Protein–RNA interactions for Protein: Q8IXF0

NPAS3, Neuronal PAS domain-containing protein 3, humanhuman

Predictions only

Length 933 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS3Q8IXF0 RHEBL1-201ENST00000301068 1210 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
NPAS3Q8IXF0 AC117947.1-201ENST00000427448 529 ntBASIC20.31■□□□□ 0.84
NPAS3Q8IXF0 OOEP-AS1-201ENST00000445350 463 ntTSL 3 BASIC20.31■□□□□ 0.84
NPAS3Q8IXF0 CDKN2AIPNL-202ENST00000458198 1223 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
NPAS3Q8IXF0 WDR45-218ENST00000473974 1077 ntTSL 5 BASIC20.31■□□□□ 0.84
NPAS3Q8IXF0 RBPMS-AS1-202ENST00000519753 1031 ntTSL 5 BASIC20.31■□□□□ 0.84
NPAS3Q8IXF0 RAP1B-229ENST00000543393 874 ntTSL 3 BASIC20.31■□□□□ 0.84
NPAS3Q8IXF0 C16orf74-207ENST00000602914 761 ntAPPRIS ALT2 TSL 2 BASIC20.31■□□□□ 0.84
NPAS3Q8IXF0 AC116562.4-202ENST00000641738 218 ntBASIC20.31■□□□□ 0.84
NPAS3Q8IXF0 AGMAT-201ENST00000375826 2500 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
NPAS3Q8IXF0 SLC25A29-215ENST00000556505 1540 ntTSL 2 BASIC20.31■□□□□ 0.84
NPAS3Q8IXF0 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
NPAS3Q8IXF0 PPM1D-204ENST00000629650 1525 ntTSL 5 BASIC20.31■□□□□ 0.84
NPAS3Q8IXF0 ATP6AP1-201ENST00000369762 2099 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
NPAS3Q8IXF0 LGALS9C-209ENST00000581545 1378 ntTSL 5 BASIC20.31■□□□□ 0.84
NPAS3Q8IXF0 SACM1L-202ENST00000418611 2164 ntTSL 2 BASIC20.31■□□□□ 0.84
NPAS3Q8IXF0 TMEM179-206ENST00000616017 1645 ntBASIC20.31■□□□□ 0.84
NPAS3Q8IXF0 MAP2K2-202ENST00000394867 1471 ntTSL 5 BASIC20.3■□□□□ 0.84
NPAS3Q8IXF0 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
NPAS3Q8IXF0 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC20.3■□□□□ 0.84
NPAS3Q8IXF0 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
NPAS3Q8IXF0 MRPL52-201ENST00000311892 1042 ntTSL 3 BASIC20.3■□□□□ 0.84
NPAS3Q8IXF0 LINC01381-201ENST00000431650 466 ntTSL 3 BASIC20.3■□□□□ 0.84
NPAS3Q8IXF0 PRKCB-209ENST00000498058 480 ntTSL 3 BASIC20.3■□□□□ 0.84
NPAS3Q8IXF0 AC106791.1-202ENST00000508281 1148 ntTSL 2 BASIC20.3■□□□□ 0.84
NPAS3Q8IXF0 AL929554.1-201ENST00000568665 460 ntAPPRIS P1 TSL 3 BASIC20.3■□□□□ 0.84
NPAS3Q8IXF0 AC006504.5-207ENST00000586220 487 ntTSL 2 BASIC20.3■□□□□ 0.84
NPAS3Q8IXF0 TMEM114-203ENST00000620492 945 ntAPPRIS P1 TSL 2 BASIC20.3■□□□□ 0.84
NPAS3Q8IXF0 DLK2-201ENST00000357338 2038 ntAPPRIS P3 TSL 2 BASIC20.3■□□□□ 0.84
NPAS3Q8IXF0 CCNYL1-202ENST00000339882 2619 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
NPAS3Q8IXF0 SERPINH1-212ENST00000530284 1358 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
NPAS3Q8IXF0 FAM151B-201ENST00000282226 1717 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
NPAS3Q8IXF0 ST3GAL4-203ENST00000392669 1724 ntAPPRIS ALT1 TSL 1 (best) BASIC20.3■□□□□ 0.84
NPAS3Q8IXF0 LAYN-202ENST00000375615 1836 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
NPAS3Q8IXF0 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
NPAS3Q8IXF0 EIF5A-204ENST00000416016 1336 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
NPAS3Q8IXF0 SYT15-205ENST00000503753 1331 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
NPAS3Q8IXF0 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
NPAS3Q8IXF0 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC20.29■□□□□ 0.84
NPAS3Q8IXF0 MAGI2-202ENST00000419488 6800 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
NPAS3Q8IXF0 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
NPAS3Q8IXF0 CCDC130-201ENST00000221554 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
NPAS3Q8IXF0 TMEM8A-201ENST00000250930 2346 ntAPPRIS ALT2 TSL 2 BASIC20.29■□□□□ 0.84
NPAS3Q8IXF0 BAD-201ENST00000309032 929 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
NPAS3Q8IXF0 SHBG-203ENST00000416273 1042 ntAPPRIS ALT2 TSL 3 BASIC20.29■□□□□ 0.84
NPAS3Q8IXF0 AC091390.4-202ENST00000476426 537 ntBASIC20.29■□□□□ 0.84
NPAS3Q8IXF0 Z85996.1-201ENST00000494644 937 ntBASIC20.29■□□□□ 0.84
NPAS3Q8IXF0 C12orf76-204ENST00000547573 607 ntTSL 3 BASIC20.29■□□□□ 0.84
NPAS3Q8IXF0 SHBG-215ENST00000575903 1196 ntTSL 3 BASIC20.29■□□□□ 0.84
NPAS3Q8IXF0 CYB561D2-210ENST00000607121 1004 ntTSL 2 BASIC20.29■□□□□ 0.84
NPAS3Q8IXF0 AL138966.2-201ENST00000621997 464 ntBASIC20.29■□□□□ 0.84
NPAS3Q8IXF0 CCDC185-201ENST00000366875 2054 ntAPPRIS P1 BASIC20.29■□□□□ 0.84
NPAS3Q8IXF0 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC20.29■□□□□ 0.84
NPAS3Q8IXF0 DYNLT3-201ENST00000378578 2217 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
NPAS3Q8IXF0 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
NPAS3Q8IXF0 FAM228A-201ENST00000295150 1774 ntAPPRIS P2 TSL 1 (best) BASIC20.29■□□□□ 0.84
NPAS3Q8IXF0 FKBP3-202ENST00000396062 1346 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
NPAS3Q8IXF0 NDUFB9-206ENST00000522532 1319 ntTSL 2 BASIC20.28■□□□□ 0.84
NPAS3Q8IXF0 MCRS1-202ENST00000357123 1428 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
NPAS3Q8IXF0 SLC35A2-217ENST00000635589 1424 ntTSL 2 BASIC20.28■□□□□ 0.84
NPAS3Q8IXF0 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
NPAS3Q8IXF0 WISP2-202ENST00000372865 1518 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
NPAS3Q8IXF0 SAMD10-201ENST00000369886 2181 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
NPAS3Q8IXF0 ASNS-206ENST00000437628 1638 ntTSL 2 BASIC20.28■□□□□ 0.84
NPAS3Q8IXF0 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC20.28■□□□□ 0.84
NPAS3Q8IXF0 NMRAL1-213ENST00000574733 1719 ntAPPRIS P1 TSL 5 BASIC20.28■□□□□ 0.84
NPAS3Q8IXF0 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
NPAS3Q8IXF0 BRSK2-215ENST00000544817 1842 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
NPAS3Q8IXF0 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC20.28■□□□□ 0.84
NPAS3Q8IXF0 TPPP3-201ENST00000290942 1116 ntAPPRIS P1 TSL 2 BASIC20.28■□□□□ 0.84
NPAS3Q8IXF0 CD7-201ENST00000312648 1281 ntAPPRIS P2 TSL 1 (best) BASIC20.28■□□□□ 0.84
NPAS3Q8IXF0 ZNF32-201ENST00000374433 1137 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
NPAS3Q8IXF0 MSLN-201ENST00000382862 2116 ntAPPRIS P3 TSL 5 BASIC20.28■□□□□ 0.84
NPAS3Q8IXF0 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC20.28■□□□□ 0.84
NPAS3Q8IXF0 SLC25A1P2-201ENST00000430693 912 ntBASIC20.28■□□□□ 0.84
NPAS3Q8IXF0 CCR12P-201ENST00000446203 998 ntBASIC20.28■□□□□ 0.84
NPAS3Q8IXF0 ADGRD1-AS1-202ENST00000542980 1277 ntTSL 4 BASIC20.28■□□□□ 0.84
NPAS3Q8IXF0 LINC01238-205ENST00000567549 1107 ntBASIC20.28■□□□□ 0.84
NPAS3Q8IXF0 AC140504.1-202ENST00000568222 652 ntTSL 5 BASIC20.28■□□□□ 0.84
NPAS3Q8IXF0 AC008763.3-201ENST00000597959 777 ntAPPRIS P1 TSL 4 BASIC20.28■□□□□ 0.84
NPAS3Q8IXF0 FP565260.3-205ENST00000620481 816 ntTSL 5 BASIC20.28■□□□□ 0.84
NPAS3Q8IXF0 BPIFB3-201ENST00000375494 1454 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
NPAS3Q8IXF0 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC20.28■□□□□ 0.84
NPAS3Q8IXF0 MXRA8-201ENST00000309212 2273 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
NPAS3Q8IXF0 FBXO17-201ENST00000292852 2386 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
NPAS3Q8IXF0 STK11-205ENST00000586243 2777 ntAPPRIS ALT2 TSL 5 BASIC20.28■□□□□ 0.84
NPAS3Q8IXF0 KCNIP4-206ENST00000447367 1641 ntTSL 5 BASIC20.27■□□□□ 0.84
NPAS3Q8IXF0 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
NPAS3Q8IXF0 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
NPAS3Q8IXF0 HLX-201ENST00000366903 2280 ntAPPRIS P2 TSL 1 (best) BASIC20.27■□□□□ 0.84
NPAS3Q8IXF0 PALM-208ENST00000592155 2272 ntTSL 4 BASIC20.27■□□□□ 0.84
NPAS3Q8IXF0 PMPCA-201ENST00000371717 2174 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
NPAS3Q8IXF0 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC20.27■□□□□ 0.84
NPAS3Q8IXF0 AL136307.1-201ENST00000454882 411 ntTSL 2 BASIC20.27■□□□□ 0.84
NPAS3Q8IXF0 ABHD14B-208ENST00000525795 980 ntAPPRIS P1 TSL 3 BASIC20.27■□□□□ 0.84
NPAS3Q8IXF0 EEF2KMT-206ENST00000587133 873 ntAPPRIS ALT2 TSL 3 BASIC20.27■□□□□ 0.84
NPAS3Q8IXF0 AC139887.4-201ENST00000607877 719 ntBASIC20.27■□□□□ 0.84
NPAS3Q8IXF0 AC064853.5-201ENST00000641976 258 ntAPPRIS P1 BASIC20.27■□□□□ 0.84
NPAS3Q8IXF0 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC20.27■□□□□ 0.84
NPAS3Q8IXF0 ADRA1B-201ENST00000306675 2047 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 26.9 ms