Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 AL161669.1-201ENST00000559843 386 ntTSL 3 BASIC23.3■■□□□ 1.32
SMC1BQ8NDV3 LINC00092-202ENST00000580908 580 ntTSL 2 BASIC23.3■■□□□ 1.32
SMC1BQ8NDV3 ZNF524-203ENST00000591046 1260 ntAPPRIS P1 BASIC23.3■■□□□ 1.32
SMC1BQ8NDV3 PLAUR-214ENST00000601723 1205 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
SMC1BQ8NDV3 TPGS2-221ENST00000614939 1268 ntTSL 4 BASIC23.3■■□□□ 1.32
SMC1BQ8NDV3 AL137002.2-201ENST00000639766 2238 ntTSL 5 BASIC23.3■■□□□ 1.32
SMC1BQ8NDV3 RBAK-202ENST00000396912 6551 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
SMC1BQ8NDV3 RAB34-203ENST00000395243 1597 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
SMC1BQ8NDV3 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC23.3■■□□□ 1.32
SMC1BQ8NDV3 DISC1-223ENST00000628350 2363 ntAPPRIS ALT2 TSL 1 (best) BASIC23.29■■□□□ 1.32
SMC1BQ8NDV3 HRH3-202ENST00000340177 2659 ntAPPRIS P2 TSL 1 (best) BASIC23.29■■□□□ 1.32
SMC1BQ8NDV3 BCL11A-209ENST00000489516 1508 ntTSL 5 BASIC23.29■■□□□ 1.32
SMC1BQ8NDV3 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
SMC1BQ8NDV3 RAB34-201ENST00000301043 1592 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
SMC1BQ8NDV3 PTPMT1-201ENST00000326656 928 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
SMC1BQ8NDV3 HBZP1-201ENST00000354915 429 ntBASIC23.29■■□□□ 1.32
SMC1BQ8NDV3 GLIPR1L1-202ENST00000378695 885 ntAPPRIS ALT2 TSL 1 (best) BASIC23.29■■□□□ 1.32
SMC1BQ8NDV3 GGT1-204ENST00000401885 968 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
SMC1BQ8NDV3 DERL1-203ENST00000419562 918 ntTSL 2 BASIC23.29■■□□□ 1.32
SMC1BQ8NDV3 PHB2-202ENST00000440277 996 ntTSL 5 BASIC23.29■■□□□ 1.32
SMC1BQ8NDV3 AP002383.4-201ENST00000442518 975 ntBASIC23.29■■□□□ 1.32
SMC1BQ8NDV3 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC23.29■■□□□ 1.32
SMC1BQ8NDV3 NEK7-207ENST00000538004 1036 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
SMC1BQ8NDV3 ZNF410-206ENST00000540593 1722 ntTSL 2 BASIC23.29■■□□□ 1.32
SMC1BQ8NDV3 AC091304.2-201ENST00000564639 760 ntBASIC23.29■■□□□ 1.32
SMC1BQ8NDV3 BEAN1-211ENST00000622872 1171 ntAPPRIS P2 TSL 5 BASIC23.29■■□□□ 1.32
SMC1BQ8NDV3 AL513523.2-201ENST00000633218 660 ntTSL 3 BASIC23.29■■□□□ 1.32
SMC1BQ8NDV3 IQCJ-SCHIP1-201ENST00000412423 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC23.29■■□□□ 1.32
SMC1BQ8NDV3 FAM228A-201ENST00000295150 1774 ntAPPRIS P2 TSL 1 (best) BASIC23.29■■□□□ 1.32
SMC1BQ8NDV3 GPAA1-202ENST00000361036 1840 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
SMC1BQ8NDV3 GDI1-204ENST00000447750 2474 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
SMC1BQ8NDV3 TUBA8-201ENST00000316027 1518 ntTSL 2 BASIC23.28■■□□□ 1.32
SMC1BQ8NDV3 NRXN2-203ENST00000377551 6373 ntAPPRIS P3 TSL 1 (best) BASIC23.28■■□□□ 1.32
SMC1BQ8NDV3 BX119927.1-201ENST00000636596 1552 ntBASIC23.28■■□□□ 1.32
SMC1BQ8NDV3 CADM1-201ENST00000331581 1766 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
SMC1BQ8NDV3 MOSPD3-201ENST00000223054 1053 ntAPPRIS P1 TSL 2 BASIC23.28■■□□□ 1.32
SMC1BQ8NDV3 NME1-202ENST00000336097 986 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
SMC1BQ8NDV3 TSPAN14-202ENST00000341863 1037 ntTSL 5 BASIC23.28■■□□□ 1.32
SMC1BQ8NDV3 HIST1H2AI-201ENST00000358739 503 ntAPPRIS P1 BASIC23.28■■□□□ 1.32
SMC1BQ8NDV3 TIMM17B-201ENST00000376582 950 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
SMC1BQ8NDV3 NME1-203ENST00000393196 940 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
SMC1BQ8NDV3 DMKN-215ENST00000451297 1111 ntAPPRIS ALT2 TSL 1 (best) BASIC23.28■■□□□ 1.32
SMC1BQ8NDV3 AL133343.2-201ENST00000457213 370 ntTSL 3 BASIC23.28■■□□□ 1.32
SMC1BQ8NDV3 LINC02106-201ENST00000506534 606 ntTSL 2 BASIC23.28■■□□□ 1.32
SMC1BQ8NDV3 NT5C-210ENST00000582160 860 ntTSL 2 BASIC23.28■■□□□ 1.32
SMC1BQ8NDV3 AC011498.5-201ENST00000592027 486 ntBASIC23.28■■□□□ 1.32
SMC1BQ8NDV3 AL121772.3-201ENST00000610840 674 ntBASIC23.28■■□□□ 1.32
SMC1BQ8NDV3 ZFP69B-204ENST00000484445 1976 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
SMC1BQ8NDV3 MAGED2-213ENST00000627068 1811 ntAPPRIS ALT2 TSL 5 BASIC23.28■■□□□ 1.32
SMC1BQ8NDV3 SNAPC2-201ENST00000221573 1542 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
SMC1BQ8NDV3 SLC22A17-201ENST00000206544 2284 ntAPPRIS P4 TSL 1 (best) BASIC23.28■■□□□ 1.32
SMC1BQ8NDV3 STAC-204ENST00000457375 1366 ntTSL 2 BASIC23.27■■□□□ 1.32
SMC1BQ8NDV3 ARSB-202ENST00000396151 2316 ntTSL 1 (best) BASIC23.27■■□□□ 1.32
SMC1BQ8NDV3 GPRC5C-204ENST00000392629 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC23.27■■□□□ 1.32
SMC1BQ8NDV3 ANKRD44-204ENST00000409919 1622 ntTSL 1 (best) BASIC23.27■■□□□ 1.32
SMC1BQ8NDV3 FARSA-201ENST00000314606 1814 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
SMC1BQ8NDV3 UPK3B-201ENST00000257632 1296 ntAPPRIS P5 TSL 2 BASIC23.27■■□□□ 1.32
SMC1BQ8NDV3 CELA2A-201ENST00000359621 919 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
SMC1BQ8NDV3 MIR1233-2-201ENST00000408138 82 ntBASIC23.27■■□□□ 1.32
SMC1BQ8NDV3 MIR1233-1-201ENST00000408722 82 ntBASIC23.27■■□□□ 1.32
SMC1BQ8NDV3 AC093901.1-201ENST00000414886 778 ntTSL 5 BASIC23.27■■□□□ 1.32
SMC1BQ8NDV3 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC23.27■■□□□ 1.32
SMC1BQ8NDV3 AP003396.3-201ENST00000530918 778 ntTSL 5 BASIC23.27■■□□□ 1.32
SMC1BQ8NDV3 AC021739.3-201ENST00000557908 855 ntTSL 2 BASIC23.27■■□□□ 1.32
SMC1BQ8NDV3 LAYN-201ENST00000375614 2066 ntAPPRIS P3 TSL 1 (best) BASIC23.27■■□□□ 1.32
SMC1BQ8NDV3 ERF-201ENST00000222329 2698 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
SMC1BQ8NDV3 TMEM51-201ENST00000376008 1931 ntAPPRIS P1 TSL 2 BASIC23.27■■□□□ 1.32
SMC1BQ8NDV3 TIGD5-201ENST00000504548 5390 ntAPPRIS P1 BASIC23.27■■□□□ 1.31
SMC1BQ8NDV3 ASL-205ENST00000395332 1622 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
SMC1BQ8NDV3 FCMR-202ENST00000442471 1441 ntTSL 2 BASIC23.26■■□□□ 1.31
SMC1BQ8NDV3 RAB29-205ENST00000446390 1441 ntTSL 2 BASIC23.26■■□□□ 1.31
SMC1BQ8NDV3 TPST1-201ENST00000304842 2116 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
SMC1BQ8NDV3 SRSF11-203ENST00000370951 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC23.26■■□□□ 1.31
SMC1BQ8NDV3 RIOX1-201ENST00000304061 2429 ntAPPRIS P1 BASIC23.26■■□□□ 1.31
SMC1BQ8NDV3 TLCD1-202ENST00000394933 784 ntTSL 2 BASIC23.26■■□□□ 1.31
SMC1BQ8NDV3 AC069368.1-202ENST00000437723 750 ntAPPRIS P1 TSL 5 BASIC23.26■■□□□ 1.31
SMC1BQ8NDV3 AC004975.2-201ENST00000442017 565 ntTSL 5 BASIC23.26■■□□□ 1.31
SMC1BQ8NDV3 TNNT1-204ENST00000585321 995 ntAPPRIS ALT2 TSL 5 BASIC23.26■■□□□ 1.31
SMC1BQ8NDV3 AP002414.4-201ENST00000589764 1148 ntBASIC23.26■■□□□ 1.31
SMC1BQ8NDV3 LINC02084-201ENST00000606069 1096 ntBASIC23.26■■□□□ 1.31
SMC1BQ8NDV3 AC124016.1-202ENST00000609575 619 ntTSL 2 BASIC23.26■■□□□ 1.31
SMC1BQ8NDV3 AC080038.3-201ENST00000623346 1952 ntBASIC23.26■■□□□ 1.31
SMC1BQ8NDV3 LSM14B-201ENST00000279068 2548 ntAPPRIS P1 TSL 5 BASIC23.26■■□□□ 1.31
SMC1BQ8NDV3 PRKRA-203ENST00000432031 1344 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
SMC1BQ8NDV3 AC092384.1-201ENST00000378347 1812 ntTSL 2 BASIC23.26■■□□□ 1.31
SMC1BQ8NDV3 BTBD7-205ENST00000554565 2697 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
SMC1BQ8NDV3 KRT8P8-201ENST00000434750 1448 ntBASIC23.25■■□□□ 1.31
SMC1BQ8NDV3 GPIHBP1-201ENST00000622500 2282 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
SMC1BQ8NDV3 FAM107B-211ENST00000468747 2633 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
SMC1BQ8NDV3 C12orf42-205ENST00000548048 1532 ntAPPRIS ALT2 TSL 5 BASIC23.25■■□□□ 1.31
SMC1BQ8NDV3 PKIB-206ENST00000392490 1811 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
SMC1BQ8NDV3 NICN1-204ENST00000436744 1271 ntTSL 2 BASIC23.25■■□□□ 1.31
SMC1BQ8NDV3 NUTF2-205ENST00000568396 1179 ntAPPRIS P1 TSL 3 BASIC23.25■■□□□ 1.31
SMC1BQ8NDV3 CALM3-211ENST00000598871 561 ntTSL 4 BASIC23.25■■□□□ 1.31
SMC1BQ8NDV3 MAP2K3-215ENST00000627447 351 ntTSL 5 BASIC23.25■■□□□ 1.31
SMC1BQ8NDV3 ZNF76-203ENST00000373953 2716 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
SMC1BQ8NDV3 PEX5-205ENST00000420616 2477 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
SMC1BQ8NDV3 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC23.25■■□□□ 1.31
SMC1BQ8NDV3 RGS6-209ENST00000553525 2005 ntAPPRIS ALT1 TSL 2 BASIC23.25■■□□□ 1.31
SMC1BQ8NDV3 CCNC-207ENST00000518714 1426 ntTSL 5 BASIC23.25■■□□□ 1.31
Retrieved 100 of 98,524 protein–RNA pairs in 20.6 ms