Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 ELOCP3-201ENST00000439303 348 ntBASIC6.81□□□□□ -1.32
HOXC9P31274 AL359265.1-201ENST00000440296 795 ntBASIC6.81□□□□□ -1.32
HOXC9P31274 TRIM31-AS1-204ENST00000440874 549 ntTSL 3 BASIC6.81□□□□□ -1.32
HOXC9P31274 AL354714.3-201ENST00000447284 493 ntBASIC6.81□□□□□ -1.32
HOXC9P31274 TCEA1P1-201ENST00000449716 880 ntBASIC6.81□□□□□ -1.32
HOXC9P31274 AL513533.1-201ENST00000453728 415 ntBASIC6.81□□□□□ -1.32
HOXC9P31274 RN7SL459P-201ENST00000481078 302 ntBASIC6.81□□□□□ -1.32
HOXC9P31274 RN7SL205P-201ENST00000490174 284 ntBASIC6.81□□□□□ -1.32
HOXC9P31274 AC022133.1-201ENST00000490961 571 ntBASIC6.81□□□□□ -1.32
HOXC9P31274 RPS12P31-201ENST00000491419 398 ntBASIC6.81□□□□□ -1.32
HOXC9P31274 CEACAMP10-202ENST00000495431 496 ntBASIC6.81□□□□□ -1.32
HOXC9P31274 AC098799.1-201ENST00000504752 800 ntBASIC6.81□□□□□ -1.32
HOXC9P31274 AC026434.1-201ENST00000511474 454 ntTSL 3 BASIC6.81□□□□□ -1.32
HOXC9P31274 AC010261.2-201ENST00000515563 588 ntTSL 2 BASIC6.81□□□□□ -1.32
HOXC9P31274 ATXN3-215ENST00000532032 1191 ntTSL 1 (best) BASIC6.81□□□□□ -1.32
HOXC9P31274 AC007406.1-201ENST00000544067 315 ntTSL 3 BASIC6.81□□□□□ -1.32
HOXC9P31274 MIR4270-201ENST00000581799 70 ntBASIC6.81□□□□□ -1.32
HOXC9P31274 RN7SL52P-201ENST00000584271 284 ntBASIC6.81□□□□□ -1.32
HOXC9P31274 AC079414.3-201ENST00000612986 1090 ntBASIC6.81□□□□□ -1.32
HOXC9P31274 RN7SL722P-201ENST00000617780 284 ntBASIC6.81□□□□□ -1.32
HOXC9P31274 RN7SL565P-201ENST00000618246 284 ntBASIC6.81□□□□□ -1.32
HOXC9P31274 PAK3-213ENST00000620137 2130 ntTSL 5 BASIC6.81□□□□□ -1.32
HOXC9P31274 AL022323.4-201ENST00000623980 13120 ntBASIC6.81□□□□□ -1.32
HOXC9P31274 NLRP3P1-201ENST00000622303 1785 ntBASIC6.81□□□□□ -1.32
HOXC9P31274 AMD1-204ENST00000368885 3438 ntAPPRIS P1 TSL 1 (best) BASIC6.81□□□□□ -1.32
HOXC9P31274 KLHL28-202ENST00000396128 6545 ntAPPRIS P1 TSL 1 (best) BASIC6.81□□□□□ -1.32
HOXC9P31274 BCLAF1-201ENST00000353331 7110 ntTSL 5 BASIC6.81□□□□□ -1.32
HOXC9P31274 TLR10-201ENST00000308973 3958 ntAPPRIS P1 TSL 5 BASIC6.81□□□□□ -1.32
HOXC9P31274 RPL7-204ENST00000396467 1526 ntTSL 3 BASIC6.81□□□□□ -1.32
HOXC9P31274 MCM3AP-AS1-204ENST00000432735 2302 ntTSL 2 BASIC6.81□□□□□ -1.32
HOXC9P31274 ZNF788-203ENST00000430298 3941 ntTSL 2 BASIC6.81□□□□□ -1.32
HOXC9P31274 DYNC1I2-225ENST00000508530 2494 ntAPPRIS ALT1 TSL 1 (best) BASIC6.81□□□□□ -1.32
HOXC9P31274 AC016745.2-201ENST00000608834 3443 ntBASIC6.8□□□□□ -1.32
HOXC9P31274 ABCB11-201ENST00000263817 4775 ntAPPRIS P1 TSL 1 (best) BASIC6.8□□□□□ -1.32
HOXC9P31274 HACD3-209ENST00000566511 1782 ntTSL 5 BASIC6.8□□□□□ -1.32
HOXC9P31274 ARHGAP20-204ENST00000528829 5880 ntAPPRIS ALT2 TSL 1 (best) BASIC6.8□□□□□ -1.32
HOXC9P31274 ZNF268-205ENST00000536435 13475 ntAPPRIS P1 TSL 1 (best) BASIC6.8□□□□□ -1.32
HOXC9P31274 PUM2-202ENST00000338086 6112 ntAPPRIS P1 TSL 1 (best) BASIC6.8□□□□□ -1.32
HOXC9P31274 PIH1D2-201ENST00000280350 1241 ntAPPRIS P1 TSL 5 BASIC6.8□□□□□ -1.32
HOXC9P31274 RNU6-398P-201ENST00000384143 109 ntBASIC6.8□□□□□ -1.32
HOXC9P31274 RPL10P10-201ENST00000403509 664 ntBASIC6.8□□□□□ -1.32
HOXC9P31274 LINC01690-201ENST00000424837 576 ntTSL 2 BASIC6.8□□□□□ -1.32
HOXC9P31274 PIH1D2-202ENST00000431456 1245 ntTSL 5 BASIC6.8□□□□□ -1.32
HOXC9P31274 AC093414.1-201ENST00000434712 514 ntBASIC6.8□□□□□ -1.32
HOXC9P31274 RPL5P25-201ENST00000441148 775 ntBASIC6.8□□□□□ -1.32
HOXC9P31274 LINC01729-201ENST00000450640 358 ntTSL 3 BASIC6.8□□□□□ -1.32
HOXC9P31274 HNRNPDLP2-201ENST00000455248 751 ntBASIC6.8□□□□□ -1.32
HOXC9P31274 AC096741.1-201ENST00000472250 846 ntBASIC6.8□□□□□ -1.32
HOXC9P31274 RPL5P22-201ENST00000480199 884 ntBASIC6.8□□□□□ -1.32
HOXC9P31274 GAPDHP56-201ENST00000506031 988 ntBASIC6.8□□□□□ -1.32
HOXC9P31274 SDHAF2-208ENST00000543265 438 ntTSL 5 BASIC6.8□□□□□ -1.32
HOXC9P31274 PRR4-212ENST00000544994 326 ntAPPRIS ALT2 TSL 1 (best) BASIC6.8□□□□□ -1.32
HOXC9P31274 ZFAND6-213ENST00000559835 1446 ntAPPRIS P1 TSL 1 (best) BASIC6.8□□□□□ -1.32
HOXC9P31274 AC090970.1-201ENST00000561207 381 ntTSL 5 BASIC6.8□□□□□ -1.32
HOXC9P31274 AC115989.2-201ENST00000578640 563 ntBASIC6.8□□□□□ -1.32
HOXC9P31274 AC005856.1-201ENST00000585921 286 ntTSL 3 BASIC6.8□□□□□ -1.32
HOXC9P31274 ZNF253-203ENST00000589717 3519 ntAPPRIS P1 TSL 1 (best) BASIC6.8□□□□□ -1.32
HOXC9P31274 MIR378J-201ENST00000611988 109 ntBASIC6.8□□□□□ -1.32
HOXC9P31274 AL354950.1-201ENST00000614150 568 ntBASIC6.8□□□□□ -1.32
HOXC9P31274 AJ009632.2-207ENST00000634659 527 ntTSL 5 BASIC6.8□□□□□ -1.32
HOXC9P31274 DCTN4-201ENST00000424236 4054 ntTSL 2 BASIC6.8□□□□□ -1.32
HOXC9P31274 AHNAK2-201ENST00000333244 18254 ntAPPRIS P1 TSL 5 BASIC6.8□□□□□ -1.32
HOXC9P31274 ZCCHC6-204ENST00000375957 2262 ntTSL 2 BASIC6.8□□□□□ -1.32
HOXC9P31274 AL158835.1-203ENST00000415305 3149 ntTSL 1 (best) BASIC6.8□□□□□ -1.32
HOXC9P31274 CDK14-206ENST00000436577 4787 ntTSL 2 BASIC6.8□□□□□ -1.32
HOXC9P31274 AP002478.1-201ENST00000577848 1455 ntTSL 1 (best) BASIC6.79□□□□□ -1.32
HOXC9P31274 CTNND1-214ENST00000526772 4966 ntTSL 1 (best) BASIC6.79□□□□□ -1.32
HOXC9P31274 AC109811.1-201ENST00000512833 2807 ntTSL 1 (best) BASIC6.79□□□□□ -1.32
HOXC9P31274 TRAT1-202ENST00000426646 1596 ntTSL 1 (best) BASIC6.79□□□□□ -1.32
HOXC9P31274 AC034229.2-201ENST00000566945 2508 ntBASIC6.79□□□□□ -1.32
HOXC9P31274 ALB-219ENST00000621085 1418 ntTSL 5 BASIC6.79□□□□□ -1.32
HOXC9P31274 IL3-201ENST00000296870 1050 ntAPPRIS P1 TSL 1 (best) BASIC6.79□□□□□ -1.32
HOXC9P31274 CCNB3-202ENST00000348603 1201 ntTSL 1 (best) BASIC6.79□□□□□ -1.32
HOXC9P31274 XAGE1A-202ENST00000375600 474 ntTSL 1 (best) BASIC6.79□□□□□ -1.32
HOXC9P31274 XAGE1B-202ENST00000375613 474 ntTSL 1 (best) BASIC6.79□□□□□ -1.32
HOXC9P31274 CCNB3-203ENST00000376038 1201 ntTSL 5 BASIC6.79□□□□□ -1.32
HOXC9P31274 LINC02528-201ENST00000417800 381 ntTSL 2 BASIC6.79□□□□□ -1.32
HOXC9P31274 AC006369.1-201ENST00000419425 548 ntTSL 3 BASIC6.79□□□□□ -1.32
HOXC9P31274 AC004074.1-201ENST00000421810 1063 ntBASIC6.79□□□□□ -1.32
HOXC9P31274 AC004415.1-201ENST00000422697 449 ntTSL 3 BASIC6.79□□□□□ -1.32
HOXC9P31274 AL133268.3-201ENST00000428903 577 ntTSL 5 BASIC6.79□□□□□ -1.32
HOXC9P31274 TPT1P13-201ENST00000449760 499 ntBASIC6.79□□□□□ -1.32
HOXC9P31274 RN7SL319P-201ENST00000480656 221 ntBASIC6.79□□□□□ -1.32
HOXC9P31274 SLC9A9-AS2-201ENST00000490153 327 ntTSL 5 BASIC6.79□□□□□ -1.32
HOXC9P31274 AC091917.2-201ENST00000505002 744 ntBASIC6.79□□□□□ -1.32
HOXC9P31274 LINC02463-201ENST00000546414 497 ntTSL 3 BASIC6.79□□□□□ -1.32
HOXC9P31274 AC008147.3-201ENST00000548666 354 ntBASIC6.79□□□□□ -1.32
HOXC9P31274 AC004160.1-210ENST00000599875 689 ntTSL 5 BASIC6.79□□□□□ -1.32
HOXC9P31274 AC010632.3-201ENST00000611377 369 ntBASIC6.79□□□□□ -1.32
HOXC9P31274 MIR6133-201ENST00000617057 108 ntBASIC6.79□□□□□ -1.32
HOXC9P31274 AC087633.2-201ENST00000618611 725 ntTSL 3 BASIC6.79□□□□□ -1.32
HOXC9P31274 CTSLP2-203ENST00000628708 493 ntTSL 5 BASIC6.79□□□□□ -1.32
HOXC9P31274 ZC3H12C-201ENST00000278590 8807 ntTSL 2 BASIC6.79□□□□□ -1.32
HOXC9P31274 SSH1-202ENST00000326495 13040 ntAPPRIS P3 TSL 1 (best) BASIC6.79□□□□□ -1.32
HOXC9P31274 GIGYF2-246ENST00000629305 7878 ntTSL 5 BASIC6.79□□□□□ -1.32
HOXC9P31274 RAB3GAP1-207ENST00000539493 3161 ntTSL 5 BASIC6.79□□□□□ -1.32
HOXC9P31274 AL355488.2-201ENST00000609909 2850 ntBASIC6.79□□□□□ -1.32
HOXC9P31274 KLHL13-203ENST00000371878 3234 ntTSL 2 BASIC6.78□□□□□ -1.32
HOXC9P31274 SLC4A10-202ENST00000375514 5710 ntAPPRIS ALT1 TSL 2 BASIC6.78□□□□□ -1.32
HOXC9P31274 BDNF-AS-202ENST00000499568 2039 ntTSL 1 (best) BASIC6.78□□□□□ -1.32
Retrieved 100 of 98,524 protein–RNA pairs in 81.7 ms