Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 SAXO1-202ENST00000380534 2099 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
HOXC4P09017 APIP-201ENST00000395787 1366 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
HOXC4P09017 GGPS1-206ENST00000488594 1396 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
HOXC4P09017 FAM228A-201ENST00000295150 1774 ntAPPRIS P2 TSL 1 (best) BASIC19.16■□□□□ 0.66
HOXC4P09017 PQLC2-202ENST00000375155 1805 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
HOXC4P09017 TRAK2-202ENST00000430254 1436 ntTSL 2 BASIC19.16■□□□□ 0.66
HOXC4P09017 UBXN11-201ENST00000314675 2254 ntAPPRIS ALT2 TSL 2 BASIC19.16■□□□□ 0.66
HOXC4P09017 PDLIM2-205ENST00000397761 1491 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
HOXC4P09017 NUTF2-201ENST00000219169 2321 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
HOXC4P09017 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC19.15■□□□□ 0.66
HOXC4P09017 POC1A-202ENST00000394970 1999 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
HOXC4P09017 L2HGDH-203ENST00000421284 1958 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
HOXC4P09017 SOCS2-207ENST00000549206 2072 ntAPPRIS P1 TSL 3 BASIC19.15■□□□□ 0.66
HOXC4P09017 GPRIN2-201ENST00000374314 1696 ntAPPRIS P1 BASIC19.15■□□□□ 0.66
HOXC4P09017 TATDN2-201ENST00000287652 5342 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
HOXC4P09017 PLPP2-201ENST00000269812 1228 ntTSL 3 BASIC19.15■□□□□ 0.66
HOXC4P09017 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
HOXC4P09017 ADGRD1-AS1-202ENST00000542980 1277 ntTSL 4 BASIC19.15■□□□□ 0.66
HOXC4P09017 AC006504.5-207ENST00000586220 487 ntTSL 2 BASIC19.15■□□□□ 0.66
HOXC4P09017 FXYD3-214ENST00000605677 633 ntTSL 2 BASIC19.15■□□□□ 0.66
HOXC4P09017 AC011298.2-201ENST00000617989 482 ntBASIC19.15■□□□□ 0.66
HOXC4P09017 MOB3C-202ENST00000319928 2822 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
HOXC4P09017 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC19.15■□□□□ 0.66
HOXC4P09017 CUTC-202ENST00000370476 1346 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
HOXC4P09017 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC19.15■□□□□ 0.66
HOXC4P09017 NF2-201ENST00000334961 2020 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
HOXC4P09017 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
HOXC4P09017 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC19.15■□□□□ 0.66
HOXC4P09017 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC19.15■□□□□ 0.66
HOXC4P09017 IMMP2L-202ENST00000405709 1522 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
HOXC4P09017 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC19.15■□□□□ 0.66
HOXC4P09017 LINC01006-201ENST00000333319 2292 ntBASIC19.14■□□□□ 0.66
HOXC4P09017 AC012414.5-201ENST00000564214 1602 ntTSL 5 BASIC19.14■□□□□ 0.66
HOXC4P09017 WWOX-205ENST00000539474 1670 ntTSL 5 BASIC19.14■□□□□ 0.66
HOXC4P09017 ACY1-215ENST00000636358 1684 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
HOXC4P09017 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC19.14■□□□□ 0.65
HOXC4P09017 NDUFS6-201ENST00000274137 1082 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
HOXC4P09017 DUT-201ENST00000331200 2147 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
HOXC4P09017 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC19.14■□□□□ 0.65
HOXC4P09017 PDCD6-206ENST00000507528 1088 ntAPPRIS ALT1 TSL 1 (best) BASIC19.14■□□□□ 0.65
HOXC4P09017 AC008649.1-201ENST00000589557 516 ntTSL 2 BASIC19.14■□□□□ 0.65
HOXC4P09017 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC19.14■□□□□ 0.65
HOXC4P09017 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
HOXC4P09017 ABHD5-205ENST00000458276 1690 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
HOXC4P09017 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC19.14■□□□□ 0.65
HOXC4P09017 FAM57B-204ENST00000564806 1710 ntTSL 2 BASIC19.14■□□□□ 0.65
HOXC4P09017 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC19.14■□□□□ 0.65
HOXC4P09017 STARD10-201ENST00000334805 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
HOXC4P09017 BEST4-201ENST00000372207 2047 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
HOXC4P09017 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
HOXC4P09017 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC19.13■□□□□ 0.65
HOXC4P09017 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC19.13■□□□□ 0.65
HOXC4P09017 ISLR2-202ENST00000419208 2306 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
HOXC4P09017 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
HOXC4P09017 EMC6-201ENST00000248378 653 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
HOXC4P09017 ANK1-206ENST00000348036 622 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
HOXC4P09017 C20orf166-AS1-202ENST00000436101 761 ntTSL 5 BASIC19.13■□□□□ 0.65
HOXC4P09017 AC097488.1-201ENST00000507834 756 ntBASIC19.13■□□□□ 0.65
HOXC4P09017 AC015712.4-203ENST00000559673 630 ntTSL 3 BASIC19.13■□□□□ 0.65
HOXC4P09017 NAPSB-206ENST00000562112 1266 ntBASIC19.13■□□□□ 0.65
HOXC4P09017 AL590627.2-201ENST00000637510 144 ntTSL 5 BASIC19.13■□□□□ 0.65
HOXC4P09017 KRT8P9-201ENST00000558927 1449 ntBASIC19.13■□□□□ 0.65
HOXC4P09017 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC19.13■□□□□ 0.65
HOXC4P09017 SLC22A17-211ENST00000637426 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
HOXC4P09017 SLC38A11-203ENST00000409149 1621 ntAPPRIS P2 TSL 2 BASIC19.13■□□□□ 0.65
HOXC4P09017 TSPAN15-201ENST00000373290 1698 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
HOXC4P09017 PPP5C-202ENST00000391919 1929 ntTSL 5 BASIC19.13■□□□□ 0.65
HOXC4P09017 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
HOXC4P09017 PIGQ-206ENST00000422307 2052 ntTSL 3 BASIC19.13■□□□□ 0.65
HOXC4P09017 APBB3-203ENST00000357560 2218 ntAPPRIS P3 TSL 5 BASIC19.13■□□□□ 0.65
HOXC4P09017 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC19.13■□□□□ 0.65
HOXC4P09017 ZNF707-201ENST00000358656 2183 ntAPPRIS P1 TSL 2 BASIC19.12■□□□□ 0.65
HOXC4P09017 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
HOXC4P09017 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC19.12■□□□□ 0.65
HOXC4P09017 SLC7A10-201ENST00000253188 1946 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
HOXC4P09017 HMOX1-201ENST00000216117 1822 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
HOXC4P09017 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC19.12■□□□□ 0.65
HOXC4P09017 CAMK4-210ENST00000512453 1640 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
HOXC4P09017 ACOT2-204ENST00000613168 1553 ntAPPRIS P5 TSL 1 (best) BASIC19.12■□□□□ 0.65
HOXC4P09017 BTBD1-202ENST00000379403 1467 ntTSL 5 BASIC19.12■□□□□ 0.65
HOXC4P09017 NFKBIL1-201ENST00000376145 1401 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
HOXC4P09017 SNAPIN-201ENST00000368685 1030 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
HOXC4P09017 DERL1-203ENST00000419562 918 ntTSL 2 BASIC19.12■□□□□ 0.65
HOXC4P09017 FAM210CP-201ENST00000445714 574 ntBASIC19.12■□□□□ 0.65
HOXC4P09017 AC137630.1-201ENST00000452042 782 ntTSL 4 BASIC19.12■□□□□ 0.65
HOXC4P09017 TAPBP-236ENST00000456592 817 ntTSL 5 BASIC19.12■□□□□ 0.65
HOXC4P09017 AC008040.2-201ENST00000461049 708 ntBASIC19.12■□□□□ 0.65
HOXC4P09017 CLDND2-203ENST00000601435 575 ntAPPRIS P1 TSL 3 BASIC19.12■□□□□ 0.65
HOXC4P09017 AL391422.3-201ENST00000603791 2761 ntBASIC19.12■□□□□ 0.65
HOXC4P09017 EFS-203ENST00000429593 2610 ntTSL 2 BASIC19.12■□□□□ 0.65
HOXC4P09017 IRX4-206ENST00000513692 2391 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
HOXC4P09017 ANKRD18DP-204ENST00000455355 1975 ntBASIC19.12■□□□□ 0.65
HOXC4P09017 LINC01521-201ENST00000504184 1943 ntBASIC19.12■□□□□ 0.65
HOXC4P09017 TCF7L1-201ENST00000282111 2968 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
HOXC4P09017 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
HOXC4P09017 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC19.11■□□□□ 0.65
HOXC4P09017 BPIFB3-201ENST00000375494 1454 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
HOXC4P09017 CTDSP2-204ENST00000548823 1368 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
HOXC4P09017 AC096733.2-201ENST00000609937 1394 ntBASIC19.11■□□□□ 0.65
HOXC4P09017 TPSB2-203ENST00000612142 1352 ntAPPRIS P5 TSL 1 (best) BASIC19.11■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 17.5 ms