Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 AC096644.3-201ENST00000416788 338 ntBASIC5.09□□□□□ -1.59
SOX3P41225 AC007161.1-204ENST00000423039 460 ntBASIC5.09□□□□□ -1.59
SOX3P41225 CFL1P1-202ENST00000432948 411 ntBASIC5.09□□□□□ -1.59
SOX3P41225 NDUFB4P8-201ENST00000435351 367 ntBASIC5.09□□□□□ -1.59
SOX3P41225 AL122019.1-201ENST00000438575 798 ntTSL 3 BASIC5.09□□□□□ -1.59
SOX3P41225 RPL31P53-201ENST00000457065 348 ntBASIC5.09□□□□□ -1.59
SOX3P41225 AC089999.1-201ENST00000460336 374 ntBASIC5.09□□□□□ -1.59
SOX3P41225 ATG10-AS1-201ENST00000504846 648 ntBASIC5.09□□□□□ -1.59
SOX3P41225 AC019133.1-201ENST00000508292 420 ntTSL 3 BASIC5.09□□□□□ -1.59
SOX3P41225 AP001267.3-204ENST00000528578 423 ntTSL 3 BASIC5.09□□□□□ -1.59
SOX3P41225 TRDV3-201ENST00000535880 425 ntAPPRIS P1 BASIC5.09□□□□□ -1.59
SOX3P41225 TEX49-202ENST00000548380 573 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.59
SOX3P41225 H3F3BP2-201ENST00000583907 357 ntBASIC5.09□□□□□ -1.59
SOX3P41225 AC011444.3-201ENST00000588342 325 ntTSL 3 BASIC5.09□□□□□ -1.59
SOX3P41225 SMIM24-204ENST00000591708 660 ntAPPRIS ALT2 TSL 2 BASIC5.09□□□□□ -1.59
SOX3P41225 AC105265.3-202ENST00000610188 459 ntTSL 5 BASIC5.09□□□□□ -1.59
SOX3P41225 AL356752.1-201ENST00000615844 593 ntBASIC5.09□□□□□ -1.59
SOX3P41225 CPNE4-214ENST00000617767 3556 ntTSL 2 BASIC5.09□□□□□ -1.59
SOX3P41225 ZNF418-205ENST00000595830 3543 ntAPPRIS P3 TSL 1 (best) BASIC5.09□□□□□ -1.59
SOX3P41225 ZNF347-202ENST00000452676 4553 ntAPPRIS ALT2 TSL 2 BASIC5.09□□□□□ -1.59
SOX3P41225 ARID2-202ENST00000422737 5481 ntTSL 1 (best) BASIC5.09□□□□□ -1.59
SOX3P41225 ERP27-201ENST00000266397 2096 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.59
SOX3P41225 PIAS2-204ENST00000585916 11075 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.6
SOX3P41225 FSHB-202ENST00000417547 1890 ntAPPRIS P1 TSL 5 BASIC5.09□□□□□ -1.6
SOX3P41225 LINC01091-203ENST00000514823 5262 ntTSL 1 (best) BASIC5.09□□□□□ -1.6
SOX3P41225 XRN1-201ENST00000264951 10143 ntAPPRIS P3 TSL 1 (best) BASIC5.08□□□□□ -1.6
SOX3P41225 GPHN-204ENST00000543237 2459 ntTSL 2 BASIC5.08□□□□□ -1.6
SOX3P41225 GLYATL1-202ENST00000317391 1627 ntAPPRIS ALT2 TSL 1 (best) BASIC5.08□□□□□ -1.6
SOX3P41225 LARS-201ENST00000274562 2213 ntTSL 2 BASIC5.08□□□□□ -1.6
SOX3P41225 Z83820.1-201ENST00000456978 1499 ntBASIC5.08□□□□□ -1.6
SOX3P41225 WDYHV1-208ENST00000523984 1491 ntTSL 2 BASIC5.08□□□□□ -1.6
SOX3P41225 SEMA6D-210ENST00000558816 4419 ntTSL 5 BASIC5.08□□□□□ -1.6
SOX3P41225 ZNF616-204ENST00000600228 4335 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
SOX3P41225 NAT1-208ENST00000520546 1446 ntAPPRIS P1 BASIC5.08□□□□□ -1.6
SOX3P41225 RARSP1-201ENST00000542842 1418 ntBASIC5.08□□□□□ -1.6
SOX3P41225 TRPC4-204ENST00000379673 2760 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
SOX3P41225 OR4F13P-202ENST00000560066 2054 ntBASIC5.08□□□□□ -1.6
SOX3P41225 ATP5A1P1-201ENST00000454088 1321 ntBASIC5.08□□□□□ -1.6
SOX3P41225 AC010266.2-201ENST00000564741 3255 ntBASIC5.08□□□□□ -1.6
SOX3P41225 ZNF569-203ENST00000392150 1918 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
SOX3P41225 EIF1B-201ENST00000232905 1010 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
SOX3P41225 AC092681.1-201ENST00000297369 291 ntBASIC5.08□□□□□ -1.6
SOX3P41225 U3.7-201ENST00000363668 216 ntBASIC5.08□□□□□ -1.6
SOX3P41225 MYO3A-202ENST00000376301 727 ntTSL 5 BASIC5.08□□□□□ -1.6
SOX3P41225 RNU1-77P-201ENST00000390868 162 ntBASIC5.08□□□□□ -1.6
SOX3P41225 AC009804.1-201ENST00000400949 179 ntBASIC5.08□□□□□ -1.6
SOX3P41225 AHSA2-203ENST00000410073 479 ntTSL 5 BASIC5.08□□□□□ -1.6
SOX3P41225 MARK2P12-201ENST00000420129 585 ntBASIC5.08□□□□□ -1.6
SOX3P41225 AC007064.3-201ENST00000422608 359 ntBASIC5.08□□□□□ -1.6
SOX3P41225 MTCO1P57-201ENST00000432182 261 ntBASIC5.08□□□□□ -1.6
SOX3P41225 NDUFA5P1-201ENST00000433858 341 ntBASIC5.08□□□□□ -1.6
SOX3P41225 AC008269.1-201ENST00000438070 646 ntTSL 3 BASIC5.08□□□□□ -1.6
SOX3P41225 AC114878.1-201ENST00000441166 358 ntBASIC5.08□□□□□ -1.6
SOX3P41225 AC017099.1-201ENST00000448261 1028 ntBASIC5.08□□□□□ -1.6
SOX3P41225 AC004069.1-201ENST00000504082 549 ntTSL 4 BASIC5.08□□□□□ -1.6
SOX3P41225 AC026782.2-201ENST00000510845 636 ntBASIC5.08□□□□□ -1.6
SOX3P41225 AC090541.1-201ENST00000519803 467 ntTSL 3 BASIC5.08□□□□□ -1.6
SOX3P41225 AC103855.1-201ENST00000525926 564 ntTSL 2 BASIC5.08□□□□□ -1.6
SOX3P41225 AC013549.2-201ENST00000526953 489 ntTSL 3 BASIC5.08□□□□□ -1.6
SOX3P41225 ST3GAL3-233ENST00000531816 344 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
SOX3P41225 AC009509.1-201ENST00000536317 1110 ntTSL 5 BASIC5.08□□□□□ -1.6
SOX3P41225 TNFSF11-205ENST00000544862 818 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
SOX3P41225 AC090022.1-201ENST00000546569 311 ntBASIC5.08□□□□□ -1.6
SOX3P41225 AC098850.3-201ENST00000577569 771 ntTSL 3 BASIC5.08□□□□□ -1.6
SOX3P41225 AC091059.1-201ENST00000585190 215 ntTSL 3 BASIC5.08□□□□□ -1.6
SOX3P41225 AC022916.4-201ENST00000585646 475 ntTSL 3 BASIC5.08□□□□□ -1.6
SOX3P41225 AC000068.2-201ENST00000608816 460 ntBASIC5.08□□□□□ -1.6
SOX3P41225 LINC02266-201ENST00000610239 1151 ntTSL 3 BASIC5.08□□□□□ -1.6
SOX3P41225 AC243654.3-201ENST00000617427 735 ntTSL 5 BASIC5.08□□□□□ -1.6
SOX3P41225 AC026367.3-201ENST00000619032 590 ntBASIC5.08□□□□□ -1.6
SOX3P41225 AC073592.7-201ENST00000623659 507 ntBASIC5.08□□□□□ -1.6
SOX3P41225 ADAMTS9-AS1-210ENST00000625328 699 ntTSL 5 BASIC5.08□□□□□ -1.6
SOX3P41225 AC004808.2-201ENST00000627965 773 ntBASIC5.08□□□□□ -1.6
SOX3P41225 NEK3-211ENST00000629912 141 ntTSL 5 BASIC5.08□□□□□ -1.6
SOX3P41225 LINC01708-202ENST00000634316 859 ntTSL 5 BASIC5.08□□□□□ -1.6
SOX3P41225 FRG1EP-201ENST00000634469 770 ntBASIC5.08□□□□□ -1.6
SOX3P41225 PDE4D-229ENST00000638939 375 ntTSL 5 BASIC5.08□□□□□ -1.6
SOX3P41225 PCDH15-217ENST00000414778 9234 ntAPPRIS ALT2 TSL 5 BASIC5.08□□□□□ -1.6
SOX3P41225 PCDH15-227ENST00000614895 9249 ntAPPRIS ALT2 TSL 5 BASIC5.08□□□□□ -1.6
SOX3P41225 OR8J2-201ENST00000641465 2883 ntAPPRIS P1 BASIC5.08□□□□□ -1.6
SOX3P41225 KAT6B-201ENST00000287239 8287 ntAPPRIS P3 TSL 1 (best) BASIC5.08□□□□□ -1.6
SOX3P41225 FOXP2-203ENST00000378237 2187 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
SOX3P41225 AMY1C-201ENST00000370079 1632 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
SOX3P41225 PIGN-217ENST00000591238 1622 ntTSL 5 BASIC5.08□□□□□ -1.6
SOX3P41225 CTAGE5-219ENST00000640607 4239 ntAPPRIS P5 TSL 1 (best) BASIC5.08□□□□□ -1.6
SOX3P41225 MAPK6PS2-201ENST00000379571 2060 ntBASIC5.08□□□□□ -1.6
SOX3P41225 ZEB2-241ENST00000637304 9158 ntTSL 5 BASIC5.07□□□□□ -1.6
SOX3P41225 AC120036.2-201ENST00000509729 1474 ntBASIC5.07□□□□□ -1.6
SOX3P41225 AL034549.2-201ENST00000618285 3373 ntBASIC5.07□□□□□ -1.6
SOX3P41225 AC073136.1-201ENST00000449426 2884 ntBASIC5.07□□□□□ -1.6
SOX3P41225 RAPH1-207ENST00000423104 1860 ntAPPRIS ALT2 TSL 5 BASIC5.07□□□□□ -1.6
SOX3P41225 ZNF83-202ENST00000536937 2726 ntAPPRIS P1 TSL 2 BASIC5.07□□□□□ -1.6
SOX3P41225 KMO-202ENST00000366557 4888 ntAPPRIS ALT2 TSL 5 BASIC5.07□□□□□ -1.6
SOX3P41225 SLCO1C1-209ENST00000545604 2557 ntTSL 2 BASIC5.07□□□□□ -1.6
SOX3P41225 OR11H6-201ENST00000315519 993 ntAPPRIS P1 BASIC5.07□□□□□ -1.6
SOX3P41225 OR14A2-201ENST00000366485 945 ntAPPRIS P1 BASIC5.07□□□□□ -1.6
SOX3P41225 C1orf146-201ENST00000370373 871 ntTSL 5 BASIC5.07□□□□□ -1.6
SOX3P41225 RNU6ATAC18P-201ENST00000408413 101 ntBASIC5.07□□□□□ -1.6
SOX3P41225 PSMA3-202ENST00000412908 908 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
SOX3P41225 RPL35AP24-201ENST00000413846 330 ntBASIC5.07□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 75.3 ms