Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 RPL27A-211ENST00000532359 406 ntTSL 2 BASIC6.32□□□□□ -1.4
TRIM39Q9HCM9 LINC01493-203ENST00000534756 509 ntTSL 3 BASIC6.32□□□□□ -1.4
TRIM39Q9HCM9 AL357153.3-201ENST00000553982 611 ntTSL 3 BASIC6.32□□□□□ -1.4
TRIM39Q9HCM9 AL355075.3-201ENST00000554678 492 ntTSL 5 BASIC6.32□□□□□ -1.4
TRIM39Q9HCM9 RNASE11-208ENST00000555841 886 ntAPPRIS P2 TSL 1 (best) BASIC6.32□□□□□ -1.4
TRIM39Q9HCM9 AC009121.2-202ENST00000572706 505 ntTSL 3 BASIC6.32□□□□□ -1.4
TRIM39Q9HCM9 RN7SL475P-201ENST00000583379 298 ntBASIC6.32□□□□□ -1.4
TRIM39Q9HCM9 AC067852.5-201ENST00000589299 310 ntBASIC6.32□□□□□ -1.4
TRIM39Q9HCM9 AC146944.4-201ENST00000602697 718 ntBASIC6.32□□□□□ -1.4
TRIM39Q9HCM9 BNIP3P4-201ENST00000604946 565 ntBASIC6.32□□□□□ -1.4
TRIM39Q9HCM9 AC090525.3-201ENST00000605601 189 ntBASIC6.32□□□□□ -1.4
TRIM39Q9HCM9 AL021707.7-201ENST00000607991 416 ntBASIC6.32□□□□□ -1.4
TRIM39Q9HCM9 AP000238.1-201ENST00000608759 426 ntBASIC6.32□□□□□ -1.4
TRIM39Q9HCM9 AC015574.1-205ENST00000611285 524 ntTSL 5 BASIC6.32□□□□□ -1.4
TRIM39Q9HCM9 AC011939.3-201ENST00000613686 466 ntBASIC6.32□□□□□ -1.4
TRIM39Q9HCM9 uc_338.29-201ENST00000615099 168 ntBASIC6.32□□□□□ -1.4
TRIM39Q9HCM9 AC245452.5-201ENST00000620649 780 ntTSL 3 BASIC6.32□□□□□ -1.4
TRIM39Q9HCM9 AL157770.1-201ENST00000623049 439 ntBASIC6.32□□□□□ -1.4
TRIM39Q9HCM9 AP001962.1-201ENST00000624114 559 ntBASIC6.32□□□□□ -1.4
TRIM39Q9HCM9 LINC01435-220ENST00000630847 714 ntTSL 5 BASIC6.32□□□□□ -1.4
TRIM39Q9HCM9 LINC01002-237ENST00000634025 555 ntTSL 5 BASIC6.32□□□□□ -1.4
TRIM39Q9HCM9 OR8G5-202ENST00000641707 1156 ntAPPRIS P1 BASIC6.32□□□□□ -1.4
TRIM39Q9HCM9 FMN1-212ENST00000616417 13529 ntAPPRIS ALT2 TSL 5 BASIC6.32□□□□□ -1.4
TRIM39Q9HCM9 LRRN3-201ENST00000308478 3099 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
TRIM39Q9HCM9 SUCLG1-201ENST00000393868 1475 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
TRIM39Q9HCM9 PLEKHA1-205ENST00000433307 3704 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
TRIM39Q9HCM9 FSTL5-201ENST00000306100 4831 ntAPPRIS P3 TSL 1 (best) BASIC6.32□□□□□ -1.4
TRIM39Q9HCM9 POC1B-201ENST00000313546 3001 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
TRIM39Q9HCM9 ZNF92-201ENST00000328747 3210 ntAPPRIS P3 TSL 1 (best) BASIC6.32□□□□□ -1.4
TRIM39Q9HCM9 FAM13A-AS1-201ENST00000500765 3210 ntTSL 2 BASIC6.32□□□□□ -1.4
TRIM39Q9HCM9 SV2B-201ENST00000330276 11202 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
TRIM39Q9HCM9 CASC19-246ENST00000641625 1606 ntBASIC6.32□□□□□ -1.4
TRIM39Q9HCM9 AC105235.1-201ENST00000623208 1816 ntBASIC6.32□□□□□ -1.4
TRIM39Q9HCM9 OR7A10-202ENST00000641129 1847 ntAPPRIS P1 BASIC6.32□□□□□ -1.4
TRIM39Q9HCM9 LRRC7-202ENST00000310961 6507 ntAPPRIS ALT2 TSL 5 BASIC6.32□□□□□ -1.4
TRIM39Q9HCM9 Z98755.1-201ENST00000407015 1384 ntBASIC6.31□□□□□ -1.4
TRIM39Q9HCM9 SEPT7-205ENST00000432293 1362 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
TRIM39Q9HCM9 PPBPP2-201ENST00000513150 1362 ntBASIC6.31□□□□□ -1.4
TRIM39Q9HCM9 CC2D2B-202ENST00000410012 1792 ntAPPRIS ALT2 TSL 2 BASIC6.31□□□□□ -1.4
TRIM39Q9HCM9 ARHGAP42P1-201ENST00000507474 1976 ntBASIC6.31□□□□□ -1.4
TRIM39Q9HCM9 RARB-204ENST00000458646 2590 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
TRIM39Q9HCM9 RUNX1T1-234ENST00000521553 1346 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
TRIM39Q9HCM9 AC053481.2-202ENST00000582394 1500 ntBASIC6.31□□□□□ -1.4
TRIM39Q9HCM9 NEGR1-202ENST00000357731 12811 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
TRIM39Q9HCM9 CEP44-206ENST00000503780 4534 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
TRIM39Q9HCM9 ATP13A4-204ENST00000400270 1458 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
TRIM39Q9HCM9 AP002478.1-201ENST00000577848 1455 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
TRIM39Q9HCM9 DCC-202ENST00000412726 9525 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
TRIM39Q9HCM9 OR1L8-201ENST00000304865 1061 ntAPPRIS P1 BASIC6.31□□□□□ -1.4
TRIM39Q9HCM9 NOP10-201ENST00000328848 554 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
TRIM39Q9HCM9 RPL11P4-201ENST00000332269 436 ntBASIC6.31□□□□□ -1.4
TRIM39Q9HCM9 SNORA62.2-201ENST00000364672 152 ntBASIC6.31□□□□□ -1.4
TRIM39Q9HCM9 MTND4P22-201ENST00000413116 1169 ntBASIC6.31□□□□□ -1.4
TRIM39Q9HCM9 OSTCP4-201ENST00000424397 449 ntBASIC6.31□□□□□ -1.4
TRIM39Q9HCM9 LINC01745-201ENST00000430921 372 ntTSL 5 BASIC6.31□□□□□ -1.4
TRIM39Q9HCM9 CDY14P-201ENST00000431260 1014 ntBASIC6.31□□□□□ -1.4
TRIM39Q9HCM9 AC005345.1-201ENST00000431868 217 ntBASIC6.31□□□□□ -1.4
TRIM39Q9HCM9 AL161935.3-201ENST00000433770 347 ntTSL 2 BASIC6.31□□□□□ -1.4
TRIM39Q9HCM9 AC073143.1-201ENST00000436316 395 ntBASIC6.31□□□□□ -1.4
TRIM39Q9HCM9 CDY12P-201ENST00000440679 1015 ntBASIC6.31□□□□□ -1.4
TRIM39Q9HCM9 CDY13P-201ENST00000445813 1015 ntBASIC6.31□□□□□ -1.4
TRIM39Q9HCM9 TIMM8BP2-201ENST00000445940 251 ntBASIC6.31□□□□□ -1.4
TRIM39Q9HCM9 HRAT17-201ENST00000447785 547 ntTSL 4 BASIC6.31□□□□□ -1.4
TRIM39Q9HCM9 VN1R38P-201ENST00000450265 887 ntBASIC6.31□□□□□ -1.4
TRIM39Q9HCM9 CDY23P-201ENST00000451661 1014 ntBASIC6.31□□□□□ -1.4
TRIM39Q9HCM9 AC115989.1-202ENST00000452153 1150 ntTSL 2 BASIC6.31□□□□□ -1.4
TRIM39Q9HCM9 RN7SL552P-201ENST00000462094 276 ntBASIC6.31□□□□□ -1.4
TRIM39Q9HCM9 NPM1P27-201ENST00000502784 830 ntBASIC6.31□□□□□ -1.4
TRIM39Q9HCM9 AC106895.1-202ENST00000502956 777 ntTSL 3 BASIC6.31□□□□□ -1.4
TRIM39Q9HCM9 AC084024.2-201ENST00000503480 791 ntBASIC6.31□□□□□ -1.4
TRIM39Q9HCM9 MTND1P22-201ENST00000510572 951 ntBASIC6.31□□□□□ -1.4
TRIM39Q9HCM9 AC008957.1-202ENST00000512329 681 ntTSL 3 BASIC6.31□□□□□ -1.4
TRIM39Q9HCM9 AC110760.1-201ENST00000513770 590 ntTSL 3 BASIC6.31□□□□□ -1.4
TRIM39Q9HCM9 RN7SKP183-201ENST00000517169 324 ntBASIC6.31□□□□□ -1.4
TRIM39Q9HCM9 AC023632.1-201ENST00000518463 375 ntBASIC6.31□□□□□ -1.4
TRIM39Q9HCM9 AC073581.1-201ENST00000519036 575 ntBASIC6.31□□□□□ -1.4
TRIM39Q9HCM9 MTERF3-203ENST00000522822 1148 ntTSL 2 BASIC6.31□□□□□ -1.4
TRIM39Q9HCM9 AP003730.2-201ENST00000526385 546 ntTSL 3 BASIC6.31□□□□□ -1.4
TRIM39Q9HCM9 AC087783.1-201ENST00000527135 564 ntTSL 4 BASIC6.31□□□□□ -1.4
TRIM39Q9HCM9 AL035071.2-201ENST00000565572 459 ntTSL 3 BASIC6.31□□□□□ -1.4
TRIM39Q9HCM9 AC004917.1-204ENST00000592441 701 ntTSL 2 BASIC6.31□□□□□ -1.4
TRIM39Q9HCM9 AC007308.1-201ENST00000608856 373 ntTSL 3 BASIC6.31□□□□□ -1.4
TRIM39Q9HCM9 AL359091.2-201ENST00000609303 556 ntBASIC6.31□□□□□ -1.4
TRIM39Q9HCM9 AL450489.1-201ENST00000612071 468 ntBASIC6.31□□□□□ -1.4
TRIM39Q9HCM9 AC105227.2-201ENST00000615075 605 ntBASIC6.31□□□□□ -1.4
TRIM39Q9HCM9 AC090246.1-201ENST00000616499 426 ntBASIC6.31□□□□□ -1.4
TRIM39Q9HCM9 CLECL1-204ENST00000621400 611 ntAPPRIS ALT2 TSL 5 BASIC6.31□□□□□ -1.4
TRIM39Q9HCM9 AC244205.1-201ENST00000624935 705 ntTSL 2 BASIC6.31□□□□□ -1.4
TRIM39Q9HCM9 AC007671.2-201ENST00000637344 619 ntBASIC6.31□□□□□ -1.4
TRIM39Q9HCM9 MFSD8-245ENST00000641743 948 ntBASIC6.31□□□□□ -1.4
TRIM39Q9HCM9 OR2AK2-202ENST00000641852 1008 ntAPPRIS P2 BASIC6.31□□□□□ -1.4
TRIM39Q9HCM9 IARS-213ENST00000627121 4587 ntTSL 5 BASIC6.31□□□□□ -1.4
TRIM39Q9HCM9 PSD3-219ENST00000614430 6136 ntTSL 5 BASIC6.31□□□□□ -1.4
TRIM39Q9HCM9 TRAF5-201ENST00000261464 3972 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
TRIM39Q9HCM9 AC110373.1-201ENST00000505994 3505 ntBASIC6.31□□□□□ -1.4
TRIM39Q9HCM9 DMD-205ENST00000359836 7339 ntTSL 5 BASIC6.31□□□□□ -1.4
TRIM39Q9HCM9 LGALS8-204ENST00000352231 1402 ntAPPRIS P4 TSL 2 BASIC6.31□□□□□ -1.4
TRIM39Q9HCM9 FLG2-201ENST00000388718 9124 ntAPPRIS P1 TSL 5 BASIC6.31□□□□□ -1.4
TRIM39Q9HCM9 FASTKD2-203ENST00000403094 2344 ntAPPRIS P1 TSL 5 BASIC6.31□□□□□ -1.4
TRIM39Q9HCM9 AC007744.1-201ENST00000607540 2289 ntTSL 5 BASIC6.3□□□□□ -1.4
Retrieved 100 of 98,524 protein–RNA pairs in 83.7 ms