-201ENST00000253692 7854 ntAPPRIS P1 TSL 1 (best) BASIC6.1□□□□□ -1.43
TDP1Q9NUW8 TMPRSS15-201ENST00000284885 3947 ntAPPRIS P1 TSL 1 (best) BASIC6.1□□□□□ -1.43
TDP1Q9NUW8 RNA5SP211-201ENST00000365516 117 ntBASIC6.1□□□□□ -1.43
TDP1Q9NUW8 LEMD1-203ENST00000367152 741 ntTSL 2 BASIC6.1□□□□□ -1.43
TDP1Q9NUW8 AL672167.2-201ENST00000377164 879 ntBASIC6.1□□□□□ -1.43
TDP1Q9NUW8 TYRP1-201ENST00000381136 872 ntTSL 2 BASIC6.1□□□□□ -1.43
TDP1Q9NUW8 AC005323.2-201ENST00000399342 583 ntTSL 3 BASIC6.1□□□□□ -1.43
TDP1Q9NUW8 AL034403.1-201ENST00000399414 885 ntBASIC6.1□□□□□ -1.43
TDP1Q9NUW8 OR3A2-201ENST00000408891 1076 ntBASIC6.1□□□□□ -1.43
TDP1Q9NUW8 UBE2V1P11-201ENST00000411559 285 ntBASIC6.1□□□□□ -1.43
TDP1Q9NUW8 LIPT1P1-201ENST00000415870 1186 ntBASIC6.1□□□□□ -1.43
TDP1Q9NUW8 AL449283.1-202ENST00000418249 604 ntBASIC6.1□□□□□ -1.43
TDP1Q9NUW8 BBIP1-203ENST00000423273 492 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
TDP1Q9NUW8 AL662874.1-201ENST00000426065 230 ntBASIC6.1□□□□□ -1.43
TDP1Q9NUW8 DEFA9P-201ENST00000433042 285 ntBASIC6.1□□□□□ -1.43
TDP1Q9NUW8 TMEM196-204ENST00000433641 768 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
TDP1Q9NUW8 AL139002.1-201ENST00000435281 902 ntTSL 5 BASIC6.1□□□□□ -1.43
TDP1Q9NUW8 SNRPFP2-201ENST00000440710 251 ntBASIC6.1□□□□□ -1.43
TDP1Q9NUW8 BMS1P22-202ENST00000440946 1160 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
TDP1Q9NUW8 AC016903.1-201ENST00000444017 588 ntTSL 4 BASIC6.1□□□□□ -1.43
TDP1Q9NUW8 AC026320.1-202ENST00000444729 672 ntTSL 3 BASIC6.1□□□□□ -1.43
TDP1Q9NUW8 BBIP1-206ENST00000447005 727 ntAPPRIS P1 TSL 2 BASIC6.1□□□□□ -1.43
TDP1Q9NUW8 AC093166.4-201ENST00000457867 318 ntBASIC6.1□□□□□ -1.43
TDP1Q9NUW8 ACA64.4-201ENST00000459070 127 ntBASIC6.1□□□□□ -1.43
TDP1Q9NUW8 AC121764.2-201ENST00000469806 587 ntTSL 2 BASIC6.1□□□□□ -1.43
TDP1Q9NUW8 RPS12P31-201ENST00000491419 398 ntBASIC6.1□□□□□ -1.43
TDP1Q9NUW8 RPS27AP16-201ENST00000492222 470 ntBASIC6.1□□□□□ -1.43
TDP1Q9NUW8 RPS4XP14-201ENST00000493072 781 ntBASIC6.1□□□□□ -1.43
TDP1Q9NUW8 AC025459.1-201ENST00000504072 156 ntBASIC6.1□□□□□ -1.43
TDP1Q9NUW8 CRISP1-203ENST00000505118 1296 ntAPPRIS P1 TSL 1 (best) BASIC6.1□□□□□ -1.43
TDP1Q9NUW8 AC021106.1-201ENST00000509020 1058 ntBASIC6.1□□□□□ -1.43
TDP1Q9NUW8 AC093752.1-206ENST00000511823 336 ntBASIC6.1□□□□□ -1.43
TDP1Q9NUW8 CYP4F27P-201ENST00000514557 494 ntBASIC6.1□□□□□ -1.43
TDP1Q9NUW8 RNA5SP362-201ENST00000516048 118 ntBASIC6.1□□□□□ -1.43
TDP1Q9NUW8 AC013701.1-201ENST00000522657 465 ntBASIC6.1□□□□□ -1.43
TDP1Q9NUW8 IGBP1P1-201ENST00000554337 1009 ntBASIC6.1□□□□□ -1.43
TDP1Q9NUW8 TXNP4-201ENST00000575018 310 ntBASIC6.1□□□□□ -1.43
TDP1Q9NUW8 MIR4789-201ENST00000577469 82 ntBASIC6.1□□□□□ -1.43
TDP1Q9NUW8 MIR4260-201ENST00000583107 67 ntBASIC6.1□□□□□ -1.43
TDP1Q9NUW8 AC002398.1-201ENST00000589397 427 ntTSL 5 BASIC6.1□□□□□ -1.43
TDP1Q9NUW8 VN1R87P-201ENST00000596706 487 ntBASIC6.1□□□□□ -1.43
TDP1Q9NUW8 AC104695.2-201ENST00000605056 775 ntBASIC6.1□□□□□ -1.43
TDP1Q9NUW8 OR8H2-202ENST00000618136 1038 ntAPPRIS ALT1 BASIC6.1□□□□□ -1.43
TDP1Q9NUW8 AJ009632.2-209ENST00000634853 933 ntTSL 5 BASIC6.1□□□□□ -1.43
TDP1Q9NUW8 PSG5-210ENST00000599812 1884 ntAPPRIS P1 TSL 1 (best) BASIC6.1□□□□□ -1.43
TDP1Q9NUW8 CHD6-202ENST00000373222 2477 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
TDP1Q9NUW8 AL132640.2-201ENST00000559968 1698 ntBASIC6.1□□□□□ -1.43
TDP1Q9NUW8 FSHR-202ENST00000406846 2784 ntAPPRIS P4 TSL 1 (best) BASIC6.1□□□□□ -1.43
TDP1Q9NUW8 ACOD1-202ENST00000449753 2097 ntAPPRIS ALT2 TSL 3 BASIC6.1□□□□□ -1.43
TDP1Q9NUW8 PDE4D-202ENST00000317118 2599 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
TDP1Q9NUW8 KCNJ15-201ENST00000328656 8399 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.43
TDP1Q9NUW8 AC009779.8-201ENST00000641684 4384 ntBASIC6.09□□□□□ -1.43
TDP1Q9NUW8 ZFAND6-213ENST00000559835 1446 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.43
TDP1Q9NUW8 C11orf65-208ENST00000615746 2711 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.43
TDP1Q9NUW8 NOVA1-206ENST00000539517 3912 ntAPPRIS P4 TSL 1 (best) BASIC6.09□□□□□ -1.43
TDP1Q9NUW8 MTO1-202ENST00000370305 2174 ntTSL 1 (best) BASIC6.09□□□□□ -1.43
Retrieved 100 of 98,524 protein–RNA pairs in 84.9 ms