Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 AC087477.5-202ENST00000560242 389 ntTSL 3 BASIC5.5□□□□□ -1.53
VMP1Q96GC9 AC021351.1-202ENST00000561394 701 ntTSL 3 BASIC5.5□□□□□ -1.53
VMP1Q96GC9 AC099850.2-201ENST00000577660 557 ntAPPRIS P1 TSL 3 BASIC5.5□□□□□ -1.53
VMP1Q96GC9 AC011507.1-201ENST00000585364 567 ntTSL 4 BASIC5.5□□□□□ -1.53
VMP1Q96GC9 AC004160.1-210ENST00000599875 689 ntTSL 5 BASIC5.5□□□□□ -1.53
VMP1Q96GC9 AC008395.1-201ENST00000601752 607 ntTSL 5 BASIC5.5□□□□□ -1.53
VMP1Q96GC9 AC123786.2-201ENST00000603459 275 ntBASIC5.5□□□□□ -1.53
VMP1Q96GC9 AC100767.2-201ENST00000604840 693 ntBASIC5.5□□□□□ -1.53
VMP1Q96GC9 FAM27E4-201ENST00000605259 342 ntBASIC5.5□□□□□ -1.53
VMP1Q96GC9 AC145423.1-201ENST00000605712 336 ntBASIC5.5□□□□□ -1.53
VMP1Q96GC9 AC244131.2-201ENST00000612592 512 ntTSL 3 BASIC5.5□□□□□ -1.53
VMP1Q96GC9 AL589745.2-201ENST00000616366 555 ntTSL 4 BASIC5.5□□□□□ -1.53
VMP1Q96GC9 BNIP3P41-202ENST00000616656 861 ntBASIC5.5□□□□□ -1.53
VMP1Q96GC9 AL445670.1-201ENST00000618889 801 ntBASIC5.5□□□□□ -1.53
VMP1Q96GC9 SNORA11.6-201ENST00000619030 128 ntBASIC5.5□□□□□ -1.53
VMP1Q96GC9 SNX18P12-201ENST00000624821 759 ntBASIC5.5□□□□□ -1.53
VMP1Q96GC9 LINC01320-210ENST00000626008 929 ntTSL 5 BASIC5.5□□□□□ -1.53
VMP1Q96GC9 MYOCOS-202ENST00000636788 1039 ntAPPRIS ALT2 TSL 5 BASIC5.5□□□□□ -1.53
VMP1Q96GC9 UGP2-232ENST00000640075 567 ntTSL 5 BASIC5.5□□□□□ -1.53
VMP1Q96GC9 PDE5A-203ENST00000394439 6770 ntAPPRIS ALT2 TSL 5 BASIC5.5□□□□□ -1.53
VMP1Q96GC9 ZNF682-201ENST00000358523 2161 ntTSL 2 BASIC5.5□□□□□ -1.53
VMP1Q96GC9 NAT1-201ENST00000307719 1815 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
VMP1Q96GC9 ZNF160-203ENST00000429604 4336 ntAPPRIS P1 TSL 3 BASIC5.5□□□□□ -1.53
VMP1Q96GC9 DOCK10-202ENST00000409592 7288 ntAPPRIS ALT2 TSL 1 (best) BASIC5.5□□□□□ -1.53
VMP1Q96GC9 SYNJ2BP-201ENST00000256366 7015 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
VMP1Q96GC9 KLHL13-206ENST00000469946 2353 ntTSL 2 BASIC5.5□□□□□ -1.53
VMP1Q96GC9 AC092821.1-201ENST00000640129 4180 ntAPPRIS P1 TSL 5 BASIC5.5□□□□□ -1.53
VMP1Q96GC9 ANAPC1P1-201ENST00000426186 2145 ntBASIC5.5□□□□□ -1.53
VMP1Q96GC9 LINC01541-202ENST00000568095 3105 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
VMP1Q96GC9 XRN1-201ENST00000264951 10143 ntAPPRIS P3 TSL 1 (best) BASIC5.49□□□□□ -1.53
VMP1Q96GC9 PCGF5-201ENST00000336126 7018 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
VMP1Q96GC9 ALG2-202ENST00000319033 1627 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
VMP1Q96GC9 C15orf41-201ENST00000338183 2578 ntTSL 5 BASIC5.49□□□□□ -1.53
VMP1Q96GC9 C1orf141-208ENST00000621590 4179 ntAPPRIS ALT2 TSL 5 BASIC5.49□□□□□ -1.53
VMP1Q96GC9 ASNSP1-201ENST00000518311 1939 ntBASIC5.49□□□□□ -1.53
VMP1Q96GC9 OR52B3P-201ENST00000314715 928 ntBASIC5.49□□□□□ -1.53
VMP1Q96GC9 RN7SKP74-201ENST00000362849 309 ntBASIC5.49□□□□□ -1.53
VMP1Q96GC9 RNU6-666P-201ENST00000363499 107 ntBASIC5.49□□□□□ -1.53
VMP1Q96GC9 MIR320B1-201ENST00000390209 79 ntBASIC5.49□□□□□ -1.53
VMP1Q96GC9 TRBV23-1-201ENST00000390396 347 ntAPPRIS P1 BASIC5.49□□□□□ -1.53
VMP1Q96GC9 C6orf48-208ENST00000395788 815 ntAPPRIS P1 TSL 2 BASIC5.49□□□□□ -1.53
VMP1Q96GC9 CLEC7A-206ENST00000396484 1000 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
VMP1Q96GC9 CAPSL-201ENST00000397366 969 ntAPPRIS P1 TSL 3 BASIC5.49□□□□□ -1.53
VMP1Q96GC9 LYPLA1P3-201ENST00000402650 695 ntBASIC5.49□□□□□ -1.53
VMP1Q96GC9 LSM5-205ENST00000409952 687 ntTSL 4 BASIC5.49□□□□□ -1.53
VMP1Q96GC9 LSM5-206ENST00000409987 504 ntTSL 5 BASIC5.49□□□□□ -1.53
VMP1Q96GC9 AC211486.3-201ENST00000412694 621 ntBASIC5.49□□□□□ -1.53
VMP1Q96GC9 EEF1B2P8-201ENST00000414101 671 ntBASIC5.49□□□□□ -1.53
VMP1Q96GC9 LINC00867-202ENST00000415417 488 ntTSL 3 BASIC5.49□□□□□ -1.53
VMP1Q96GC9 AC017019.1-201ENST00000426129 261 ntBASIC5.49□□□□□ -1.53
VMP1Q96GC9 MTCO3P21-201ENST00000430791 643 ntBASIC5.49□□□□□ -1.53
VMP1Q96GC9 AC126120.1-201ENST00000431082 470 ntBASIC5.49□□□□□ -1.53
VMP1Q96GC9 NDUFA5P10-201ENST00000432147 357 ntBASIC5.49□□□□□ -1.53
VMP1Q96GC9 LINC00383-201ENST00000433664 817 ntTSL 3 BASIC5.49□□□□□ -1.53
VMP1Q96GC9 AL353597.2-202ENST00000434901 373 ntBASIC5.49□□□□□ -1.53
VMP1Q96GC9 AL139161.2-201ENST00000438371 740 ntTSL 3 BASIC5.49□□□□□ -1.53
VMP1Q96GC9 ELOCP10-201ENST00000440624 327 ntBASIC5.49□□□□□ -1.53
VMP1Q96GC9 HMGB3P9-201ENST00000441799 583 ntBASIC5.49□□□□□ -1.53
VMP1Q96GC9 AF130359.1-201ENST00000444868 438 ntTSL 3 BASIC5.49□□□□□ -1.53
VMP1Q96GC9 AC132807.1-201ENST00000449613 458 ntTSL 3 BASIC5.49□□□□□ -1.53
VMP1Q96GC9 AP006222.1-205ENST00000450734 457 ntBASIC5.49□□□□□ -1.53
VMP1Q96GC9 RPS6P2-201ENST00000454208 705 ntBASIC5.49□□□□□ -1.53
VMP1Q96GC9 AKR1C2-203ENST00000455190 1098 ntTSL 2 BASIC5.49□□□□□ -1.53
VMP1Q96GC9 SEPT7P9-201ENST00000475691 413 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
VMP1Q96GC9 PFN1P6-201ENST00000476786 399 ntBASIC5.49□□□□□ -1.53
VMP1Q96GC9 AC109349.1-201ENST00000503299 758 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
VMP1Q96GC9 AC113382.2-201ENST00000506911 646 ntTSL 3 BASIC5.49□□□□□ -1.53
VMP1Q96GC9 AC114284.1-201ENST00000511422 1114 ntTSL 2 BASIC5.49□□□□□ -1.53
VMP1Q96GC9 RN7SKP288-201ENST00000516227 268 ntBASIC5.49□□□□□ -1.53
VMP1Q96GC9 AC008705.1-201ENST00000518837 489 ntTSL 3 BASIC5.49□□□□□ -1.53
VMP1Q96GC9 AC079600.1-201ENST00000550326 297 ntBASIC5.49□□□□□ -1.53
VMP1Q96GC9 LINC01234-204ENST00000550905 589 ntTSL 3 BASIC5.49□□□□□ -1.53
VMP1Q96GC9 FLVCR2-207ENST00000555027 938 ntTSL 3 BASIC5.49□□□□□ -1.53
VMP1Q96GC9 AC127381.1-201ENST00000555979 939 ntBASIC5.49□□□□□ -1.53
VMP1Q96GC9 AC006530.1-201ENST00000555980 571 ntBASIC5.49□□□□□ -1.53
VMP1Q96GC9 AC245128.3-201ENST00000594721 748 ntBASIC5.49□□□□□ -1.53
VMP1Q96GC9 AC133552.5-201ENST00000604266 540 ntBASIC5.49□□□□□ -1.53
VMP1Q96GC9 ELOCP34-201ENST00000604436 327 ntBASIC5.49□□□□□ -1.53
VMP1Q96GC9 AC007786.3-201ENST00000615154 596 ntBASIC5.49□□□□□ -1.53
VMP1Q96GC9 OR5R1-201ENST00000623286 975 ntAPPRIS P1 BASIC5.49□□□□□ -1.53
VMP1Q96GC9 OSER1-AS1-205ENST00000623343 827 ntTSL 5 BASIC5.49□□□□□ -1.53
VMP1Q96GC9 AC002429.2-202ENST00000637269 394 ntAPPRIS P1 TSL 3 BASIC5.49□□□□□ -1.53
VMP1Q96GC9 OR8G3P-202ENST00000641572 1255 ntBASIC5.49□□□□□ -1.53
VMP1Q96GC9 ZFYVE16-206ENST00000510158 6680 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
VMP1Q96GC9 BCORP1-203ENST00000513194 5093 ntBASIC5.49□□□□□ -1.53
VMP1Q96GC9 SPATA5-201ENST00000274008 8137 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
VMP1Q96GC9 MTERF1-203ENST00000419292 3882 ntAPPRIS ALT2 TSL 1 (best) BASIC5.49□□□□□ -1.53
VMP1Q96GC9 KLHL28-201ENST00000355081 2177 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
VMP1Q96GC9 NAT1-203ENST00000517492 2280 ntAPPRIS P1 TSL 2 BASIC5.49□□□□□ -1.53
VMP1Q96GC9 USP8-201ENST00000307179 4243 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
VMP1Q96GC9 PNPLA4-203ENST00000444736 2752 ntAPPRIS P1 TSL 4 BASIC5.49□□□□□ -1.53
VMP1Q96GC9 PSG4-201ENST00000244295 1629 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
VMP1Q96GC9 KRT222-202ENST00000394052 1712 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
VMP1Q96GC9 DNAH12-203ENST00000389536 2613 ntTSL 5 BASIC5.48□□□□□ -1.53
VMP1Q96GC9 ZNF567-203ENST00000585696 3734 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
VMP1Q96GC9 PDE10A-203ENST00000539869 4401 ntAPPRIS ALT2 TSL 1 (best) BASIC5.48□□□□□ -1.53
VMP1Q96GC9 DSPP-201ENST00000282478 4281 ntAPPRIS P1 TSL 5 BASIC5.48□□□□□ -1.53
VMP1Q96GC9 FILIP1-202ENST00000370020 4051 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
VMP1Q96GC9 CCR2-201ENST00000292301 2671 ntTSL 5 BASIC5.48□□□□□ -1.53
VMP1Q96GC9 MIPOL1-204ENST00000539062 2389 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
Retrieved 100 of 98,524 protein–RNA pairs in 70.7 ms