Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 PAK3-213ENST00000620137 2130 ntTSL 5 BASIC5.33□□□□□ -1.56
HMGA1P17096 SSH2-201ENST00000269033 9327 ntAPPRIS P3 TSL 1 (best) BASIC5.33□□□□□ -1.56
HMGA1P17096 RIC3-202ENST00000335425 5223 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
HMGA1P17096 TRAT1-202ENST00000426646 1596 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
HMGA1P17096 CLCA3P-201ENST00000284054 2407 ntTSL 5 BASIC5.33□□□□□ -1.56
HMGA1P17096 FAT4-202ENST00000394329 16123 ntAPPRIS P1 TSL 5 BASIC5.33□□□□□ -1.56
HMGA1P17096 PNPLA4-203ENST00000444736 2752 ntAPPRIS P1 TSL 4 BASIC5.33□□□□□ -1.56
HMGA1P17096 SEMA6D-210ENST00000558816 4419 ntTSL 5 BASIC5.32□□□□□ -1.56
HMGA1P17096 AL136985.3-202ENST00000636386 2708 ntTSL 5 BASIC5.32□□□□□ -1.56
HMGA1P17096 ESRRG-208ENST00000391890 5542 ntAPPRIS P1 TSL 5 BASIC5.32□□□□□ -1.56
HMGA1P17096 CASC8-203ENST00000502082 1420 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
HMGA1P17096 ALB-219ENST00000621085 1418 ntTSL 5 BASIC5.32□□□□□ -1.56
HMGA1P17096 ZNF492-201ENST00000456783 4245 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
HMGA1P17096 RNF150-202ENST00000420921 3673 ntTSL 2 BASIC5.32□□□□□ -1.56
HMGA1P17096 DOPEY1-201ENST00000237163 7995 ntAPPRIS ALT1 TSL 5 BASIC5.32□□□□□ -1.56
HMGA1P17096 IL5-201ENST00000231454 816 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
HMGA1P17096 RNA5SP453-201ENST00000362503 119 ntBASIC5.32□□□□□ -1.56
HMGA1P17096 RN7SKP113-201ENST00000363891 295 ntBASIC5.32□□□□□ -1.56
HMGA1P17096 RNA5SP87-201ENST00000384155 118 ntBASIC5.32□□□□□ -1.56
HMGA1P17096 SNORA66-201ENST00000384792 133 ntBASIC5.32□□□□□ -1.56
HMGA1P17096 TRAV16-201ENST00000390444 329 ntAPPRIS P1 BASIC5.32□□□□□ -1.56
HMGA1P17096 TAS2R31-201ENST00000390675 1021 ntAPPRIS P1 BASIC5.32□□□□□ -1.56
HMGA1P17096 AL035419.1-201ENST00000397037 564 ntBASIC5.32□□□□□ -1.56
HMGA1P17096 AP002530.1-201ENST00000405705 684 ntBASIC5.32□□□□□ -1.56
HMGA1P17096 RPL37P18-201ENST00000411602 243 ntBASIC5.32□□□□□ -1.56
HMGA1P17096 HSPD1P12-201ENST00000429127 1069 ntBASIC5.32□□□□□ -1.56
HMGA1P17096 AL139819.1-201ENST00000429420 471 ntTSL 3 BASIC5.32□□□□□ -1.56
HMGA1P17096 AC009238.2-201ENST00000431026 355 ntBASIC5.32□□□□□ -1.56
HMGA1P17096 AC016292.1-201ENST00000438344 235 ntTSL 3 BASIC5.32□□□□□ -1.56
HMGA1P17096 AC073648.4-201ENST00000442655 781 ntBASIC5.32□□□□□ -1.56
HMGA1P17096 MED28P3-201ENST00000444288 531 ntBASIC5.32□□□□□ -1.56
HMGA1P17096 AC079760.2-201ENST00000449361 681 ntTSL 5 BASIC5.32□□□□□ -1.56
HMGA1P17096 IGHV5-78-201ENST00000450948 295 ntBASIC5.32□□□□□ -1.56
HMGA1P17096 RN7SL443P-201ENST00000464331 290 ntBASIC5.32□□□□□ -1.56
HMGA1P17096 AC010350.1-201ENST00000504908 231 ntBASIC5.32□□□□□ -1.56
HMGA1P17096 LINC02502-201ENST00000505122 642 ntTSL 4 BASIC5.32□□□□□ -1.56
HMGA1P17096 AC132219.1-201ENST00000524337 478 ntTSL 5 BASIC5.32□□□□□ -1.56
HMGA1P17096 GCSHP4-201ENST00000538792 439 ntBASIC5.32□□□□□ -1.56
HMGA1P17096 NMNAT1P1-201ENST00000554095 876 ntBASIC5.32□□□□□ -1.56
HMGA1P17096 AC009117.1-201ENST00000563948 554 ntBASIC5.32□□□□□ -1.56
HMGA1P17096 AC010401.3-201ENST00000576600 582 ntTSL 4 BASIC5.32□□□□□ -1.56
HMGA1P17096 AC015878.1-201ENST00000584611 679 ntTSL 3 BASIC5.32□□□□□ -1.56
HMGA1P17096 LINC01676-204ENST00000595309 871 ntTSL 5 BASIC5.32□□□□□ -1.56
HMGA1P17096 AC239809.3-206ENST00000596091 741 ntTSL 5 BASIC5.32□□□□□ -1.56
HMGA1P17096 BNIP3P35-201ENST00000604530 490 ntBASIC5.32□□□□□ -1.56
HMGA1P17096 AL162574.1-201ENST00000615702 950 ntBASIC5.32□□□□□ -1.56
HMGA1P17096 LINC01232-203ENST00000625369 576 ntTSL 4 BASIC5.32□□□□□ -1.56
HMGA1P17096 ERVFRD-3-201ENST00000578561 1617 ntBASIC5.32□□□□□ -1.56
HMGA1P17096 SLC5A12-201ENST00000280467 2269 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
HMGA1P17096 AC091045.1-201ENST00000561460 2277 ntTSL 5 BASIC5.32□□□□□ -1.56
HMGA1P17096 ABCA10-201ENST00000269081 6362 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
HMGA1P17096 ZNF630-207ENST00000616492 2220 ntAPPRIS ALT2 TSL 5 BASIC5.32□□□□□ -1.56
HMGA1P17096 ZNF418-205ENST00000595830 3543 ntAPPRIS P3 TSL 1 (best) BASIC5.32□□□□□ -1.56
HMGA1P17096 LIPF-203ENST00000394375 1470 ntTSL 2 BASIC5.32□□□□□ -1.56
HMGA1P17096 BX088651.2-201ENST00000425493 3614 ntTSL 2 BASIC5.31□□□□□ -1.56
HMGA1P17096 IPO11-203ENST00000409534 1725 ntTSL 2 BASIC5.31□□□□□ -1.56
HMGA1P17096 CCDC62-205ENST00000537566 3537 ntAPPRIS ALT2 TSL 2 BASIC5.31□□□□□ -1.56
HMGA1P17096 ZNF573-208ENST00000536220 2257 ntAPPRIS P1 TSL 3 BASIC5.31□□□□□ -1.56
HMGA1P17096 ZBTB44-210ENST00000530205 2179 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
HMGA1P17096 MGAM2-201ENST00000477922 7867 ntAPPRIS P1 TSL 5 BASIC5.31□□□□□ -1.56
HMGA1P17096 OR11H1-201ENST00000252835 982 ntAPPRIS P1 BASIC5.31□□□□□ -1.56
HMGA1P17096 SNORA48.4-201ENST00000391089 134 ntBASIC5.31□□□□□ -1.56
HMGA1P17096 RPL7P58-201ENST00000402913 758 ntBASIC5.31□□□□□ -1.56
HMGA1P17096 LINC02528-201ENST00000417800 381 ntTSL 2 BASIC5.31□□□□□ -1.56
HMGA1P17096 AC244394.2-201ENST00000425109 735 ntTSL 5 BASIC5.31□□□□□ -1.56
HMGA1P17096 RPL7P11-201ENST00000437586 658 ntBASIC5.31□□□□□ -1.56
HMGA1P17096 LINC01133-202ENST00000443364 1266 ntTSL 5 BASIC5.31□□□□□ -1.56
HMGA1P17096 OR7E125P-201ENST00000443450 846 ntBASIC5.31□□□□□ -1.56
HMGA1P17096 AL354714.3-201ENST00000447284 493 ntBASIC5.31□□□□□ -1.56
HMGA1P17096 BX842559.2-201ENST00000451418 605 ntBASIC5.31□□□□□ -1.56
HMGA1P17096 LINC02083-201ENST00000462835 515 ntTSL 3 BASIC5.31□□□□□ -1.56
HMGA1P17096 ADGRL3-AS1-202ENST00000504135 542 ntTSL 5 BASIC5.31□□□□□ -1.56
HMGA1P17096 SDHAF2-208ENST00000543265 438 ntTSL 5 BASIC5.31□□□□□ -1.56
HMGA1P17096 AC007527.1-202ENST00000543347 382 ntTSL 3 BASIC5.31□□□□□ -1.56
HMGA1P17096 OR11H2-201ENST00000556246 948 ntAPPRIS P1 BASIC5.31□□□□□ -1.56
HMGA1P17096 AC087501.4-201ENST00000574460 235 ntTSL 5 BASIC5.31□□□□□ -1.56
HMGA1P17096 AL121989.1-201ENST00000585888 746 ntTSL 3 BASIC5.31□□□□□ -1.56
HMGA1P17096 Z98949.1-220ENST00000609809 804 ntTSL 5 BASIC5.31□□□□□ -1.56
HMGA1P17096 MIR6748-201ENST00000610433 71 ntBASIC5.31□□□□□ -1.56
HMGA1P17096 CALN1-203ENST00000395276 9189 ntAPPRIS P3 TSL 1 (best) BASIC5.31□□□□□ -1.56
HMGA1P17096 VWC2L-201ENST00000312504 4610 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
HMGA1P17096 SLC4A10-202ENST00000375514 5710 ntAPPRIS ALT1 TSL 2 BASIC5.31□□□□□ -1.56
HMGA1P17096 ARHGEF12-213ENST00000532993 8753 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
HMGA1P17096 TMEM99-201ENST00000301665 2058 ntAPPRIS P2 TSL 2 BASIC5.31□□□□□ -1.56
HMGA1P17096 PHC3-217ENST00000497658 2087 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
HMGA1P17096 VPS13B-203ENST00000358544 14094 ntAPPRIS P4 TSL 1 (best) BASIC5.31□□□□□ -1.56
HMGA1P17096 SRRM1-202ENST00000374389 3110 ntAPPRIS ALT2 TSL 5 BASIC5.31□□□□□ -1.56
HMGA1P17096 SLCO1A2-212ENST00000458504 2008 ntTSL 2 BASIC5.31□□□□□ -1.56
HMGA1P17096 CDH19-201ENST00000262150 6341 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
HMGA1P17096 GABRA1-215ENST00000636573 2262 ntAPPRIS P1 TSL 5 BASIC5.31□□□□□ -1.56
HMGA1P17096 ARHGEF6-203ENST00000370622 4779 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
HMGA1P17096 PHC3-214ENST00000494943 5030 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
HMGA1P17096 RYR3-208ENST00000622037 15564 ntAPPRIS ALT2 TSL 5 BASIC5.31□□□□□ -1.56
HMGA1P17096 ZNF569-203ENST00000392150 1918 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
HMGA1P17096 AC087257.1-201ENST00000506925 2639 ntTSL 4 BASIC5.3□□□□□ -1.56
HMGA1P17096 ARPP19-208ENST00000566423 5362 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
HMGA1P17096 DNM1P47-202ENST00000561463 15043 ntTSL 5 BASIC5.3□□□□□ -1.56
HMGA1P17096 ALG11-202ENST00000521508 2558 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
HMGA1P17096 PYHIN1-203ENST00000368140 2083 ntAPPRIS P4 TSL 1 (best) BASIC5.3□□□□□ -1.56
HMGA1P17096 ZBTB25-201ENST00000394715 2094 ntAPPRIS P1 TSL 2 BASIC5.3□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 96.8 ms