Protein–RNA interactions for Protein: Q969F9

HPS3, Hermansky-Pudlak syndrome 3 protein, humanhuman

Predictions only

Length 1,004 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HPS3Q969F9 MEPE-202ENST00000395102 2123 ntAPPRIS ALT2 TSL 5 BASIC6.38□□□□□ -1.39
HPS3Q969F9 TTI1-203ENST00000449821 3791 ntAPPRIS P1 TSL 2 BASIC6.38□□□□□ -1.39
HPS3Q969F9 MAK-204ENST00000536370 3767 ntTSL 1 (best) BASIC6.38□□□□□ -1.39
HPS3Q969F9 AC007342.7-201ENST00000624610 2337 ntBASIC6.38□□□□□ -1.39
HPS3Q969F9 NBPF26-202ENST00000611287 2701 ntTSL 5 BASIC6.38□□□□□ -1.39
HPS3Q969F9 SCAPER-207ENST00000563290 5028 ntAPPRIS P1 TSL 5 BASIC6.38□□□□□ -1.39
HPS3Q969F9 CFAP57-204ENST00000528956 3037 ntTSL 2 BASIC6.38□□□□□ -1.39
HPS3Q969F9 AP005432.1-201ENST00000580891 3485 ntBASIC6.38□□□□□ -1.39
HPS3Q969F9 OR11H1-201ENST00000252835 982 ntAPPRIS P1 BASIC6.38□□□□□ -1.39
HPS3Q969F9 RN7SKP28-201ENST00000364770 305 ntBASIC6.38□□□□□ -1.39
HPS3Q969F9 FIG4-202ENST00000368941 791 ntTSL 3 BASIC6.38□□□□□ -1.39
HPS3Q969F9 TRAV10-201ENST00000390432 379 ntAPPRIS P1 BASIC6.38□□□□□ -1.39
HPS3Q969F9 AP002784.2-201ENST00000397300 549 ntBASIC6.38□□□□□ -1.39
HPS3Q969F9 UBE2V1P11-201ENST00000411559 285 ntBASIC6.38□□□□□ -1.39
HPS3Q969F9 XKRYP4-201ENST00000414395 483 ntBASIC6.38□□□□□ -1.39
HPS3Q969F9 AC008173.1-201ENST00000418901 264 ntBASIC6.38□□□□□ -1.39
HPS3Q969F9 RPA2P2-201ENST00000419698 796 ntBASIC6.38□□□□□ -1.39
HPS3Q969F9 AC004882.2-201ENST00000420180 244 ntTSL 5 BASIC6.38□□□□□ -1.39
HPS3Q969F9 AL162430.2-201ENST00000422306 435 ntTSL 3 BASIC6.38□□□□□ -1.39
HPS3Q969F9 AC241520.1-201ENST00000422654 1099 ntBASIC6.38□□□□□ -1.39
HPS3Q969F9 OR5K2-201ENST00000427338 1060 ntAPPRIS P1 BASIC6.38□□□□□ -1.39
HPS3Q969F9 AC013476.1-201ENST00000446709 537 ntTSL 4 BASIC6.38□□□□□ -1.39
HPS3Q969F9 XKRYP5-201ENST00000449659 483 ntBASIC6.38□□□□□ -1.39
HPS3Q969F9 RPS26P41-201ENST00000450370 284 ntBASIC6.38□□□□□ -1.39
HPS3Q969F9 AC069277.2-201ENST00000454211 432 ntBASIC6.38□□□□□ -1.39
HPS3Q969F9 RNU1-88P-201ENST00000459274 128 ntBASIC6.38□□□□□ -1.39
HPS3Q969F9 CBX1P5-201ENST00000475330 559 ntBASIC6.38□□□□□ -1.39
HPS3Q969F9 AC104982.1-201ENST00000478775 574 ntBASIC6.38□□□□□ -1.39
HPS3Q969F9 NUDT6-203ENST00000502270 678 ntTSL 5 BASIC6.38□□□□□ -1.39
HPS3Q969F9 SUMO2P4-201ENST00000504193 276 ntBASIC6.38□□□□□ -1.39
HPS3Q969F9 AC012055.1-201ENST00000511346 1144 ntTSL 3 BASIC6.38□□□□□ -1.39
HPS3Q969F9 AC108120.2-201ENST00000512973 294 ntBASIC6.38□□□□□ -1.39
HPS3Q969F9 RFESD-208ENST00000513950 464 ntTSL 5 BASIC6.38□□□□□ -1.39
HPS3Q969F9 NSMCE2-202ENST00000517315 996 ntTSL 3 BASIC6.38□□□□□ -1.39
HPS3Q969F9 LINC02267-202ENST00000522173 799 ntTSL 3 BASIC6.38□□□□□ -1.39
HPS3Q969F9 AP000424.2-201ENST00000523784 233 ntTSL 3 BASIC6.38□□□□□ -1.39
HPS3Q969F9 CIR1P1-201ENST00000524055 1133 ntBASIC6.38□□□□□ -1.39
HPS3Q969F9 KLRK1-204ENST00000540818 951 ntAPPRIS P1 TSL 1 (best) BASIC6.38□□□□□ -1.39
HPS3Q969F9 TRDN-204ENST00000542443 1294 ntTSL 1 (best) BASIC6.38□□□□□ -1.39
HPS3Q969F9 ZKSCAN7P1-201ENST00000543668 673 ntBASIC6.38□□□□□ -1.39
HPS3Q969F9 PARPBP-212ENST00000543784 992 ntTSL 2 BASIC6.38□□□□□ -1.39
HPS3Q969F9 TNFSF11-205ENST00000544862 818 ntTSL 1 (best) BASIC6.38□□□□□ -1.39
HPS3Q969F9 AC025419.1-207ENST00000546198 1072 ntTSL 3 BASIC6.38□□□□□ -1.39
HPS3Q969F9 LINC00929-203ENST00000556213 713 ntTSL 2 BASIC6.38□□□□□ -1.39
HPS3Q969F9 OR11H2-201ENST00000556246 948 ntAPPRIS P1 BASIC6.38□□□□□ -1.39
HPS3Q969F9 AC018558.1-201ENST00000562591 459 ntTSL 1 (best) BASIC6.38□□□□□ -1.39
HPS3Q969F9 AC009120.4-201ENST00000564455 513 ntTSL 5 BASIC6.38□□□□□ -1.39
HPS3Q969F9 AC087501.3-201ENST00000576477 513 ntTSL 5 BASIC6.38□□□□□ -1.39
HPS3Q969F9 AC130371.1-201ENST00000577023 230 ntTSL 5 BASIC6.38□□□□□ -1.39
HPS3Q969F9 AC060780.2-201ENST00000589047 198 ntBASIC6.38□□□□□ -1.39
HPS3Q969F9 SNHG8-202ENST00000602483 309 ntTSL 3 BASIC6.38□□□□□ -1.39
HPS3Q969F9 AC025175.1-201ENST00000606482 759 ntBASIC6.38□□□□□ -1.39
HPS3Q969F9 AL138900.3-201ENST00000607010 629 ntTSL 2 BASIC6.38□□□□□ -1.39
HPS3Q969F9 AC018754.1-201ENST00000607486 925 ntBASIC6.38□□□□□ -1.39
HPS3Q969F9 AC112503.1-201ENST00000608436 391 ntBASIC6.38□□□□□ -1.39
HPS3Q969F9 OR8G7P-201ENST00000616658 848 ntBASIC6.38□□□□□ -1.39
HPS3Q969F9 REV3L-214ENST00000619481 969 ntTSL 5 BASIC6.38□□□□□ -1.39
HPS3Q969F9 SATB1-AS1-259ENST00000629477 853 ntTSL 5 BASIC6.38□□□□□ -1.39
HPS3Q969F9 OR4A15-202ENST00000641526 945 ntAPPRIS P1 BASIC6.38□□□□□ -1.39
HPS3Q969F9 MSL3P1-202ENST00000440028 1468 ntBASIC6.38□□□□□ -1.39
HPS3Q969F9 GPR87-201ENST00000260843 1608 ntAPPRIS P1 TSL 1 (best) BASIC6.38□□□□□ -1.39
HPS3Q969F9 CALN1-204ENST00000405452 8571 ntTSL 2 BASIC6.38□□□□□ -1.39
HPS3Q969F9 SPAM1-201ENST00000223028 2007 ntAPPRIS ALT2 TSL 5 BASIC6.38□□□□□ -1.39
HPS3Q969F9 ZNF571-202ENST00000358744 2049 ntAPPRIS P1 TSL 2 BASIC6.38□□□□□ -1.39
HPS3Q969F9 AC087516.1-201ENST00000561236 2428 ntBASIC6.38□□□□□ -1.39
HPS3Q969F9 GTF2IRD2P1-202ENST00000618962 3055 ntTSL 1 (best) BASIC6.38□□□□□ -1.39
HPS3Q969F9 TOX3-202ENST00000407228 3124 ntAPPRIS ALT2 TSL 2 BASIC6.38□□□□□ -1.39
HPS3Q969F9 LIMA1-215ENST00000552823 3254 ntAPPRIS ALT2 TSL 2 BASIC6.38□□□□□ -1.39
HPS3Q969F9 ADGRF1-203ENST00000371253 5468 ntAPPRIS P1 TSL 1 (best) BASIC6.38□□□□□ -1.39
HPS3Q969F9 PTPRD-214ENST00000540109 6210 ntAPPRIS P1 TSL 5 BASIC6.38□□□□□ -1.39
HPS3Q969F9 MMRN1-201ENST00000264790 4967 ntAPPRIS P1 TSL 1 (best) BASIC6.37□□□□□ -1.39
HPS3Q969F9 DDAH1-204ENST00000535924 3909 ntTSL 1 (best) BASIC6.37□□□□□ -1.39
HPS3Q969F9 IKZF2-201ENST00000342002 3747 ntAPPRIS ALT2 TSL 1 (best) BASIC6.37□□□□□ -1.39
HPS3Q969F9 IFIT2-203ENST00000638108 3703 ntAPPRIS P2 TSL 5 BASIC6.37□□□□□ -1.39
HPS3Q969F9 AC004076.2-201ENST00000620532 3323 ntBASIC6.37□□□□□ -1.39
HPS3Q969F9 NDRG3-201ENST00000349004 2964 ntAPPRIS P4 TSL 1 (best) BASIC6.37□□□□□ -1.39
HPS3Q969F9 SCN1A-217ENST00000637988 8562 ntAPPRIS P3 TSL 5 BASIC6.37□□□□□ -1.39
HPS3Q969F9 AC068870.1-201ENST00000563737 2455 ntBASIC6.37□□□□□ -1.39
HPS3Q969F9 AL159987.1-201ENST00000347911 293 ntBASIC6.37□□□□□ -1.39
HPS3Q969F9 RPS24-201ENST00000360830 514 ntAPPRIS ALT1 TSL 1 (best) BASIC6.37□□□□□ -1.39
HPS3Q969F9 RPL39-201ENST00000361575 401 ntAPPRIS P1 TSL 1 (best) BASIC6.37□□□□□ -1.39
HPS3Q969F9 KLRC2-201ENST00000381901 1211 ntAPPRIS ALT2 TSL 5 BASIC6.37□□□□□ -1.39
HPS3Q969F9 KLRC2-202ENST00000381902 1221 ntAPPRIS P2 TSL 1 (best) BASIC6.37□□□□□ -1.39
HPS3Q969F9 UBE2V1P9-201ENST00000414760 368 ntBASIC6.37□□□□□ -1.39
HPS3Q969F9 AL645465.1-201ENST00000417765 642 ntTSL 3 BASIC6.37□□□□□ -1.39
HPS3Q969F9 AP000221.1-201ENST00000419694 1046 ntTSL 3 BASIC6.37□□□□□ -1.39
HPS3Q969F9 AL391069.1-201ENST00000422153 358 ntTSL 3 BASIC6.37□□□□□ -1.39
HPS3Q969F9 MTCO2P17-201ENST00000424336 677 ntBASIC6.37□□□□□ -1.39
HPS3Q969F9 AC113331.1-201ENST00000428160 869 ntTSL 2 BASIC6.37□□□□□ -1.39
HPS3Q969F9 AC093716.1-201ENST00000435923 377 ntBASIC6.37□□□□□ -1.39
HPS3Q969F9 AC004854.1-201ENST00000440356 349 ntBASIC6.37□□□□□ -1.39
HPS3Q969F9 CYCSP51-201ENST00000443545 318 ntBASIC6.37□□□□□ -1.39
HPS3Q969F9 MOB4-207ENST00000448447 1021 ntTSL 2 BASIC6.37□□□□□ -1.39
HPS3Q969F9 OFD1P3Y-201ENST00000453312 783 ntBASIC6.37□□□□□ -1.39
HPS3Q969F9 DUXAP8-207ENST00000456786 622 ntBASIC6.37□□□□□ -1.39
HPS3Q969F9 AF129075.1-201ENST00000457162 794 ntTSL 3 BASIC6.37□□□□□ -1.39
HPS3Q969F9 UBFD1P1-201ENST00000473259 814 ntBASIC6.37□□□□□ -1.39
HPS3Q969F9 SNRPCP3-201ENST00000474888 476 ntBASIC6.37□□□□□ -1.39
HPS3Q969F9 CFHR2-203ENST00000476712 1020 ntAPPRIS ALT2 TSL 3 BASIC6.37□□□□□ -1.39
HPS3Q969F9 AC009120.1-201ENST00000493458 473 ntBASIC6.37□□□□□ -1.39
Retrieved 100 of 98,524 protein–RNA pairs in 84.9 ms