Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 GTF2IP11-201ENST00000526931 420 ntBASIC8.48□□□□□ -1.05
CUX1P39880 C11orf74-210ENST00000534635 801 ntAPPRIS ALT2 TSL 2 BASIC8.48□□□□□ -1.05
CUX1P39880 TRDN-205ENST00000546248 1179 ntTSL 1 (best) BASIC8.48□□□□□ -1.05
CUX1P39880 AC239809.3-208ENST00000611452 531 ntTSL 5 BASIC8.48□□□□□ -1.05
CUX1P39880 ASB14-202ENST00000487349 3179 ntAPPRIS P2 TSL 1 (best) BASIC8.48□□□□□ -1.05
CUX1P39880 STON1-202ENST00000406226 5614 ntAPPRIS P1 TSL 1 (best) BASIC8.48□□□□□ -1.05
CUX1P39880 PPIAL4G-201ENST00000419275 3856 ntAPPRIS P1 BASIC8.48□□□□□ -1.05
CUX1P39880 ZNF573-201ENST00000339503 2014 ntTSL 5 BASIC8.48□□□□□ -1.05
CUX1P39880 SEC31A-217ENST00000505984 3596 ntTSL 1 (best) BASIC8.47□□□□□ -1.05
CUX1P39880 ENSA-214ENST00000513281 1369 ntTSL 2 BASIC8.47□□□□□ -1.05
CUX1P39880 RBPJ-202ENST00000342320 5761 ntAPPRIS P3 TSL 1 (best) BASIC8.47□□□□□ -1.05
CUX1P39880 CNOT1-216ENST00000569240 7660 ntAPPRIS ALT1 TSL 1 (best) BASIC8.47□□□□□ -1.05
CUX1P39880 ARMCX5-201ENST00000246174 2899 ntAPPRIS P1 TSL 2 BASIC8.47□□□□□ -1.05
CUX1P39880 ZBTB8B-201ENST00000609129 12834 ntAPPRIS P1 TSL 5 BASIC8.47□□□□□ -1.05
CUX1P39880 GPHN-204ENST00000543237 2459 ntTSL 2 BASIC8.47□□□□□ -1.05
CUX1P39880 PARD3B-213ENST00000614500 7538 ntTSL 5 BASIC8.47□□□□□ -1.05
CUX1P39880 CSNK1A1-205ENST00000515435 1856 ntTSL 5 BASIC8.47□□□□□ -1.05
CUX1P39880 MGAM-208ENST00000549489 6525 ntTSL 1 (best) BASIC8.47□□□□□ -1.05
CUX1P39880 PRDM2-202ENST00000311066 7437 ntAPPRIS ALT2 TSL 5 BASIC8.47□□□□□ -1.05
CUX1P39880 GHR-210ENST00000615111 4814 ntAPPRIS P1 TSL 5 BASIC8.47□□□□□ -1.05
CUX1P39880 ARID5B-201ENST00000279873 7891 ntAPPRIS P1 TSL 1 (best) BASIC8.47□□□□□ -1.05
CUX1P39880 SIRPD-201ENST00000381621 823 ntAPPRIS ALT2 TSL 3 BASIC8.47□□□□□ -1.05
CUX1P39880 Z97832.1-201ENST00000402490 328 ntBASIC8.47□□□□□ -1.05
CUX1P39880 RNU4-25P-201ENST00000410569 230 ntBASIC8.47□□□□□ -1.05
CUX1P39880 AC092920.1-201ENST00000428516 678 ntTSL 5 BASIC8.47□□□□□ -1.05
CUX1P39880 RPL7AP28-201ENST00000464513 571 ntBASIC8.47□□□□□ -1.05
CUX1P39880 RPS12P31-201ENST00000491419 398 ntBASIC8.47□□□□□ -1.05
CUX1P39880 RN7SL244P-201ENST00000493405 297 ntBASIC8.47□□□□□ -1.05
CUX1P39880 MIR4715-201ENST00000584117 79 ntBASIC8.47□□□□□ -1.05
CUX1P39880 UBA2-208ENST00000592791 910 ntTSL 2 BASIC8.47□□□□□ -1.05
CUX1P39880 AP001521.2-201ENST00000608772 546 ntBASIC8.47□□□□□ -1.05
CUX1P39880 AC010632.3-201ENST00000611377 369 ntBASIC8.47□□□□□ -1.05
CUX1P39880 CCL14-203ENST00000620991 426 ntTSL 1 (best) BASIC8.47□□□□□ -1.05
CUX1P39880 SLITRK4-202ENST00000356928 3074 ntAPPRIS P1 TSL 2 BASIC8.47□□□□□ -1.05
CUX1P39880 TECRL-201ENST00000381210 3573 ntAPPRIS P1 TSL 1 (best) BASIC8.47□□□□□ -1.05
CUX1P39880 RUFY3-201ENST00000226328 4233 ntTSL 1 (best) BASIC8.47□□□□□ -1.05
CUX1P39880 TEK-204ENST00000519097 3836 ntTSL 2 BASIC8.47□□□□□ -1.05
CUX1P39880 CLDN12-203ENST00000394605 3488 ntAPPRIS P1 TSL 2 BASIC8.47□□□□□ -1.05
CUX1P39880 ZNF143-201ENST00000299606 2562 ntTSL 5 BASIC8.47□□□□□ -1.05
CUX1P39880 ETFBKMT-201ENST00000357721 6128 ntAPPRIS P1 TSL 1 (best) BASIC8.46□□□□□ -1.05
CUX1P39880 RCAN3-201ENST00000374393 382 ntTSL 1 (best) BASIC8.46□□□□□ -1.05
CUX1P39880 TRAJ38-201ENST00000390499 62 ntAPPRIS P1 BASIC8.46□□□□□ -1.05
CUX1P39880 ATXN10-203ENST00000402380 564 ntTSL 4 BASIC8.46□□□□□ -1.05
CUX1P39880 CACYBP-203ENST00000406752 243 ntTSL 5 BASIC8.46□□□□□ -1.05
CUX1P39880 CYP2AC1P-201ENST00000407830 1173 ntBASIC8.46□□□□□ -1.05
CUX1P39880 FABP7P1-201ENST00000424004 391 ntBASIC8.46□□□□□ -1.05
CUX1P39880 RPL23AP1-201ENST00000428990 471 ntBASIC8.46□□□□□ -1.05
CUX1P39880 SLC25A18P1-201ENST00000449385 454 ntBASIC8.46□□□□□ -1.05
CUX1P39880 AL031668.1-201ENST00000451556 603 ntTSL 3 BASIC8.46□□□□□ -1.05
CUX1P39880 TM4SF1-AS1-202ENST00000496491 754 ntTSL 2 BASIC8.46□□□□□ -1.05
CUX1P39880 RN7SKP276-201ENST00000516242 268 ntBASIC8.46□□□□□ -1.05
CUX1P39880 AC104036.1-201ENST00000523550 611 ntTSL 3 BASIC8.46□□□□□ -1.05
CUX1P39880 AC084824.2-201ENST00000548906 345 ntBASIC8.46□□□□□ -1.05
CUX1P39880 AL110118.1-201ENST00000553543 400 ntBASIC8.46□□□□□ -1.05
CUX1P39880 AC100872.1-201ENST00000577765 501 ntTSL 5 BASIC8.46□□□□□ -1.05
CUX1P39880 AC118757.1-201ENST00000586982 453 ntTSL 2 BASIC8.46□□□□□ -1.05
CUX1P39880 CCDC25-212ENST00000640944 261 ntTSL 5 BASIC8.46□□□□□ -1.05
CUX1P39880 AIMP1-203ENST00000442366 2519 ntAPPRIS P3 TSL 5 BASIC8.46□□□□□ -1.06
CUX1P39880 LINC00550-201ENST00000629293 3434 ntTSL 1 (best) BASIC8.46□□□□□ -1.06
CUX1P39880 STAU2-220ENST00000522695 2646 ntAPPRIS ALT1 TSL 1 (best) BASIC8.46□□□□□ -1.06
CUX1P39880 KIAA1549L-202ENST00000321505 11678 ntAPPRIS P2 TSL 1 (best) BASIC8.46□□□□□ -1.06
CUX1P39880 AC099654.2-201ENST00000433031 1980 ntBASIC8.46□□□□□ -1.06
CUX1P39880 ARHGAP20-203ENST00000527598 5998 ntAPPRIS ALT2 TSL 1 (best) BASIC8.46□□□□□ -1.06
CUX1P39880 LINC02203-203ENST00000625989 1600 ntTSL 1 (best) BASIC8.46□□□□□ -1.06
CUX1P39880 AC037459.2-201ENST00000514980 4076 ntTSL 2 BASIC8.45□□□□□ -1.06
CUX1P39880 BTRC-204ENST00000408038 5982 ntAPPRIS ALT1 TSL 1 (best) BASIC8.45□□□□□ -1.06
CUX1P39880 MIR129-1-201ENST00000384972 72 ntBASIC8.45□□□□□ -1.06
CUX1P39880 AL021331.1-201ENST00000402817 582 ntBASIC8.45□□□□□ -1.06
CUX1P39880 NRBF2P3-201ENST00000432731 865 ntBASIC8.45□□□□□ -1.06
CUX1P39880 RPL7AP61-201ENST00000443410 636 ntBASIC8.45□□□□□ -1.06
CUX1P39880 Z73495.1-201ENST00000444982 147 ntTSL 3 BASIC8.45□□□□□ -1.06
CUX1P39880 EIF2S2P2-201ENST00000447161 982 ntBASIC8.45□□□□□ -1.06
CUX1P39880 AC090804.1-201ENST00000448870 490 ntBASIC8.45□□□□□ -1.06
CUX1P39880 RN7SL443P-201ENST00000464331 290 ntBASIC8.45□□□□□ -1.06
CUX1P39880 NIP7P2-201ENST00000485801 544 ntBASIC8.45□□□□□ -1.06
CUX1P39880 LINC02217-201ENST00000505844 687 ntTSL 2 BASIC8.45□□□□□ -1.06
CUX1P39880 AC087783.1-201ENST00000527135 564 ntTSL 4 BASIC8.45□□□□□ -1.06
CUX1P39880 AC009139.2-201ENST00000569032 566 ntTSL 5 BASIC8.45□□□□□ -1.06
CUX1P39880 AC105402.3-203ENST00000608822 885 ntTSL 5 BASIC8.45□□□□□ -1.06
CUX1P39880 AL359757.1-201ENST00000623176 255 ntBASIC8.45□□□□□ -1.06
CUX1P39880 NACA-203ENST00000454682 6629 ntTSL 5 BASIC8.45□□□□□ -1.06
CUX1P39880 DMXL1-215ENST00000539542 11236 ntTSL 1 (best) BASIC8.45□□□□□ -1.06
CUX1P39880 RRN3-202ENST00000327307 2039 ntTSL 2 BASIC8.45□□□□□ -1.06
CUX1P39880 BNC2-203ENST00000380672 12844 ntAPPRIS P2 TSL 2 BASIC8.45□□□□□ -1.06
CUX1P39880 THEMIS-206ENST00000630369 2786 ntAPPRIS ALT2 TSL 1 (best) BASIC8.45□□□□□ -1.06
CUX1P39880 AL158066.1-201ENST00000451298 3796 ntTSL 2 BASIC8.45□□□□□ -1.06
CUX1P39880 MEF2C-201ENST00000340208 6192 ntAPPRIS ALT1 TSL 1 (best) BASIC8.45□□□□□ -1.06
CUX1P39880 SLC9A6-212ENST00000637195 4858 ntTSL 5 BASIC8.44□□□□□ -1.06
CUX1P39880 RN7SKP153-201ENST00000365026 316 ntBASIC8.44□□□□□ -1.06
CUX1P39880 S100A9-201ENST00000368738 577 ntAPPRIS P1 TSL 1 (best) BASIC8.44□□□□□ -1.06
CUX1P39880 KRTAP3-2-201ENST00000391587 702 ntAPPRIS P1 BASIC8.44□□□□□ -1.06
CUX1P39880 AL603962.1-201ENST00000413148 436 ntTSL 5 BASIC8.44□□□□□ -1.06
CUX1P39880 AC009480.2-201ENST00000422916 432 ntBASIC8.44□□□□□ -1.06
CUX1P39880 AC234779.1-201ENST00000425910 285 ntBASIC8.44□□□□□ -1.06
CUX1P39880 AP003080.1-202ENST00000526526 915 ntBASIC8.44□□□□□ -1.06
CUX1P39880 SCARNA9-201ENST00000530422 353 ntBASIC8.44□□□□□ -1.06
CUX1P39880 MRE11-209ENST00000540013 1212 ntTSL 1 (best) BASIC8.44□□□□□ -1.06
CUX1P39880 AC069234.2-201ENST00000541383 575 ntTSL 3 BASIC8.44□□□□□ -1.06
CUX1P39880 AC092132.1-201ENST00000570859 352 ntTSL 3 BASIC8.44□□□□□ -1.06
CUX1P39880 MIR4277-201ENST00000578298 84 ntBASIC8.44□□□□□ -1.06
Retrieved 100 of 98,524 protein–RNA pairs in 102.1 ms