Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 AC022915.1-201ENST00000521660 289 ntTSL 3 BASIC10.05□□□□□ -0.8
SHROOM4Q9ULL8 AC104241.1-201ENST00000530039 628 ntTSL 3 BASIC10.05□□□□□ -0.8
SHROOM4Q9ULL8 OR11H7-201ENST00000553765 945 ntAPPRIS P1 BASIC10.05□□□□□ -0.8
SHROOM4Q9ULL8 AP000904.1-201ENST00000609911 951 ntTSL 3 BASIC10.05□□□□□ -0.8
SHROOM4Q9ULL8 OR5H15-202ENST00000641450 1229 ntAPPRIS P1 BASIC10.05□□□□□ -0.8
SHROOM4Q9ULL8 PSD3-204ENST00000440756 11690 ntAPPRIS ALT2 TSL 5 BASIC10.05□□□□□ -0.8
SHROOM4Q9ULL8 AC114774.1-201ENST00000507410 1770 ntBASIC10.05□□□□□ -0.8
SHROOM4Q9ULL8 SUPT3H-203ENST00000371460 2389 ntAPPRIS P4 TSL 1 (best) BASIC10.05□□□□□ -0.8
SHROOM4Q9ULL8 NXF4-202ENST00000416098 1465 ntBASIC10.05□□□□□ -0.8
SHROOM4Q9ULL8 PARD3B-214ENST00000622699 7442 ntTSL 5 BASIC10.05□□□□□ -0.8
SHROOM4Q9ULL8 C3orf58-202ENST00000441925 3260 ntTSL 2 BASIC10.05□□□□□ -0.8
SHROOM4Q9ULL8 TMEM257-201ENST00000408967 2441 ntAPPRIS P1 BASIC10.05□□□□□ -0.8
SHROOM4Q9ULL8 AC091046.3-201ENST00000631455 1574 ntBASIC10.05□□□□□ -0.8
SHROOM4Q9ULL8 C16orf87-202ENST00000394806 6640 ntTSL 1 (best) BASIC10.05□□□□□ -0.8
SHROOM4Q9ULL8 KYNUP3-201ENST00000574386 1341 ntBASIC10.05□□□□□ -0.8
SHROOM4Q9ULL8 KBTBD8-201ENST00000417314 4680 ntAPPRIS P1 TSL 2 BASIC10.05□□□□□ -0.8
SHROOM4Q9ULL8 RBMS2-201ENST00000262031 8382 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
SHROOM4Q9ULL8 LARP4-202ENST00000347328 3621 ntTSL 1 (best) BASIC10.05□□□□□ -0.8
SHROOM4Q9ULL8 FLRT3-201ENST00000341420 3971 ntAPPRIS P1 TSL 2 BASIC10.05□□□□□ -0.8
SHROOM4Q9ULL8 KCNJ13-203ENST00000410029 1177 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
SHROOM4Q9ULL8 PARGP1-202ENST00000440803 790 ntTSL 2 BASIC10.04□□□□□ -0.8
SHROOM4Q9ULL8 NUTF2P7-201ENST00000453086 375 ntBASIC10.04□□□□□ -0.8
SHROOM4Q9ULL8 AL161747.1-201ENST00000480068 358 ntBASIC10.04□□□□□ -0.8
SHROOM4Q9ULL8 OR4A43P-201ENST00000532938 908 ntBASIC10.04□□□□□ -0.8
SHROOM4Q9ULL8 AL163932.1-201ENST00000555776 542 ntTSL 4 BASIC10.04□□□□□ -0.8
SHROOM4Q9ULL8 AC009137.2-201ENST00000568179 641 ntTSL 3 BASIC10.04□□□□□ -0.8
SHROOM4Q9ULL8 AC118757.1-201ENST00000586982 453 ntTSL 2 BASIC10.04□□□□□ -0.8
SHROOM4Q9ULL8 AC105094.2-202ENST00000590968 566 ntTSL 2 BASIC10.04□□□□□ -0.8
SHROOM4Q9ULL8 RNF138P2-201ENST00000603490 592 ntBASIC10.04□□□□□ -0.8
SHROOM4Q9ULL8 EIF3FP1-201ENST00000613970 806 ntBASIC10.04□□□□□ -0.8
SHROOM4Q9ULL8 KIF1B-204ENST00000377086 10669 ntTSL 1 (best) BASIC10.04□□□□□ -0.8
SHROOM4Q9ULL8 MEF2C-202ENST00000424173 6336 ntAPPRIS P3 TSL 1 (best) BASIC10.04□□□□□ -0.8
SHROOM4Q9ULL8 TRIM38-201ENST00000357085 9413 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
SHROOM4Q9ULL8 EIF3E-206ENST00000519030 1324 ntTSL 5 BASIC10.04□□□□□ -0.8
SHROOM4Q9ULL8 DAZ1-206ENST00000620725 1891 ntTSL 5 BASIC10.04□□□□□ -0.8
SHROOM4Q9ULL8 FBXO9-201ENST00000244426 4559 ntTSL 1 (best) BASIC10.04□□□□□ -0.8
SHROOM4Q9ULL8 MCM10-201ENST00000378694 4587 ntTSL 5 BASIC10.04□□□□□ -0.8
SHROOM4Q9ULL8 DCX-207ENST00000635795 9163 ntAPPRIS P4 TSL 1 (best) BASIC10.04□□□□□ -0.8
SHROOM4Q9ULL8 HTR1F-201ENST00000319595 3140 ntAPPRIS P1 BASIC10.04□□□□□ -0.8
SHROOM4Q9ULL8 GABRA1-218ENST00000637827 1838 ntAPPRIS P1 TSL 5 BASIC10.04□□□□□ -0.8
SHROOM4Q9ULL8 IGBP1P3-201ENST00000447449 1000 ntBASIC10.04□□□□□ -0.8
SHROOM4Q9ULL8 AC099344.3-201ENST00000454489 626 ntTSL 3 BASIC10.04□□□□□ -0.8
SHROOM4Q9ULL8 GTF2F2P1-201ENST00000511083 675 ntBASIC10.04□□□□□ -0.8
SHROOM4Q9ULL8 AC008149.1-201ENST00000551844 525 ntTSL 4 BASIC10.04□□□□□ -0.8
SHROOM4Q9ULL8 AL110118.1-201ENST00000553543 400 ntBASIC10.04□□□□□ -0.8
SHROOM4Q9ULL8 MIR4675-201ENST00000577898 77 ntBASIC10.04□□□□□ -0.8
SHROOM4Q9ULL8 AL713998.2-201ENST00000604538 1198 ntBASIC10.04□□□□□ -0.8
SHROOM4Q9ULL8 NF1P10-201ENST00000613227 742 ntBASIC10.04□□□□□ -0.8
SHROOM4Q9ULL8 FAM49B-229ENST00000615041 750 ntTSL 5 BASIC10.04□□□□□ -0.8
SHROOM4Q9ULL8 AC245389.2-201ENST00000616023 576 ntBASIC10.04□□□□□ -0.8
SHROOM4Q9ULL8 AC242843.1-201ENST00000618702 573 ntBASIC10.04□□□□□ -0.8
SHROOM4Q9ULL8 SNHG5-214ENST00000623001 598 ntTSL 2 BASIC10.04□□□□□ -0.8
SHROOM4Q9ULL8 AC073869.8-201ENST00000641806 335 ntBASIC10.04□□□□□ -0.8
SHROOM4Q9ULL8 C2orf83-206ENST00000642055 453 ntAPPRIS P3 BASIC10.04□□□□□ -0.8
SHROOM4Q9ULL8 TEDDM1-201ENST00000367565 2500 ntAPPRIS P1 BASIC10.03□□□□□ -0.8
SHROOM4Q9ULL8 MID1-206ENST00000380787 5973 ntAPPRIS P1 TSL 1 (best) BASIC10.03□□□□□ -0.8
SHROOM4Q9ULL8 DLEU7-AS1-201ENST00000413510 1806 ntTSL 1 (best) BASIC10.03□□□□□ -0.8
SHROOM4Q9ULL8 AC083899.1-201ENST00000454465 3819 ntBASIC10.03□□□□□ -0.8
SHROOM4Q9ULL8 LMO3-225ENST00000541295 3498 ntTSL 2 BASIC10.03□□□□□ -0.8
SHROOM4Q9ULL8 EOGT-208ENST00000540764 1584 ntAPPRIS P1 TSL 1 (best) BASIC10.03□□□□□ -0.8
SHROOM4Q9ULL8 RNU2-50P-201ENST00000410494 143 ntBASIC10.03□□□□□ -0.8
SHROOM4Q9ULL8 TPTE2P1-204ENST00000435256 593 ntBASIC10.03□□□□□ -0.8
SHROOM4Q9ULL8 AL590399.4-201ENST00000436561 601 ntBASIC10.03□□□□□ -0.8
SHROOM4Q9ULL8 CXorf51A-201ENST00000458472 431 ntAPPRIS P1 TSL 2 BASIC10.03□□□□□ -0.8
SHROOM4Q9ULL8 AC026979.1-201ENST00000492525 396 ntBASIC10.03□□□□□ -0.8
SHROOM4Q9ULL8 MRPS33-209ENST00000496958 688 ntAPPRIS P1 TSL 3 BASIC10.03□□□□□ -0.8
SHROOM4Q9ULL8 OR7H2P-201ENST00000513483 306 ntBASIC10.03□□□□□ -0.8
SHROOM4Q9ULL8 HAPLN1-206ENST00000514416 1145 ntTSL 5 BASIC10.03□□□□□ -0.8
SHROOM4Q9ULL8 AC083923.2-201ENST00000519880 574 ntTSL 4 BASIC10.03□□□□□ -0.8
SHROOM4Q9ULL8 SLC48A1-205ENST00000547002 751 ntTSL 3 BASIC10.03□□□□□ -0.8
SHROOM4Q9ULL8 LINC02303-204ENST00000555442 889 ntTSL 3 BASIC10.03□□□□□ -0.8
SHROOM4Q9ULL8 XIST-210ENST00000602863 775 ntTSL 3 BASIC10.03□□□□□ -0.8
SHROOM4Q9ULL8 SRGAP1-207ENST00000631006 8406 ntTSL 5 BASIC10.03□□□□□ -0.8
SHROOM4Q9ULL8 RBMS1-202ENST00000392753 3781 ntTSL 5 BASIC10.03□□□□□ -0.8
SHROOM4Q9ULL8 HAUS3-201ENST00000243706 5620 ntAPPRIS P1 TSL 1 (best) BASIC10.02□□□□□ -0.8
SHROOM4Q9ULL8 ART3-202ENST00000349321 1528 ntAPPRIS P3 TSL 1 (best) BASIC10.02□□□□□ -0.8
SHROOM4Q9ULL8 AL603840.1-201ENST00000422374 4063 ntTSL 2 BASIC10.02□□□□□ -0.8
SHROOM4Q9ULL8 AL136985.3-202ENST00000636386 2708 ntTSL 5 BASIC10.02□□□□□ -0.81
SHROOM4Q9ULL8 SETX-201ENST00000224140 11100 ntAPPRIS P2 TSL 1 (best) BASIC10.02□□□□□ -0.81
SHROOM4Q9ULL8 DDX3Y-201ENST00000336079 4445 ntAPPRIS P1 TSL 1 (best) BASIC10.02□□□□□ -0.81
SHROOM4Q9ULL8 R3HDM1-203ENST00000409606 3673 ntAPPRIS ALT1 TSL 2 BASIC10.02□□□□□ -0.81
SHROOM4Q9ULL8 RN7SKP100-201ENST00000411258 284 ntBASIC10.02□□□□□ -0.81
SHROOM4Q9ULL8 RIMKLBP2-201ENST00000424737 654 ntBASIC10.02□□□□□ -0.81
SHROOM4Q9ULL8 RSL24D1P6-201ENST00000426934 401 ntBASIC10.02□□□□□ -0.81
SHROOM4Q9ULL8 TRIM31-AS1-204ENST00000440874 549 ntTSL 3 BASIC10.02□□□□□ -0.81
SHROOM4Q9ULL8 LINC02215-201ENST00000503320 543 ntTSL 4 BASIC10.02□□□□□ -0.81
SHROOM4Q9ULL8 AC005674.1-201ENST00000503493 459 ntTSL 3 BASIC10.02□□□□□ -0.81
SHROOM4Q9ULL8 AC087855.1-201ENST00000518178 430 ntTSL 3 BASIC10.02□□□□□ -0.81
SHROOM4Q9ULL8 GTF2IP11-201ENST00000526931 420 ntBASIC10.02□□□□□ -0.81
SHROOM4Q9ULL8 AGBL1-AS1-203ENST00000566878 865 ntTSL 3 BASIC10.02□□□□□ -0.81
SHROOM4Q9ULL8 AC009597.2-201ENST00000604659 592 ntBASIC10.02□□□□□ -0.81
SHROOM4Q9ULL8 AL391358.1-201ENST00000605342 190 ntBASIC10.02□□□□□ -0.81
SHROOM4Q9ULL8 NEK3-211ENST00000629912 141 ntTSL 5 BASIC10.02□□□□□ -0.81
SHROOM4Q9ULL8 TRAPPC11-209ENST00000512476 2546 ntTSL 1 (best) BASIC10.02□□□□□ -0.81
SHROOM4Q9ULL8 NPM1-203ENST00000393820 1598 ntTSL 1 (best) BASIC10.01□□□□□ -0.81
SHROOM4Q9ULL8 AC099811.1-201ENST00000597755 1496 ntTSL 3 BASIC10.01□□□□□ -0.81
SHROOM4Q9ULL8 SLCO1C1-209ENST00000545604 2557 ntTSL 2 BASIC10.01□□□□□ -0.81
SHROOM4Q9ULL8 AMY1B-201ENST00000330330 1862 ntAPPRIS P1 TSL 1 (best) BASIC10.01□□□□□ -0.81
SHROOM4Q9ULL8 OR11H6-201ENST00000315519 993 ntAPPRIS P1 BASIC10.01□□□□□ -0.81
SHROOM4Q9ULL8 CFAP126-201ENST00000367974 774 ntAPPRIS P1 TSL 2 BASIC10.01□□□□□ -0.81
Retrieved 100 of 98,524 protein–RNA pairs in 77.7 ms