Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 AL139294.1-201ENST00000435739 512 ntTSL 2 BASIC4.87□□□□□ -1.63
PDLIM3Q53GG5 AC099063.1-201ENST00000437128 324 ntTSL 5 BASIC4.87□□□□□ -1.63
PDLIM3Q53GG5 AL157884.3-201ENST00000448273 1184 ntBASIC4.87□□□□□ -1.63
PDLIM3Q53GG5 AL445665.1-202ENST00000452436 324 ntBASIC4.87□□□□□ -1.63
PDLIM3Q53GG5 AL133244.1-201ENST00000456007 258 ntBASIC4.87□□□□□ -1.63
PDLIM3Q53GG5 AC108729.2-201ENST00000476543 840 ntBASIC4.87□□□□□ -1.63
PDLIM3Q53GG5 AC245041.2-201ENST00000479781 376 ntTSL 5 BASIC4.87□□□□□ -1.63
PDLIM3Q53GG5 AC087071.2-201ENST00000483283 575 ntTSL 4 BASIC4.87□□□□□ -1.63
PDLIM3Q53GG5 AC055758.1-201ENST00000494509 569 ntTSL 3 BASIC4.87□□□□□ -1.63
PDLIM3Q53GG5 GIN1-203ENST00000508629 1040 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
PDLIM3Q53GG5 AC112206.4-201ENST00000515142 405 ntBASIC4.87□□□□□ -1.63
PDLIM3Q53GG5 Y_RNA.667-201ENST00000516212 107 ntBASIC4.87□□□□□ -1.63
PDLIM3Q53GG5 RNA5SP434-201ENST00000516647 121 ntBASIC4.87□□□□□ -1.63
PDLIM3Q53GG5 AC012103.1-201ENST00000522281 780 ntTSL 3 BASIC4.87□□□□□ -1.63
PDLIM3Q53GG5 AP000424.2-201ENST00000523784 233 ntTSL 3 BASIC4.87□□□□□ -1.63
PDLIM3Q53GG5 AC103855.3-201ENST00000528445 606 ntTSL 5 BASIC4.87□□□□□ -1.63
PDLIM3Q53GG5 AP003049.1-201ENST00000529418 457 ntBASIC4.87□□□□□ -1.63
PDLIM3Q53GG5 OR10G5P-201ENST00000532733 358 ntBASIC4.87□□□□□ -1.63
PDLIM3Q53GG5 AC036111.2-201ENST00000533247 901 ntBASIC4.87□□□□□ -1.63
PDLIM3Q53GG5 LINC02441-201ENST00000543651 552 ntTSL 4 BASIC4.87□□□□□ -1.63
PDLIM3Q53GG5 RNASE9-205ENST00000553706 1172 ntAPPRIS ALT2 TSL 1 (best) BASIC4.87□□□□□ -1.63
PDLIM3Q53GG5 INO80-AS1-201ENST00000558967 312 ntTSL 5 BASIC4.87□□□□□ -1.63
PDLIM3Q53GG5 LCMT1-AS1-204ENST00000569920 474 ntTSL 2 BASIC4.87□□□□□ -1.63
PDLIM3Q53GG5 FAM106CP-201ENST00000582212 507 ntBASIC4.87□□□□□ -1.63
PDLIM3Q53GG5 AC060780.2-201ENST00000589047 198 ntBASIC4.87□□□□□ -1.63
PDLIM3Q53GG5 TEX41-218ENST00000596540 882 ntTSL 5 BASIC4.87□□□□□ -1.63
PDLIM3Q53GG5 AL137072.1-201ENST00000603444 466 ntBASIC4.87□□□□□ -1.63
PDLIM3Q53GG5 SMAGP-208ENST00000605627 577 ntTSL 5 BASIC4.87□□□□□ -1.63
PDLIM3Q53GG5 AC245014.3-201ENST00000618589 347 ntBASIC4.87□□□□□ -1.63
PDLIM3Q53GG5 5S_rRNA.28-201ENST00000638107 119 ntBASIC4.87□□□□□ -1.63
PDLIM3Q53GG5 SAMMSON-227ENST00000642114 1199 ntBASIC4.87□□□□□ -1.63
PDLIM3Q53GG5 AC130304.1-201ENST00000622942 2385 ntBASIC4.87□□□□□ -1.63
PDLIM3Q53GG5 AC097512.1-201ENST00000511453 1309 ntTSL 3 BASIC4.87□□□□□ -1.63
PDLIM3Q53GG5 GART-205ENST00000381839 3469 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
PDLIM3Q53GG5 ZNF347-201ENST00000334197 7960 ntAPPRIS P3 TSL 1 (best) BASIC4.87□□□□□ -1.63
PDLIM3Q53GG5 VEPH1-202ENST00000392832 3044 ntAPPRIS P1 TSL 2 BASIC4.87□□□□□ -1.63
PDLIM3Q53GG5 ATF2-212ENST00000426833 4132 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
PDLIM3Q53GG5 AC026951.1-201ENST00000559530 2459 ntBASIC4.87□□□□□ -1.63
PDLIM3Q53GG5 AL512283.1-201ENST00000606756 1384 ntBASIC4.87□□□□□ -1.63
PDLIM3Q53GG5 TNRC6B-201ENST00000301923 15958 ntAPPRIS P3 TSL 5 BASIC4.87□□□□□ -1.63
PDLIM3Q53GG5 DCN-204ENST00000425043 1438 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
PDLIM3Q53GG5 CACNB4-221ENST00000636130 7748 ntTSL 5 BASIC4.87□□□□□ -1.63
PDLIM3Q53GG5 RAB3GAP1-207ENST00000539493 3161 ntTSL 5 BASIC4.87□□□□□ -1.63
PDLIM3Q53GG5 SLCO1A2-212ENST00000458504 2008 ntTSL 2 BASIC4.87□□□□□ -1.63
PDLIM3Q53GG5 LINC01478-201ENST00000587877 2068 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
PDLIM3Q53GG5 ANKRD46-204ENST00000519597 2779 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
PDLIM3Q53GG5 ROR1-AS1-202ENST00000424995 2189 ntTSL 2 BASIC4.87□□□□□ -1.63
PDLIM3Q53GG5 OR4N5-202ENST00000641086 2187 ntAPPRIS P1 BASIC4.87□□□□□ -1.63
PDLIM3Q53GG5 SOCS5P3-201ENST00000425115 1576 ntBASIC4.87□□□□□ -1.63
PDLIM3Q53GG5 MFSD4BP1-201ENST00000513330 1552 ntBASIC4.87□□□□□ -1.63
PDLIM3Q53GG5 CCR2-202ENST00000400888 2232 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
PDLIM3Q53GG5 TGIF1-208ENST00000472042 2214 ntTSL 2 BASIC4.87□□□□□ -1.63
PDLIM3Q53GG5 AC110792.3-201ENST00000595906 1614 ntBASIC4.86□□□□□ -1.63
PDLIM3Q53GG5 STEAP2-205ENST00000394629 2261 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
PDLIM3Q53GG5 SDHC-202ENST00000367975 13566 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
PDLIM3Q53GG5 AC087516.1-201ENST00000561236 2428 ntBASIC4.86□□□□□ -1.63
PDLIM3Q53GG5 OR5A2-203ENST00000641673 9444 ntAPPRIS P1 BASIC4.86□□□□□ -1.63
PDLIM3Q53GG5 PIH1D3-203ENST00000535523 1926 ntAPPRIS P1 TSL 5 BASIC4.86□□□□□ -1.63
PDLIM3Q53GG5 FAT3-201ENST00000409404 19030 ntAPPRIS P1 TSL 5 BASIC4.86□□□□□ -1.63
PDLIM3Q53GG5 KCTD16-201ENST00000507359 13950 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
PDLIM3Q53GG5 FCER1G-201ENST00000289902 591 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
PDLIM3Q53GG5 XAGE5-201ENST00000351072 478 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
PDLIM3Q53GG5 CCL20-201ENST00000358813 800 ntAPPRIS P3 TSL 1 (best) BASIC4.86□□□□□ -1.63
PDLIM3Q53GG5 SMARCA2-207ENST00000382186 955 ntTSL 3 BASIC4.86□□□□□ -1.63
PDLIM3Q53GG5 RPL10P10-201ENST00000403509 664 ntBASIC4.86□□□□□ -1.63
PDLIM3Q53GG5 AC073257.2-201ENST00000413991 528 ntTSL 3 BASIC4.86□□□□□ -1.63
PDLIM3Q53GG5 RPS15AP30-201ENST00000420976 390 ntBASIC4.86□□□□□ -1.63
PDLIM3Q53GG5 AC008164.1-201ENST00000423925 564 ntTSL 4 BASIC4.86□□□□□ -1.63
PDLIM3Q53GG5 AC023141.6-201ENST00000429418 337 ntBASIC4.86□□□□□ -1.63
PDLIM3Q53GG5 FABP7P2-201ENST00000429946 379 ntBASIC4.86□□□□□ -1.63
PDLIM3Q53GG5 AC023481.1-201ENST00000435368 938 ntTSL 3 BASIC4.86□□□□□ -1.63
PDLIM3Q53GG5 AL772161.1-201ENST00000439130 476 ntBASIC4.86□□□□□ -1.63
PDLIM3Q53GG5 AL354994.1-201ENST00000445967 194 ntTSL 5 BASIC4.86□□□□□ -1.63
PDLIM3Q53GG5 CNTN4-AS2-201ENST00000447256 426 ntTSL 3 BASIC4.86□□□□□ -1.63
PDLIM3Q53GG5 AL731574.1-201ENST00000447757 456 ntTSL 5 BASIC4.86□□□□□ -1.63
PDLIM3Q53GG5 AL591623.2-201ENST00000449978 222 ntBASIC4.86□□□□□ -1.63
PDLIM3Q53GG5 AP006222.1-205ENST00000450734 457 ntBASIC4.86□□□□□ -1.63
PDLIM3Q53GG5 HIGD1AP16-201ENST00000450986 258 ntBASIC4.86□□□□□ -1.63
PDLIM3Q53GG5 RSU1P1-201ENST00000453416 441 ntBASIC4.86□□□□□ -1.63
PDLIM3Q53GG5 DNAJB5P1-201ENST00000454004 806 ntBASIC4.86□□□□□ -1.63
PDLIM3Q53GG5 PPIAP7-201ENST00000454070 489 ntBASIC4.86□□□□□ -1.63
PDLIM3Q53GG5 CST12P-201ENST00000457644 362 ntBASIC4.86□□□□□ -1.63
PDLIM3Q53GG5 AC007000.3-201ENST00000459742 617 ntTSL 3 BASIC4.86□□□□□ -1.63
PDLIM3Q53GG5 EIF2S2P4-201ENST00000461070 984 ntBASIC4.86□□□□□ -1.63
PDLIM3Q53GG5 AC106895.1-202ENST00000502956 777 ntTSL 3 BASIC4.86□□□□□ -1.63
PDLIM3Q53GG5 AL158068.1-201ENST00000506116 616 ntBASIC4.86□□□□□ -1.63
PDLIM3Q53GG5 AC090833.1-202ENST00000511073 781 ntTSL 3 BASIC4.86□□□□□ -1.63
PDLIM3Q53GG5 AC114781.3-201ENST00000512083 142 ntBASIC4.86□□□□□ -1.63
PDLIM3Q53GG5 LINC02429-202ENST00000513836 694 ntTSL 3 BASIC4.86□□□□□ -1.63
PDLIM3Q53GG5 AC097486.1-201ENST00000515331 210 ntBASIC4.86□□□□□ -1.63
PDLIM3Q53GG5 RNA5SP228-201ENST00000516232 133 ntBASIC4.86□□□□□ -1.63
PDLIM3Q53GG5 AL355432.1-201ENST00000522960 564 ntTSL 3 BASIC4.86□□□□□ -1.63
PDLIM3Q53GG5 AP000620.1-201ENST00000527147 504 ntBASIC4.86□□□□□ -1.63
PDLIM3Q53GG5 AP000873.2-205ENST00000529031 435 ntTSL 2 BASIC4.86□□□□□ -1.63
PDLIM3Q53GG5 CLEC2B-202ENST00000538152 745 ntTSL 2 BASIC4.86□□□□□ -1.63
PDLIM3Q53GG5 AL121594.2-201ENST00000541658 472 ntBASIC4.86□□□□□ -1.63
PDLIM3Q53GG5 RNASE9-204ENST00000553541 1136 ntAPPRIS P3 TSL 1 (best) BASIC4.86□□□□□ -1.63
PDLIM3Q53GG5 AL390816.1-201ENST00000553990 322 ntTSL 3 BASIC4.86□□□□□ -1.63
PDLIM3Q53GG5 AC091078.2-201ENST00000557145 559 ntBASIC4.86□□□□□ -1.63
PDLIM3Q53GG5 AC012050.1-201ENST00000558185 472 ntTSL 3 BASIC4.86□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 88.2 ms