Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 IYD-202ENST00000344419 8742 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
CCDC140Q96MF4 PRIM2-207ENST00000615550 2308 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
CCDC140Q96MF4 PIK3CB-208ENST00000477593 4658 ntAPPRIS P1 TSL 5 BASIC5.64□□□□□ -1.51
CCDC140Q96MF4 PRDM2-201ENST00000235372 7957 ntAPPRIS P4 TSL 1 (best) BASIC5.64□□□□□ -1.51
CCDC140Q96MF4 PMCHL1-201ENST00000418902 1917 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
CCDC140Q96MF4 AC096921.2-201ENST00000561507 1916 ntBASIC5.64□□□□□ -1.51
CCDC140Q96MF4 AC121758.1-201ENST00000557452 3942 ntTSL 2 BASIC5.64□□□□□ -1.51
CCDC140Q96MF4 SLC2A3P2-201ENST00000331747 1480 ntBASIC5.64□□□□□ -1.51
CCDC140Q96MF4 GSDMB-202ENST00000360317 1468 ntAPPRIS ALT2 TSL 1 (best) BASIC5.64□□□□□ -1.51
CCDC140Q96MF4 SOD2-211ENST00000538183 14266 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
CCDC140Q96MF4 MFSD8-219ENST00000641228 2559 ntBASIC5.63□□□□□ -1.51
CCDC140Q96MF4 CDH12-201ENST00000382254 4164 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
CCDC140Q96MF4 RSU1P2-203ENST00000448600 1582 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
CCDC140Q96MF4 AC068490.1-202ENST00000637384 3185 ntTSL 5 BASIC5.63□□□□□ -1.51
CCDC140Q96MF4 RPL14-201ENST00000338970 7072 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
CCDC140Q96MF4 GOSR2-221ENST00000638892 3808 ntTSL 5 BASIC5.63□□□□□ -1.51
CCDC140Q96MF4 KCNJ1-203ENST00000392664 1674 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
CCDC140Q96MF4 NOX1-201ENST00000217885 1734 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
CCDC140Q96MF4 USP9YP4-201ENST00000424401 1745 ntBASIC5.63□□□□□ -1.51
CCDC140Q96MF4 KIF2A-203ENST00000407818 2315 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
CCDC140Q96MF4 ALS2CR12-201ENST00000286190 1769 ntAPPRIS P3 TSL 1 (best) BASIC5.63□□□□□ -1.51
CCDC140Q96MF4 MAPK10-298ENST00000641297 3040 ntAPPRIS P2 BASIC5.63□□□□□ -1.51
CCDC140Q96MF4 CYB5B-201ENST00000307892 4286 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
CCDC140Q96MF4 SENP8-201ENST00000340912 4281 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
CCDC140Q96MF4 LIN7A-204ENST00000552864 6112 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
CCDC140Q96MF4 OR5F1-201ENST00000278409 945 ntAPPRIS P1 BASIC5.63□□□□□ -1.51
CCDC140Q96MF4 RNU6-289P-201ENST00000364093 107 ntBASIC5.63□□□□□ -1.51
CCDC140Q96MF4 RAET1G-201ENST00000367360 1107 ntAPPRIS P2 TSL 1 (best) BASIC5.63□□□□□ -1.51
CCDC140Q96MF4 FGFR2-213ENST00000369061 3803 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
CCDC140Q96MF4 FAM204BP-201ENST00000369171 701 ntBASIC5.63□□□□□ -1.51
CCDC140Q96MF4 NFIB-202ENST00000380924 840 ntTSL 5 BASIC5.63□□□□□ -1.51
CCDC140Q96MF4 MANSC4-201ENST00000381273 1023 ntAPPRIS P1 TSL 5 BASIC5.63□□□□□ -1.51
CCDC140Q96MF4 Y_RNA.390-201ENST00000383932 102 ntBASIC5.63□□□□□ -1.51
CCDC140Q96MF4 RNU6-533P-201ENST00000384144 107 ntBASIC5.63□□□□□ -1.51
CCDC140Q96MF4 SNORA70.8-201ENST00000384231 136 ntBASIC5.63□□□□□ -1.51
CCDC140Q96MF4 U3.23-201ENST00000391132 200 ntBASIC5.63□□□□□ -1.51
CCDC140Q96MF4 NHP2P2-201ENST00000396362 460 ntBASIC5.63□□□□□ -1.51
CCDC140Q96MF4 UGT1A6-203ENST00000406651 785 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
CCDC140Q96MF4 AC012462.2-201ENST00000414756 391 ntTSL 3 BASIC5.63□□□□□ -1.51
CCDC140Q96MF4 TTTY17A-201ENST00000416110 166 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
CCDC140Q96MF4 AL672277.1-201ENST00000420865 588 ntTSL 2 BASIC5.63□□□□□ -1.51
CCDC140Q96MF4 TTTY17C-201ENST00000421387 166 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
CCDC140Q96MF4 AL132796.1-201ENST00000421617 479 ntTSL 3 BASIC5.63□□□□□ -1.51
CCDC140Q96MF4 EIF1AX-AS1-201ENST00000424026 378 ntTSL 5 BASIC5.63□□□□□ -1.51
CCDC140Q96MF4 AL162414.1-201ENST00000426204 744 ntTSL 3 BASIC5.63□□□□□ -1.51
CCDC140Q96MF4 AL451042.1-201ENST00000426353 544 ntTSL 3 BASIC5.63□□□□□ -1.51
CCDC140Q96MF4 AC114808.2-201ENST00000428335 536 ntTSL 4 BASIC5.63□□□□□ -1.51
CCDC140Q96MF4 IGLV3-4-201ENST00000432300 244 ntBASIC5.63□□□□□ -1.51
CCDC140Q96MF4 YWHAZP8-201ENST00000436935 731 ntBASIC5.63□□□□□ -1.51
CCDC140Q96MF4 PHBP4-201ENST00000437447 837 ntBASIC5.63□□□□□ -1.51
CCDC140Q96MF4 TTTY17B-201ENST00000441906 166 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
CCDC140Q96MF4 FHP1-201ENST00000442741 703 ntBASIC5.63□□□□□ -1.51
CCDC140Q96MF4 AC044784.2-201ENST00000447297 366 ntTSL 3 BASIC5.63□□□□□ -1.51
CCDC140Q96MF4 WASF1P1-201ENST00000447560 1131 ntBASIC5.63□□□□□ -1.51
CCDC140Q96MF4 PMS2P11-201ENST00000451831 574 ntBASIC5.63□□□□□ -1.51
CCDC140Q96MF4 AC009411.2-201ENST00000458359 539 ntTSL 4 BASIC5.63□□□□□ -1.51
CCDC140Q96MF4 RNU6-1218P-201ENST00000458990 108 ntBASIC5.63□□□□□ -1.51
CCDC140Q96MF4 RPL31P58-201ENST00000469001 379 ntBASIC5.63□□□□□ -1.51
CCDC140Q96MF4 RN7SL654P-201ENST00000479178 292 ntBASIC5.63□□□□□ -1.51
CCDC140Q96MF4 PDPN-205ENST00000487038 607 ntTSL 2 BASIC5.63□□□□□ -1.51
CCDC140Q96MF4 AC008967.1-201ENST00000504843 163 ntBASIC5.63□□□□□ -1.51
CCDC140Q96MF4 ROPN1B-207ENST00000511082 782 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
CCDC140Q96MF4 OR52H2P-201ENST00000514607 902 ntBASIC5.63□□□□□ -1.51
CCDC140Q96MF4 IGLV1-62-201ENST00000518003 441 ntBASIC5.63□□□□□ -1.51
CCDC140Q96MF4 AC010609.1-201ENST00000519375 569 ntTSL 3 BASIC5.63□□□□□ -1.51
CCDC140Q96MF4 AP000790.1-201ENST00000528891 737 ntBASIC5.63□□□□□ -1.51
CCDC140Q96MF4 AC018523.1-201ENST00000534211 512 ntBASIC5.63□□□□□ -1.51
CCDC140Q96MF4 AC011595.1-201ENST00000548901 753 ntTSL 3 BASIC5.63□□□□□ -1.51
CCDC140Q96MF4 AC068643.2-202ENST00000552759 622 ntTSL 3 BASIC5.63□□□□□ -1.51
CCDC140Q96MF4 AL049869.4-201ENST00000555669 178 ntBASIC5.63□□□□□ -1.51
CCDC140Q96MF4 AC013652.2-202ENST00000558948 910 ntTSL 3 BASIC5.63□□□□□ -1.51
CCDC140Q96MF4 HMGN2P47-201ENST00000559378 272 ntBASIC5.63□□□□□ -1.51
CCDC140Q96MF4 FRG2IP-201ENST00000563581 781 ntBASIC5.63□□□□□ -1.51
CCDC140Q96MF4 EIF5A2P1-201ENST00000564027 460 ntBASIC5.63□□□□□ -1.51
CCDC140Q96MF4 AC090371.2-203ENST00000578782 473 ntTSL 3 BASIC5.63□□□□□ -1.51
CCDC140Q96MF4 STARD6-204ENST00000584040 660 ntTSL 3 BASIC5.63□□□□□ -1.51
CCDC140Q96MF4 AC011477.2-201ENST00000590697 921 ntTSL 2 BASIC5.63□□□□□ -1.51
CCDC140Q96MF4 AC022916.3-201ENST00000592961 742 ntBASIC5.63□□□□□ -1.51
CCDC140Q96MF4 AC009955.2-201ENST00000597288 542 ntBASIC5.63□□□□□ -1.51
CCDC140Q96MF4 PRR13P3-201ENST00000603578 376 ntBASIC5.63□□□□□ -1.51
CCDC140Q96MF4 AC233280.2-201ENST00000603917 1070 ntBASIC5.63□□□□□ -1.51
CCDC140Q96MF4 AC112187.2-201ENST00000604345 283 ntBASIC5.63□□□□□ -1.51
CCDC140Q96MF4 AP001554.1-201ENST00000604533 376 ntBASIC5.63□□□□□ -1.51
CCDC140Q96MF4 AC012511.1-201ENST00000608140 449 ntBASIC5.63□□□□□ -1.51
CCDC140Q96MF4 AC108479.2-201ENST00000617314 601 ntBASIC5.63□□□□□ -1.51
CCDC140Q96MF4 MALAT1-212ENST00000618132 725 ntTSL 2 BASIC5.63□□□□□ -1.51
CCDC140Q96MF4 AC072046.2-201ENST00000618366 268 ntBASIC5.63□□□□□ -1.51
CCDC140Q96MF4 AL121985.2-201ENST00000621192 555 ntBASIC5.63□□□□□ -1.51
CCDC140Q96MF4 PACRG-211ENST00000621363 360 ntTSL 5 BASIC5.63□□□□□ -1.51
CCDC140Q96MF4 AC244205.1-201ENST00000624935 705 ntTSL 2 BASIC5.63□□□□□ -1.51
CCDC140Q96MF4 AC005618.4-201ENST00000625053 554 ntBASIC5.63□□□□□ -1.51
CCDC140Q96MF4 AC021079.1-201ENST00000625268 907 ntTSL 3 BASIC5.63□□□□□ -1.51
CCDC140Q96MF4 AL513321.2-202ENST00000634479 921 ntTSL 5 BASIC5.63□□□□□ -1.51
CCDC140Q96MF4 ZNF382-210ENST00000639288 834 ntTSL 5 BASIC5.63□□□□□ -1.51
CCDC140Q96MF4 LINC00507-201ENST00000540882 1935 ntTSL 5 BASIC5.63□□□□□ -1.51
CCDC140Q96MF4 DNM1L-202ENST00000358214 3229 ntTSL 5 BASIC5.63□□□□□ -1.51
CCDC140Q96MF4 ZNF438-208ENST00000538351 3284 ntAPPRIS ALT2 TSL 2 BASIC5.63□□□□□ -1.51
CCDC140Q96MF4 PZP-201ENST00000261336 4610 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
CCDC140Q96MF4 SCIN-209ENST00000519209 2660 ntTSL 2 BASIC5.63□□□□□ -1.51
CCDC140Q96MF4 OPALIN-205ENST00000536387 3392 ntTSL 3 BASIC5.63□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 76.1 ms