Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 RIPOR2-208ENST00000613507 5539 ntAPPRIS P4 TSL 5 BASIC3.54□□□□□ -1.84
PRKDCP78527 STAP1-201ENST00000265404 1511 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
PRKDCP78527 HYKK-206ENST00000569878 4097 ntAPPRIS P1 TSL 5 BASIC3.54□□□□□ -1.84
PRKDCP78527 FANCM-202ENST00000542564 6167 ntTSL 1 (best) BASIC3.54□□□□□ -1.84
PRKDCP78527 NEK1-208ENST00000512193 4430 ntAPPRIS ALT2 TSL 1 (best) BASIC3.54□□□□□ -1.84
PRKDCP78527 ZNF229-203ENST00000613197 4835 ntAPPRIS ALT2 TSL 1 (best) BASIC3.54□□□□□ -1.84
PRKDCP78527 ADAMTS4-202ENST00000367996 9773 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
PRKDCP78527 MIAT-218ENST00000613780 10143 ntTSL 1 (best) BASIC3.54□□□□□ -1.84
PRKDCP78527 TMCC1-201ENST00000393238 5992 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
PRKDCP78527 LRRC39-202ENST00000370137 1396 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
PRKDCP78527 PAPPA2-202ENST00000367662 9691 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
PRKDCP78527 MYOM1-202ENST00000356443 5847 ntAPPRIS P4 TSL 1 (best) BASIC3.54□□□□□ -1.84
PRKDCP78527 RGS5-212ENST00000618415 5812 ntTSL 4 BASIC3.54□□□□□ -1.84
PRKDCP78527 GPBP1-203ENST00000424459 4683 ntAPPRIS ALT2 TSL 5 BASIC3.54□□□□□ -1.84
PRKDCP78527 MIR634-201ENST00000385208 97 ntBASIC3.54□□□□□ -1.84
PRKDCP78527 LINC01312-202ENST00000456347 813 ntTSL 1 (best) BASIC3.54□□□□□ -1.84
PRKDCP78527 FOPNL-208ENST00000575744 565 ntTSL 4 BASIC3.54□□□□□ -1.84
PRKDCP78527 MIR3944-201ENST00000581277 108 ntBASIC3.54□□□□□ -1.84
PRKDCP78527 ZNF43-209ENST00000598288 560 ntTSL 4 BASIC3.54□□□□□ -1.84
PRKDCP78527 AL133481.2-203ENST00000607558 139 ntBASIC3.54□□□□□ -1.84
PRKDCP78527 RASSF8-215ENST00000611440 852 ntTSL 5 BASIC3.54□□□□□ -1.84
PRKDCP78527 WDCP-202ENST00000406895 3700 ntAPPRIS ALT2 TSL 1 (best) BASIC3.54□□□□□ -1.84
PRKDCP78527 SLC10A7-203ENST00000432059 3747 ntTSL 1 (best) BASIC3.54□□□□□ -1.84
PRKDCP78527 AL442639.1-201ENST00000625030 1899 ntBASIC3.54□□□□□ -1.84
PRKDCP78527 PBRM1-208ENST00000410007 4905 ntTSL 1 (best) BASIC3.54□□□□□ -1.84
PRKDCP78527 FRMPD4-202ENST00000616992 7916 ntAPPRIS ALT2 TSL 5 BASIC3.54□□□□□ -1.84
PRKDCP78527 CSMD1-218ENST00000635120 11737 ntAPPRIS P2 TSL 5 BASIC3.53□□□□□ -1.84
PRKDCP78527 ZNF667-206ENST00000591790 5250 ntTSL 2 BASIC3.53□□□□□ -1.84
PRKDCP78527 ZFYVE9-204ENST00000371591 4874 ntAPPRIS P4 TSL 1 (best) BASIC3.53□□□□□ -1.84
PRKDCP78527 AC025031.4-201ENST00000621248 3271 ntBASIC3.53□□□□□ -1.84
PRKDCP78527 ADGRE1-202ENST00000312053 3128 ntAPPRIS P3 TSL 1 (best) BASIC3.53□□□□□ -1.84
PRKDCP78527 AC245060.6-201ENST00000624350 8420 ntBASIC3.53□□□□□ -1.84
PRKDCP78527 AL121594.3-201ENST00000557565 3857 ntAPPRIS P1 TSL 2 BASIC3.53□□□□□ -1.84
PRKDCP78527 LIMA1-215ENST00000552823 3254 ntAPPRIS ALT2 TSL 2 BASIC3.53□□□□□ -1.84
PRKDCP78527 RN7SKP177-201ENST00000410567 355 ntBASIC3.53□□□□□ -1.84
PRKDCP78527 AC114755.2-201ENST00000413520 361 ntBASIC3.53□□□□□ -1.84
PRKDCP78527 AL390036.1-201ENST00000419428 734 ntTSL 5 BASIC3.53□□□□□ -1.84
PRKDCP78527 EBLN1-201ENST00000422359 1208 ntAPPRIS P1 BASIC3.53□□□□□ -1.84
PRKDCP78527 CASP12-207ENST00000447913 819 ntTSL 1 (best) BASIC3.53□□□□□ -1.84
PRKDCP78527 PANCR-201ENST00000503456 493 ntTSL 5 BASIC3.53□□□□□ -1.84
PRKDCP78527 AL049875.1-202ENST00000556620 857 ntTSL 3 BASIC3.53□□□□□ -1.84
PRKDCP78527 RN7SL802P-201ENST00000577858 299 ntBASIC3.53□□□□□ -1.84
PRKDCP78527 AC090403.1-202ENST00000582108 833 ntTSL 3 BASIC3.53□□□□□ -1.84
PRKDCP78527 AC090506.2-201ENST00000624521 419 ntBASIC3.53□□□□□ -1.84
PRKDCP78527 PRICKLE2-204ENST00000564377 8032 ntAPPRIS P2 TSL 5 BASIC3.53□□□□□ -1.84
PRKDCP78527 THOC1-219ENST00000616322 2078 ntAPPRIS ALT1 TSL 5 BASIC3.53□□□□□ -1.84
PRKDCP78527 EPHA3-201ENST00000336596 5809 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.84
PRKDCP78527 ABCB5-203ENST00000406935 1483 ntTSL 2 BASIC3.53□□□□□ -1.84
PRKDCP78527 AC006288.1-201ENST00000565320 1463 ntTSL 3 BASIC3.53□□□□□ -1.84
PRKDCP78527 AC019080.1-201ENST00000397057 5202 ntTSL 1 (best) BASIC3.53□□□□□ -1.84
PRKDCP78527 RPS29-202ENST00000396020 7062 ntTSL 1 (best) BASIC3.53□□□□□ -1.84
PRKDCP78527 CEP44-206ENST00000503780 4534 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.84
PRKDCP78527 DOCK1-206ENST00000623213 5761 ntTSL 1 (best) BASIC3.53□□□□□ -1.84
PRKDCP78527 ITPK1-AS1-201ENST00000553639 4701 ntBASIC3.53□□□□□ -1.84
PRKDCP78527 TAX1BP1-202ENST00000396319 2892 ntAPPRIS P3 TSL 1 (best) BASIC3.53□□□□□ -1.84
PRKDCP78527 AC016582.3-202ENST00000443870 6580 ntTSL 1 (best) BASIC3.53□□□□□ -1.84
PRKDCP78527 GOLGB1-202ENST00000393667 11198 ntAPPRIS ALT2 TSL 1 (best) BASIC3.53□□□□□ -1.84
PRKDCP78527 ACACB-203ENST00000377854 6588 ntTSL 5 BASIC3.53□□□□□ -1.84
PRKDCP78527 TIPARP-207ENST00000542783 3681 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.84
PRKDCP78527 PTPRT-207ENST00000373201 12660 ntAPPRIS ALT2 TSL 5 BASIC3.53□□□□□ -1.84
PRKDCP78527 ELAVL4-202ENST00000371819 2467 ntAPPRIS ALT1 TSL 2 BASIC3.53□□□□□ -1.84
PRKDCP78527 MCM10-202ENST00000378714 4547 ntAPPRIS ALT2 TSL 1 (best) BASIC3.53□□□□□ -1.84
PRKDCP78527 AL162591.2-201ENST00000449634 317 ntBASIC3.53□□□□□ -1.84
PRKDCP78527 AC069120.1-201ENST00000521623 379 ntTSL 3 BASIC3.53□□□□□ -1.84
PRKDCP78527 H3F3BP2-201ENST00000583907 357 ntBASIC3.53□□□□□ -1.84
PRKDCP78527 LZTFL1-215ENST00000536047 4342 ntTSL 2 BASIC3.53□□□□□ -1.84
PRKDCP78527 BCOR-205ENST00000397354 6258 ntAPPRIS P3 TSL 1 (best) BASIC3.53□□□□□ -1.84
PRKDCP78527 FBXL20-201ENST00000264658 10388 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.84
PRKDCP78527 DDX3Y-201ENST00000336079 4445 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.84
PRKDCP78527 MRPL50-201ENST00000374865 3332 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.84
PRKDCP78527 CEACAM1-201ENST00000161559 3519 ntAPPRIS P3 TSL 1 (best) BASIC3.53□□□□□ -1.84
PRKDCP78527 OR52E5-201ENST00000610445 2244 ntAPPRIS P1 BASIC3.53□□□□□ -1.84
PRKDCP78527 LINC00032-203ENST00000640247 1374 ntTSL 5 BASIC3.53□□□□□ -1.84
PRKDCP78527 LMO7-207ENST00000465261 5580 ntTSL 1 (best) BASIC3.53□□□□□ -1.84
PRKDCP78527 TCF7L2-206ENST00000355995 4073 ntTSL 1 (best) BASIC3.53□□□□□ -1.84
PRKDCP78527 KIAA1841-205ENST00000453873 4294 ntAPPRIS P1 TSL 5 BASIC3.53□□□□□ -1.84
PRKDCP78527 JADE1-203ENST00000452328 5544 ntAPPRIS ALT2 TSL 2 BASIC3.53□□□□□ -1.84
PRKDCP78527 AC015799.1-201ENST00000622996 3122 ntBASIC3.53□□□□□ -1.84
PRKDCP78527 TEX14-201ENST00000240361 4911 ntAPPRIS ALT2 TSL 1 (best) BASIC3.53□□□□□ -1.84
PRKDCP78527 PTMAP5-201ENST00000393073 333 ntBASIC3.53□□□□□ -1.84
PRKDCP78527 AC092647.1-201ENST00000420654 287 ntBASIC3.53□□□□□ -1.84
PRKDCP78527 LINC00348-201ENST00000428761 948 ntTSL 3 BASIC3.53□□□□□ -1.84
PRKDCP78527 AC005828.1-201ENST00000431604 524 ntTSL 5 BASIC3.53□□□□□ -1.84
PRKDCP78527 AC073130.1-202ENST00000454897 587 ntTSL 2 BASIC3.53□□□□□ -1.84
PRKDCP78527 LINC02339-201ENST00000472649 752 ntTSL 1 (best) BASIC3.53□□□□□ -1.84
PRKDCP78527 AC068633.1-202ENST00000476460 458 ntTSL 2 BASIC3.53□□□□□ -1.84
PRKDCP78527 AC008056.2-201ENST00000553812 551 ntTSL 5 BASIC3.53□□□□□ -1.84
PRKDCP78527 CCDC25-212ENST00000640944 261 ntTSL 5 BASIC3.53□□□□□ -1.84
PRKDCP78527 MAPK10-270ENST00000641102 3538 ntBASIC3.53□□□□□ -1.84
PRKDCP78527 AC089984.1-201ENST00000552780 1431 ntTSL 3 BASIC3.53□□□□□ -1.84
PRKDCP78527 AC007114.2-201ENST00000576014 4281 ntBASIC3.53□□□□□ -1.84
PRKDCP78527 CSDE1-203ENST00000358528 4076 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.84
PRKDCP78527 B4GALNT2-202ENST00000393354 8657 ntAPPRIS ALT2 TSL 1 (best) BASIC3.53□□□□□ -1.85
PRKDCP78527 MID1-203ENST00000380780 6195 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.85
PRKDCP78527 WBP11P1-201ENST00000562560 1931 ntBASIC3.53□□□□□ -1.85
PRKDCP78527 PIEZO2-203ENST00000503781 8259 ntAPPRIS P2 TSL 1 (best) BASIC3.53□□□□□ -1.85
PRKDCP78527 AL603840.1-201ENST00000422374 4063 ntTSL 2 BASIC3.53□□□□□ -1.85
PRKDCP78527 ERCC6-201ENST00000355832 8008 ntAPPRIS P1 TSL 1 (best) BASIC3.52□□□□□ -1.85
PRKDCP78527 AL358975.1-203ENST00000413352 2932 ntTSL 3 BASIC3.52□□□□□ -1.85
PRKDCP78527 MYT1L-202ENST00000399161 7063 ntAPPRIS ALT2 TSL 1 (best) BASIC3.52□□□□□ -1.85
Retrieved 100 of 98,524 protein–RNA pairs in 77 ms