Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 LINC01501-201ENST00000427523 409 ntTSL 3 BASIC6.12□□□□□ -1.43
TDP1Q9NUW8 LINC02528-202ENST00000434437 535 ntTSL 2 BASIC6.12□□□□□ -1.43
TDP1Q9NUW8 MRPS21P3-201ENST00000436696 262 ntBASIC6.12□□□□□ -1.43
TDP1Q9NUW8 AC079922.1-201ENST00000443291 359 ntBASIC6.12□□□□□ -1.43
TDP1Q9NUW8 AL049649.1-201ENST00000444792 1105 ntTSL 5 BASIC6.12□□□□□ -1.43
TDP1Q9NUW8 LINC00704-203ENST00000449712 703 ntTSL 3 BASIC6.12□□□□□ -1.43
TDP1Q9NUW8 AL096803.2-201ENST00000450032 677 ntBASIC6.12□□□□□ -1.43
TDP1Q9NUW8 Z95152.1-201ENST00000453556 656 ntBASIC6.12□□□□□ -1.43
TDP1Q9NUW8 AC092155.2-201ENST00000454675 477 ntBASIC6.12□□□□□ -1.43
TDP1Q9NUW8 RPL7L1P3-201ENST00000455249 689 ntBASIC6.12□□□□□ -1.43
TDP1Q9NUW8 AC004692.2-203ENST00000458590 497 ntTSL 4 BASIC6.12□□□□□ -1.43
TDP1Q9NUW8 CREM-220ENST00000463314 964 ntTSL 2 BASIC6.12□□□□□ -1.43
TDP1Q9NUW8 RN7SL284P-201ENST00000498823 275 ntBASIC6.12□□□□□ -1.43
TDP1Q9NUW8 MTND4LP2-201ENST00000502312 285 ntBASIC6.12□□□□□ -1.43
TDP1Q9NUW8 AC094108.1-201ENST00000502494 527 ntTSL 3 BASIC6.12□□□□□ -1.43
TDP1Q9NUW8 GNPDA2-202ENST00000507534 1050 ntTSL 2 BASIC6.12□□□□□ -1.43
TDP1Q9NUW8 MTCYBP19-201ENST00000517463 1124 ntBASIC6.12□□□□□ -1.43
TDP1Q9NUW8 LINC00535-202ENST00000517785 264 ntTSL 3 BASIC6.12□□□□□ -1.43
TDP1Q9NUW8 PCAT1-201ENST00000519319 734 ntTSL 2 BASIC6.12□□□□□ -1.43
TDP1Q9NUW8 AC025434.1-201ENST00000520705 460 ntTSL 3 BASIC6.12□□□□□ -1.43
TDP1Q9NUW8 AC064802.1-201ENST00000521523 866 ntTSL 2 BASIC6.12□□□□□ -1.43
TDP1Q9NUW8 YWHAZ-220ENST00000522819 875 ntTSL 3 BASIC6.12□□□□□ -1.43
TDP1Q9NUW8 AC018793.4-201ENST00000524542 585 ntAPPRIS P1 BASIC6.12□□□□□ -1.43
TDP1Q9NUW8 RARSP1-201ENST00000542842 1418 ntBASIC6.12□□□□□ -1.43
TDP1Q9NUW8 KLRD1-209ENST00000543420 802 ntTSL 5 BASIC6.12□□□□□ -1.43
TDP1Q9NUW8 AC090022.1-201ENST00000546569 311 ntBASIC6.12□□□□□ -1.43
TDP1Q9NUW8 AC063948.1-201ENST00000547360 379 ntTSL 5 BASIC6.12□□□□□ -1.43
TDP1Q9NUW8 TWF1-207ENST00000548315 1170 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
TDP1Q9NUW8 LINC02327-205ENST00000550990 472 ntTSL 3 BASIC6.12□□□□□ -1.43
TDP1Q9NUW8 AL049830.4-201ENST00000555149 351 ntBASIC6.12□□□□□ -1.43
TDP1Q9NUW8 AC009558.2-201ENST00000558258 396 ntTSL 2 BASIC6.12□□□□□ -1.43
TDP1Q9NUW8 AC005412.1-201ENST00000580812 1049 ntBASIC6.12□□□□□ -1.43
TDP1Q9NUW8 MIR3176-201ENST00000582210 90 ntBASIC6.12□□□□□ -1.43
TDP1Q9NUW8 FAM106CP-201ENST00000582212 507 ntBASIC6.12□□□□□ -1.43
TDP1Q9NUW8 AP005209.1-201ENST00000582531 928 ntTSL 5 BASIC6.12□□□□□ -1.43
TDP1Q9NUW8 RN7SL622P-201ENST00000585292 275 ntBASIC6.12□□□□□ -1.43
TDP1Q9NUW8 AC245036.5-201ENST00000596330 847 ntBASIC6.12□□□□□ -1.43
TDP1Q9NUW8 AC011497.2-201ENST00000600255 639 ntBASIC6.12□□□□□ -1.43
TDP1Q9NUW8 AL355578.1-201ENST00000607405 1328 ntBASIC6.12□□□□□ -1.43
TDP1Q9NUW8 TOR1AIP2-206ENST00000609928 4364 ntAPPRIS P1 TSL 2 BASIC6.12□□□□□ -1.43
TDP1Q9NUW8 AL512624.1-201ENST00000613638 469 ntBASIC6.12□□□□□ -1.43
TDP1Q9NUW8 MIR6826-201ENST00000617808 98 ntBASIC6.12□□□□□ -1.43
TDP1Q9NUW8 AC022079.1-201ENST00000621546 602 ntBASIC6.12□□□□□ -1.43
TDP1Q9NUW8 AC104985.3-201ENST00000623479 597 ntBASIC6.12□□□□□ -1.43
TDP1Q9NUW8 AC027279.4-201ENST00000624371 2072 ntBASIC6.12□□□□□ -1.43
TDP1Q9NUW8 AL691477.1-201ENST00000624398 162 ntBASIC6.12□□□□□ -1.43
TDP1Q9NUW8 CGA-206ENST00000630630 832 ntTSL 2 BASIC6.12□□□□□ -1.43
TDP1Q9NUW8 AC018793.1-201ENST00000638166 585 ntAPPRIS P1 BASIC6.12□□□□□ -1.43
TDP1Q9NUW8 AC018793.2-201ENST00000639584 585 ntAPPRIS P1 BASIC6.12□□□□□ -1.43
TDP1Q9NUW8 ATM-229ENST00000639953 587 ntTSL 5 BASIC6.12□□□□□ -1.43
TDP1Q9NUW8 AC018793.3-201ENST00000640805 585 ntAPPRIS P1 BASIC6.12□□□□□ -1.43
TDP1Q9NUW8 ANK2-201ENST00000264366 11775 ntAPPRIS ALT2 TSL 5 BASIC6.12□□□□□ -1.43
TDP1Q9NUW8 CPS1-204ENST00000451903 4770 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
TDP1Q9NUW8 PRKDC-201ENST00000314191 13509 ntAPPRIS P4 TSL 1 (best) BASIC6.12□□□□□ -1.43
TDP1Q9NUW8 METTL6-203ENST00000443029 4020 ntAPPRIS P1 TSL 5 BASIC6.12□□□□□ -1.43
TDP1Q9NUW8 ZNF337-202ENST00000376436 3613 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
TDP1Q9NUW8 LMO3-225ENST00000541295 3498 ntTSL 2 BASIC6.12□□□□□ -1.43
TDP1Q9NUW8 FAM35A-201ENST00000298784 3402 ntAPPRIS P1 TSL 2 BASIC6.12□□□□□ -1.43
TDP1Q9NUW8 DNAL1-202ENST00000553645 8404 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
TDP1Q9NUW8 LINC01378-201ENST00000422145 2516 ntTSL 3 BASIC6.11□□□□□ -1.43
TDP1Q9NUW8 FASTKD2-203ENST00000403094 2344 ntAPPRIS P1 TSL 5 BASIC6.11□□□□□ -1.43
TDP1Q9NUW8 ZNF177-202ENST00000589262 1920 ntAPPRIS ALT2 TSL 2 BASIC6.11□□□□□ -1.43
TDP1Q9NUW8 BCL2L14-213ENST00000589718 1850 ntAPPRIS P1 TSL 5 BASIC6.11□□□□□ -1.43
TDP1Q9NUW8 AL022323.4-201ENST00000623980 13120 ntBASIC6.11□□□□□ -1.43
TDP1Q9NUW8 OGT-201ENST00000373701 3310 ntAPPRIS ALT1 TSL 1 (best) BASIC6.11□□□□□ -1.43
TDP1Q9NUW8 CNTN1-204ENST00000547849 3125 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
TDP1Q9NUW8 DNAH17-201ENST00000389840 13723 ntAPPRIS P5 TSL 5 BASIC6.11□□□□□ -1.43
TDP1Q9NUW8 GBP1-201ENST00000370473 3035 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
TDP1Q9NUW8 LINC01981-201ENST00000432163 2833 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
TDP1Q9NUW8 GCNT2-201ENST00000265012 4214 ntAPPRIS P3 TSL 1 (best) BASIC6.11□□□□□ -1.43
TDP1Q9NUW8 PDCL2-201ENST00000295645 861 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
TDP1Q9NUW8 SLC16A6-201ENST00000327268 3807 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
TDP1Q9NUW8 RNA5SP105-201ENST00000391123 113 ntBASIC6.11□□□□□ -1.43
TDP1Q9NUW8 PIGP-204ENST00000399102 688 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
TDP1Q9NUW8 AC003092.2-201ENST00000411946 446 ntTSL 2 BASIC6.11□□□□□ -1.43
TDP1Q9NUW8 CLYBL-AS1-201ENST00000416009 621 ntTSL 3 BASIC6.11□□□□□ -1.43
TDP1Q9NUW8 USP9YP21-201ENST00000420603 432 ntBASIC6.11□□□□□ -1.43
TDP1Q9NUW8 AL390774.2-201ENST00000423942 788 ntTSL 3 BASIC6.11□□□□□ -1.43
TDP1Q9NUW8 AC005189.1-201ENST00000431286 310 ntBASIC6.11□□□□□ -1.43
TDP1Q9NUW8 PA2G4P6-201ENST00000438325 1197 ntBASIC6.11□□□□□ -1.43
TDP1Q9NUW8 MLIP-IT1-201ENST00000441845 643 ntTSL 2 BASIC6.11□□□□□ -1.43
TDP1Q9NUW8 VN1R25P-201ENST00000443385 738 ntBASIC6.11□□□□□ -1.43
TDP1Q9NUW8 AC023512.1-201ENST00000444513 499 ntBASIC6.11□□□□□ -1.43
TDP1Q9NUW8 Z73417.1-201ENST00000447373 778 ntBASIC6.11□□□□□ -1.43
TDP1Q9NUW8 LINC01809-201ENST00000448431 303 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
TDP1Q9NUW8 AL157371.1-201ENST00000451910 394 ntTSL 3 BASIC6.11□□□□□ -1.43
TDP1Q9NUW8 AL358612.1-201ENST00000452911 481 ntTSL 3 BASIC6.11□□□□□ -1.43
TDP1Q9NUW8 MIR4432HG-202ENST00000453476 703 ntTSL 3 BASIC6.11□□□□□ -1.43
TDP1Q9NUW8 AL589703.1-201ENST00000456032 256 ntTSL 5 BASIC6.11□□□□□ -1.43
TDP1Q9NUW8 B4GALT4-AS1-201ENST00000470790 544 ntTSL 5 BASIC6.11□□□□□ -1.43
TDP1Q9NUW8 RPS17P15-201ENST00000475609 349 ntBASIC6.11□□□□□ -1.43
TDP1Q9NUW8 AC107398.1-201ENST00000486904 505 ntBASIC6.11□□□□□ -1.43
TDP1Q9NUW8 AC069444.1-201ENST00000489428 266 ntTSL 3 BASIC6.11□□□□□ -1.43
TDP1Q9NUW8 AC026414.1-201ENST00000504046 698 ntBASIC6.11□□□□□ -1.43
TDP1Q9NUW8 AC109481.1-201ENST00000509173 282 ntBASIC6.11□□□□□ -1.43
TDP1Q9NUW8 LINC02485-202ENST00000511899 770 ntTSL 3 BASIC6.11□□□□□ -1.43
TDP1Q9NUW8 AC074087.1-201ENST00000512059 724 ntBASIC6.11□□□□□ -1.43
TDP1Q9NUW8 ZCCHC10-210ENST00000513848 876 ntAPPRIS ALT2 TSL 2 BASIC6.11□□□□□ -1.43
TDP1Q9NUW8 ATP5LP3-201ENST00000514223 304 ntBASIC6.11□□□□□ -1.43
TDP1Q9NUW8 AC096577.1-202ENST00000515649 448 ntTSL 3 BASIC6.11□□□□□ -1.43
Retrieved 100 of 98,524 protein–RNA pairs in 86.9 ms