Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 AC025766.1-201ENST00000514061 409 ntTSL 5 BASIC7.26□□□□□ -1.25
CCDC39Q9UFE4 AC093599.1-201ENST00000515232 562 ntTSL 4 BASIC7.26□□□□□ -1.25
CCDC39Q9UFE4 RNU6-528P-201ENST00000516926 100 ntBASIC7.26□□□□□ -1.25
CCDC39Q9UFE4 AC091819.2-201ENST00000522292 490 ntTSL 3 BASIC7.26□□□□□ -1.25
CCDC39Q9UFE4 OR56A7P-201ENST00000524865 941 ntBASIC7.26□□□□□ -1.25
CCDC39Q9UFE4 AP002833.2-201ENST00000531585 462 ntTSL 3 BASIC7.26□□□□□ -1.25
CCDC39Q9UFE4 AHI1-217ENST00000534469 680 ntTSL 3 BASIC7.26□□□□□ -1.25
CCDC39Q9UFE4 AL163973.2-201ENST00000548096 288 ntTSL 3 BASIC7.26□□□□□ -1.25
CCDC39Q9UFE4 AC009803.1-202ENST00000551940 544 ntTSL 4 BASIC7.26□□□□□ -1.25
CCDC39Q9UFE4 LINC01481-201ENST00000552998 629 ntTSL 2 BASIC7.26□□□□□ -1.25
CCDC39Q9UFE4 AC023310.2-201ENST00000553844 547 ntBASIC7.26□□□□□ -1.25
CCDC39Q9UFE4 AL121579.2-201ENST00000555466 590 ntBASIC7.26□□□□□ -1.25
CCDC39Q9UFE4 AC135626.1-201ENST00000556983 435 ntBASIC7.26□□□□□ -1.25
CCDC39Q9UFE4 PSMA4-206ENST00000558341 719 ntTSL 5 BASIC7.26□□□□□ -1.25
CCDC39Q9UFE4 AC103876.1-202ENST00000561498 369 ntTSL 3 BASIC7.26□□□□□ -1.25
CCDC39Q9UFE4 AC083837.1-201ENST00000565297 2994 ntBASIC7.26□□□□□ -1.25
CCDC39Q9UFE4 AL354943.1-201ENST00000572103 781 ntBASIC7.26□□□□□ -1.25
CCDC39Q9UFE4 GALNT1-205ENST00000591081 1120 ntTSL 1 (best) BASIC7.26□□□□□ -1.25
CCDC39Q9UFE4 DPRXP5-201ENST00000604662 539 ntBASIC7.26□□□□□ -1.25
CCDC39Q9UFE4 AC072039.2-201ENST00000608883 439 ntBASIC7.26□□□□□ -1.25
CCDC39Q9UFE4 AC073114.1-201ENST00000612027 490 ntBASIC7.26□□□□□ -1.25
CCDC39Q9UFE4 AC007204.2-201ENST00000615022 616 ntBASIC7.26□□□□□ -1.25
CCDC39Q9UFE4 SNHG5-221ENST00000624295 632 ntTSL 5 BASIC7.26□□□□□ -1.25
CCDC39Q9UFE4 SEPT14P19-203ENST00000633205 211 ntBASIC7.26□□□□□ -1.25
CCDC39Q9UFE4 AL049767.1-201ENST00000636811 514 ntTSL 5 BASIC7.26□□□□□ -1.25
CCDC39Q9UFE4 RGPD2-203ENST00000638730 5306 ntAPPRIS ALT2 TSL 5 BASIC7.26□□□□□ -1.25
CCDC39Q9UFE4 LZTFL1-201ENST00000296135 4073 ntAPPRIS P1 TSL 1 (best) BASIC7.26□□□□□ -1.25
CCDC39Q9UFE4 DNM1P47-203ENST00000571780 12667 ntBASIC7.26□□□□□ -1.25
CCDC39Q9UFE4 HEATR1-203ENST00000366582 8447 ntAPPRIS P1 TSL 5 BASIC7.26□□□□□ -1.25
CCDC39Q9UFE4 BIRC3-207ENST00000615299 4342 ntAPPRIS P1 TSL 5 BASIC7.26□□□□□ -1.25
CCDC39Q9UFE4 ROR1-AS1-202ENST00000424995 2189 ntTSL 2 BASIC7.26□□□□□ -1.25
CCDC39Q9UFE4 ARCN1-202ENST00000359415 4038 ntTSL 1 (best) BASIC7.26□□□□□ -1.25
CCDC39Q9UFE4 AC123769.1-201ENST00000530992 3192 ntBASIC7.26□□□□□ -1.25
CCDC39Q9UFE4 AF121898.1-201ENST00000440763 1860 ntTSL 5 BASIC7.26□□□□□ -1.25
CCDC39Q9UFE4 FBXO9-201ENST00000244426 4559 ntTSL 1 (best) BASIC7.25□□□□□ -1.25
CCDC39Q9UFE4 FYB2-201ENST00000343433 3135 ntAPPRIS P1 TSL 1 (best) BASIC7.25□□□□□ -1.25
CCDC39Q9UFE4 TLR6-201ENST00000381950 2938 ntAPPRIS P1 BASIC7.25□□□□□ -1.25
CCDC39Q9UFE4 RRN3P1-201ENST00000514813 3645 ntTSL 2 BASIC7.25□□□□□ -1.25
CCDC39Q9UFE4 SUCLG1-201ENST00000393868 1475 ntAPPRIS P1 TSL 1 (best) BASIC7.25□□□□□ -1.25
CCDC39Q9UFE4 AC007744.1-201ENST00000607540 2289 ntTSL 5 BASIC7.25□□□□□ -1.25
CCDC39Q9UFE4 NBPF19-201ENST00000369227 3670 ntTSL 5 BASIC7.25□□□□□ -1.25
CCDC39Q9UFE4 ADAMTS9-AS2-201ENST00000460833 3691 ntTSL 1 (best) BASIC7.25□□□□□ -1.25
CCDC39Q9UFE4 NBPF20-203ENST00000594479 3670 ntTSL 5 BASIC7.25□□□□□ -1.25
CCDC39Q9UFE4 NBPF14-210ENST00000621066 3670 ntTSL 5 BASIC7.25□□□□□ -1.25
CCDC39Q9UFE4 OCM2-201ENST00000257627 696 ntAPPRIS P1 TSL 1 (best) BASIC7.25□□□□□ -1.25
CCDC39Q9UFE4 DEFB112-201ENST00000322246 342 ntAPPRIS P1 TSL 1 (best) BASIC7.25□□□□□ -1.25
CCDC39Q9UFE4 SPINK14-201ENST00000356972 294 ntAPPRIS P1 TSL 1 (best) BASIC7.25□□□□□ -1.25
CCDC39Q9UFE4 Y_RNA.11-201ENST00000362375 109 ntBASIC7.25□□□□□ -1.25
CCDC39Q9UFE4 SNORD113-6-201ENST00000363345 75 ntBASIC7.25□□□□□ -1.25
CCDC39Q9UFE4 RNU6-618P-201ENST00000363518 112 ntBASIC7.25□□□□□ -1.25
CCDC39Q9UFE4 MIR1266-201ENST00000408125 84 ntBASIC7.25□□□□□ -1.25
CCDC39Q9UFE4 RN7SKP17-201ENST00000411242 351 ntBASIC7.25□□□□□ -1.25
CCDC39Q9UFE4 MTND1P21-201ENST00000412991 285 ntBASIC7.25□□□□□ -1.25
CCDC39Q9UFE4 CDK8P2-201ENST00000415020 547 ntBASIC7.25□□□□□ -1.25
CCDC39Q9UFE4 AC097717.1-228ENST00000417006 754 ntTSL 3 BASIC7.25□□□□□ -1.25
CCDC39Q9UFE4 AL513175.2-201ENST00000422071 443 ntBASIC7.25□□□□□ -1.25
CCDC39Q9UFE4 AL139184.1-202ENST00000422303 222 ntBASIC7.25□□□□□ -1.25
CCDC39Q9UFE4 AL021026.1-201ENST00000422841 658 ntTSL 3 BASIC7.25□□□□□ -1.25
CCDC39Q9UFE4 AC093422.3-201ENST00000428506 305 ntBASIC7.25□□□□□ -1.25
CCDC39Q9UFE4 RPL12P16-201ENST00000431098 498 ntBASIC7.25□□□□□ -1.25
CCDC39Q9UFE4 GAPDHP75-201ENST00000433910 943 ntBASIC7.25□□□□□ -1.25
CCDC39Q9UFE4 LRRC23-208ENST00000436789 796 ntTSL 3 BASIC7.25□□□□□ -1.25
CCDC39Q9UFE4 ST6GAL2-IT1-201ENST00000446058 388 ntTSL 2 BASIC7.25□□□□□ -1.25
CCDC39Q9UFE4 CCRL1P1-201ENST00000449542 1053 ntBASIC7.25□□□□□ -1.25
CCDC39Q9UFE4 AL133477.1-201ENST00000457472 514 ntBASIC7.25□□□□□ -1.25
CCDC39Q9UFE4 AL603882.1-201ENST00000463059 681 ntBASIC7.25□□□□□ -1.25
CCDC39Q9UFE4 CREM-220ENST00000463314 964 ntTSL 2 BASIC7.25□□□□□ -1.25
CCDC39Q9UFE4 RN7SL83P-201ENST00000468131 297 ntBASIC7.25□□□□□ -1.25
CCDC39Q9UFE4 SETP6-201ENST00000479329 568 ntBASIC7.25□□□□□ -1.25
CCDC39Q9UFE4 CR383656.1-201ENST00000484916 377 ntBASIC7.25□□□□□ -1.25
CCDC39Q9UFE4 C4orf33-204ENST00000502887 1126 ntTSL 1 (best) BASIC7.25□□□□□ -1.25
CCDC39Q9UFE4 LINC02377-202ENST00000505436 523 ntTSL 5 BASIC7.25□□□□□ -1.25
CCDC39Q9UFE4 AC098587.1-201ENST00000508241 540 ntTSL 4 BASIC7.25□□□□□ -1.25
CCDC39Q9UFE4 AC147055.3-201ENST00000510547 851 ntBASIC7.25□□□□□ -1.25
CCDC39Q9UFE4 AC093752.1-206ENST00000511823 336 ntBASIC7.25□□□□□ -1.25
CCDC39Q9UFE4 RNA5SP96-201ENST00000516041 107 ntBASIC7.25□□□□□ -1.25
CCDC39Q9UFE4 AC131935.1-201ENST00000524621 333 ntBASIC7.25□□□□□ -1.25
CCDC39Q9UFE4 AP003557.1-202ENST00000528978 562 ntTSL 4 BASIC7.25□□□□□ -1.25
CCDC39Q9UFE4 RPL3P13-201ENST00000550415 216 ntBASIC7.25□□□□□ -1.25
CCDC39Q9UFE4 NPM1P5-201ENST00000557228 838 ntBASIC7.25□□□□□ -1.25
CCDC39Q9UFE4 AC023968.1-201ENST00000560719 475 ntBASIC7.25□□□□□ -1.25
CCDC39Q9UFE4 AP3S2-214ENST00000560940 519 ntTSL 5 BASIC7.25□□□□□ -1.25
CCDC39Q9UFE4 AC137800.1-201ENST00000562976 573 ntTSL 4 BASIC7.25□□□□□ -1.25
CCDC39Q9UFE4 AL133297.1-201ENST00000568149 404 ntTSL 2 BASIC7.25□□□□□ -1.25
CCDC39Q9UFE4 RAB27A-212ENST00000569493 1013 ntAPPRIS P1 TSL 1 (best) BASIC7.25□□□□□ -1.25
CCDC39Q9UFE4 AC090616.1-201ENST00000583895 447 ntBASIC7.25□□□□□ -1.25
CCDC39Q9UFE4 AC097717.1-211ENST00000600604 687 ntTSL 5 BASIC7.25□□□□□ -1.25
CCDC39Q9UFE4 AC036176.3-201ENST00000602456 418 ntBASIC7.25□□□□□ -1.25
CCDC39Q9UFE4 AC004805.3-201ENST00000603178 310 ntBASIC7.25□□□□□ -1.25
CCDC39Q9UFE4 AL137072.1-201ENST00000603444 466 ntBASIC7.25□□□□□ -1.25
CCDC39Q9UFE4 IGKV2OR2-7D-201ENST00000603664 304 ntBASIC7.25□□□□□ -1.25
CCDC39Q9UFE4 IGKV2OR2-7-201ENST00000604652 304 ntBASIC7.25□□□□□ -1.25
CCDC39Q9UFE4 AC138749.5-201ENST00000611461 208 ntBASIC7.25□□□□□ -1.25
CCDC39Q9UFE4 VIPR1-AS1-221ENST00000626992 602 ntTSL 5 BASIC7.25□□□□□ -1.25
CCDC39Q9UFE4 LYVE1-201ENST00000256178 3273 ntAPPRIS P1 TSL 1 (best) BASIC7.25□□□□□ -1.25
CCDC39Q9UFE4 SH3D19-201ENST00000304527 5273 ntAPPRIS P3 TSL 2 BASIC7.25□□□□□ -1.25
CCDC39Q9UFE4 AOX3P-204ENST00000491025 2107 ntBASIC7.25□□□□□ -1.25
CCDC39Q9UFE4 LRRC36-202ENST00000435835 1765 ntTSL 2 BASIC7.25□□□□□ -1.25
CCDC39Q9UFE4 GCSAML-202ENST00000366489 4030 ntAPPRIS ALT2 TSL 2 BASIC7.25□□□□□ -1.25
CCDC39Q9UFE4 FANCD2P2-201ENST00000437591 1400 ntBASIC7.25□□□□□ -1.25
Retrieved 100 of 98,524 protein–RNA pairs in 73.7 ms