Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 PROM1-220ENST00000540805 3908 ntAPPRIS ALT2 TSL 5 BASIC4.97□□□□□ -1.61
SDC1P18827 ARID2-202ENST00000422737 5481 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
SDC1P18827 C15orf54-202ENST00000625107 3078 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
SDC1P18827 AC092747.4-201ENST00000620519 1861 ntBASIC4.97□□□□□ -1.61
SDC1P18827 SMARCA2-206ENST00000382185 1584 ntTSL 2 BASIC4.97□□□□□ -1.61
SDC1P18827 MDM2-201ENST00000258148 1361 ntAPPRIS ALT2 TSL 1 (best) BASIC4.97□□□□□ -1.61
SDC1P18827 IRAK4-203ENST00000448290 1381 ntTSL 5 BASIC4.97□□□□□ -1.61
SDC1P18827 CASC19-248ENST00000641674 1356 ntBASIC4.97□□□□□ -1.61
SDC1P18827 LINC01317-201ENST00000366209 779 ntTSL 5 BASIC4.97□□□□□ -1.61
SDC1P18827 IGLV7-43-201ENST00000390298 385 ntAPPRIS P1 BASIC4.97□□□□□ -1.61
SDC1P18827 AL031985.1-201ENST00000392713 418 ntBASIC4.97□□□□□ -1.61
SDC1P18827 LINC00317-201ENST00000419069 612 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
SDC1P18827 RPS29P14-201ENST00000431518 171 ntBASIC4.97□□□□□ -1.61
SDC1P18827 DEFB122-201ENST00000433453 499 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
SDC1P18827 EIF4A1P6-201ENST00000448133 1210 ntBASIC4.97□□□□□ -1.61
SDC1P18827 RPS27AP2-201ENST00000457576 465 ntBASIC4.97□□□□□ -1.61
SDC1P18827 RPL12P24-201ENST00000474907 486 ntBASIC4.97□□□□□ -1.61
SDC1P18827 RN7SL273P-201ENST00000481561 299 ntBASIC4.97□□□□□ -1.61
SDC1P18827 RN7SL466P-201ENST00000497546 295 ntBASIC4.97□□□□□ -1.61
SDC1P18827 LINC01332-201ENST00000506612 502 ntTSL 4 BASIC4.97□□□□□ -1.61
SDC1P18827 RNU6-941P-201ENST00000516346 108 ntBASIC4.97□□□□□ -1.61
SDC1P18827 TMEM97P2-201ENST00000517841 403 ntBASIC4.97□□□□□ -1.61
SDC1P18827 AC091819.1-201ENST00000518330 630 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
SDC1P18827 AC008663.1-201ENST00000519821 455 ntTSL 4 BASIC4.97□□□□□ -1.61
SDC1P18827 AC025370.1-201ENST00000523775 583 ntTSL 5 BASIC4.97□□□□□ -1.61
SDC1P18827 NEDD8-203ENST00000524927 653 ntTSL 2 BASIC4.97□□□□□ -1.61
SDC1P18827 AC110275.1-201ENST00000534420 623 ntAPPRIS P1 TSL 4 BASIC4.97□□□□□ -1.61
SDC1P18827 CA1-224ENST00000542576 1236 ntAPPRIS P1 TSL 5 BASIC4.97□□□□□ -1.61
SDC1P18827 AL133166.1-205ENST00000548306 569 ntTSL 4 BASIC4.97□□□□□ -1.61
SDC1P18827 AC022404.1-201ENST00000555320 273 ntBASIC4.97□□□□□ -1.61
SDC1P18827 PWRN1-207ENST00000565893 818 ntTSL 3 BASIC4.97□□□□□ -1.61
SDC1P18827 AC103808.4-201ENST00000577258 391 ntTSL 3 BASIC4.97□□□□□ -1.61
SDC1P18827 AC024267.4-201ENST00000580782 683 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
SDC1P18827 VN1R81P-201ENST00000602085 372 ntBASIC4.97□□□□□ -1.61
SDC1P18827 AC138473.1-201ENST00000605717 526 ntBASIC4.97□□□□□ -1.61
SDC1P18827 AL024498.1-201ENST00000606522 1100 ntTSL 3 BASIC4.97□□□□□ -1.61
SDC1P18827 AL356752.1-201ENST00000615844 593 ntBASIC4.97□□□□□ -1.61
SDC1P18827 AC108359.1-201ENST00000616451 1211 ntBASIC4.97□□□□□ -1.61
SDC1P18827 AC009093.5-201ENST00000620963 359 ntTSL 2 BASIC4.97□□□□□ -1.61
SDC1P18827 Metazoa_SRP.130-201ENST00000622625 267 ntBASIC4.97□□□□□ -1.61
SDC1P18827 AJ009632.2-203ENST00000634708 1205 ntTSL 5 BASIC4.97□□□□□ -1.61
SDC1P18827 BLZF1-203ENST00000367808 2749 ntAPPRIS P1 TSL 1 (best) BASIC4.97□□□□□ -1.61
SDC1P18827 OR55B1P-203ENST00000641518 2602 ntBASIC4.97□□□□□ -1.61
SDC1P18827 SCN2A-203ENST00000375437 8792 ntAPPRIS ALT1 TSL 5 BASIC4.97□□□□□ -1.61
SDC1P18827 NSD1-202ENST00000354179 12195 ntTSL 5 BASIC4.97□□□□□ -1.61
SDC1P18827 SRPK2-201ENST00000357311 3700 ntAPPRIS P3 TSL 1 (best) BASIC4.97□□□□□ -1.61
SDC1P18827 OPRM1-206ENST00000419506 1402 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
SDC1P18827 ASXL3-201ENST00000269197 11399 ntAPPRIS P2 TSL 5 BASIC4.97□□□□□ -1.61
SDC1P18827 PSG1-201ENST00000244296 2276 ntAPPRIS P3 TSL 1 (best) BASIC4.97□□□□□ -1.61
SDC1P18827 ZNF283-201ENST00000324461 2297 ntAPPRIS P1 TSL 1 (best) BASIC4.97□□□□□ -1.61
SDC1P18827 ZNF571-201ENST00000328550 4113 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.61
SDC1P18827 AC068870.3-201ENST00000625077 2536 ntBASIC4.96□□□□□ -1.61
SDC1P18827 EPB41L2-226ENST00000530757 4360 ntTSL 2 BASIC4.96□□□□□ -1.61
SDC1P18827 MRRFP1-201ENST00000435941 1675 ntBASIC4.96□□□□□ -1.61
SDC1P18827 MCM3AP-AS1-204ENST00000432735 2302 ntTSL 2 BASIC4.96□□□□□ -1.61
SDC1P18827 MOXD1-201ENST00000336749 2950 ntTSL 1 (best) BASIC4.96□□□□□ -1.61
SDC1P18827 STXBP4-203ENST00000405898 2229 ntTSL 5 BASIC4.96□□□□□ -1.62
SDC1P18827 TBC1D23-201ENST00000344949 3656 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.62
SDC1P18827 CENPW-203ENST00000368328 750 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.62
SDC1P18827 DEFB119-203ENST00000376321 457 ntAPPRIS P3 TSL 1 (best) BASIC4.96□□□□□ -1.62
SDC1P18827 MIR621-201ENST00000384919 96 ntBASIC4.96□□□□□ -1.62
SDC1P18827 RNU1-149P-201ENST00000390870 161 ntBASIC4.96□□□□□ -1.62
SDC1P18827 AC005323.2-201ENST00000399342 583 ntTSL 3 BASIC4.96□□□□□ -1.62
SDC1P18827 AL390316.1-201ENST00000406279 553 ntBASIC4.96□□□□□ -1.62
SDC1P18827 AL390774.1-201ENST00000411924 246 ntBASIC4.96□□□□□ -1.62
SDC1P18827 CDY17P-201ENST00000414121 1282 ntBASIC4.96□□□□□ -1.62
SDC1P18827 GNG5P5-201ENST00000420444 220 ntBASIC4.96□□□□□ -1.62
SDC1P18827 MGAT2P2-201ENST00000427194 797 ntBASIC4.96□□□□□ -1.62
SDC1P18827 CYCSP6-201ENST00000434498 302 ntBASIC4.96□□□□□ -1.62
SDC1P18827 CYCSP12-201ENST00000437729 300 ntBASIC4.96□□□□□ -1.62
SDC1P18827 RPS11P7-201ENST00000442125 465 ntBASIC4.96□□□□□ -1.62
SDC1P18827 CYCSP24-201ENST00000445119 316 ntBASIC4.96□□□□□ -1.62
SDC1P18827 RPL7P45-201ENST00000455851 743 ntBASIC4.96□□□□□ -1.62
SDC1P18827 COX6B1P2-201ENST00000489624 230 ntBASIC4.96□□□□□ -1.62
SDC1P18827 RN7SL547P-201ENST00000490793 290 ntBASIC4.96□□□□□ -1.62
SDC1P18827 HMGB3P14-201ENST00000494195 599 ntBASIC4.96□□□□□ -1.62
SDC1P18827 CRNDE-201ENST00000501177 614 ntTSL 1 (best) BASIC4.96□□□□□ -1.62
SDC1P18827 AC097173.1-201ENST00000505862 819 ntBASIC4.96□□□□□ -1.62
SDC1P18827 AC011389.1-203ENST00000513790 573 ntTSL 4 BASIC4.96□□□□□ -1.62
SDC1P18827 PIWIL4-203ENST00000537419 831 ntTSL 2 BASIC4.96□□□□□ -1.62
SDC1P18827 AC126177.5-201ENST00000549599 178 ntBASIC4.96□□□□□ -1.62
SDC1P18827 AC066613.1-201ENST00000559977 1053 ntTSL 2 BASIC4.96□□□□□ -1.62
SDC1P18827 AC090403.1-202ENST00000582108 833 ntTSL 3 BASIC4.96□□□□□ -1.62
SDC1P18827 LINC00663-202ENST00000586816 306 ntTSL 2 BASIC4.96□□□□□ -1.62
SDC1P18827 BNIP3P35-201ENST00000604530 490 ntBASIC4.96□□□□□ -1.62
SDC1P18827 LINC01338-201ENST00000627179 632 ntTSL 3 BASIC4.96□□□□□ -1.62
SDC1P18827 LAMTOR5-AS1-244ENST00000629484 780 ntTSL 5 BASIC4.96□□□□□ -1.62
SDC1P18827 PIGN-217ENST00000591238 1622 ntTSL 5 BASIC4.96□□□□□ -1.62
SDC1P18827 MYO9A-203ENST00000444904 7749 ntAPPRIS P2 TSL 5 BASIC4.96□□□□□ -1.62
SDC1P18827 GRID2-208ENST00000611049 4844 ntTSL 1 (best) BASIC4.96□□□□□ -1.62
SDC1P18827 IL1R1-202ENST00000409329 1862 ntTSL 5 BASIC4.96□□□□□ -1.62
SDC1P18827 DTNA-227ENST00000597599 1869 ntAPPRIS ALT2 TSL 2 BASIC4.96□□□□□ -1.62
SDC1P18827 DUSP19-202ENST00000354221 5176 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.62
SDC1P18827 GCSAML-201ENST00000366488 3820 ntAPPRIS P3 TSL 1 (best) BASIC4.96□□□□□ -1.62
SDC1P18827 ARHGEF6-203ENST00000370622 4779 ntTSL 1 (best) BASIC4.96□□□□□ -1.62
SDC1P18827 KSR2-202ENST00000425217 17008 ntTSL 5 BASIC4.95□□□□□ -1.62
SDC1P18827 FAM216B-201ENST00000313851 3243 ntAPPRIS P1 TSL 1 (best) BASIC4.95□□□□□ -1.62
SDC1P18827 BANK1-203ENST00000444316 3141 ntTSL 2 BASIC4.95□□□□□ -1.62
SDC1P18827 MTUS1-202ENST00000297488 3731 ntAPPRIS ALT1 TSL 1 (best) BASIC4.95□□□□□ -1.62
SDC1P18827 SLC10A7-203ENST00000432059 3747 ntTSL 1 (best) BASIC4.95□□□□□ -1.62
Retrieved 100 of 98,524 protein–RNA pairs in 100.8 ms