Protein–RNA interactions for Protein: O75127

PTCD1, Pentatricopeptide repeat-containing protein 1, mitochondrial, humanhuman

Known RBP Predictions only

Length 700 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD1O75127 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC25.19■■□□□ 1.62
PTCD1O75127 DENND5A-201ENST00000328194 5031 ntAPPRIS P1 TSL 1 (best) BASIC25.19■■□□□ 1.62
PTCD1O75127 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC25.19■■□□□ 1.62
PTCD1O75127 SHBG-203ENST00000416273 1042 ntAPPRIS ALT2 TSL 3 BASIC25.19■■□□□ 1.62
PTCD1O75127 OOEP-AS1-201ENST00000445350 463 ntTSL 3 BASIC25.19■■□□□ 1.62
PTCD1O75127 Z85996.1-201ENST00000494644 937 ntBASIC25.19■■□□□ 1.62
PTCD1O75127 AC140504.1-202ENST00000568222 652 ntTSL 5 BASIC25.19■■□□□ 1.62
PTCD1O75127 AKTIP-212ENST00000570004 1162 ntAPPRIS P3 TSL 1 (best) BASIC25.19■■□□□ 1.62
PTCD1O75127 SHBG-215ENST00000575903 1196 ntTSL 3 BASIC25.19■■□□□ 1.62
PTCD1O75127 EEF2KMT-206ENST00000587133 873 ntAPPRIS ALT2 TSL 3 BASIC25.19■■□□□ 1.62
PTCD1O75127 AL138966.2-201ENST00000621997 464 ntBASIC25.19■■□□□ 1.62
PTCD1O75127 ASRGL1-211ENST00000628829 1161 ntTSL 1 (best) BASIC25.19■■□□□ 1.62
PTCD1O75127 RASSF7-204ENST00000431809 1745 ntAPPRIS ALT2 TSL 5 BASIC25.19■■□□□ 1.62
PTCD1O75127 MYBL2-201ENST00000217026 2639 ntAPPRIS P1 TSL 1 (best) BASIC25.19■■□□□ 1.62
PTCD1O75127 ZIC4-209ENST00000473123 1481 ntAPPRIS P1 TSL 2 BASIC25.19■■□□□ 1.62
PTCD1O75127 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC25.19■■□□□ 1.62
PTCD1O75127 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC25.19■■□□□ 1.62
PTCD1O75127 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC25.18■■□□□ 1.62
PTCD1O75127 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC25.18■■□□□ 1.62
PTCD1O75127 FKBP3-202ENST00000396062 1346 ntAPPRIS P1 TSL 1 (best) BASIC25.18■■□□□ 1.62
PTCD1O75127 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC25.18■■□□□ 1.62
PTCD1O75127 WISP2-202ENST00000372865 1518 ntTSL 1 (best) BASIC25.18■■□□□ 1.62
PTCD1O75127 GAS2L1-207ENST00000611648 2482 ntAPPRIS P1 TSL 2 BASIC25.18■■□□□ 1.62
PTCD1O75127 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC25.18■■□□□ 1.62
PTCD1O75127 BAD-201ENST00000309032 929 ntAPPRIS P1 TSL 1 (best) BASIC25.18■■□□□ 1.62
PTCD1O75127 UQCRQ-201ENST00000378665 586 ntAPPRIS P1 TSL 1 (best) BASIC25.18■■□□□ 1.62
PTCD1O75127 LINC01381-201ENST00000431650 466 ntTSL 3 BASIC25.18■■□□□ 1.62
PTCD1O75127 SSSCA1-206ENST00000531405 879 ntTSL 2 BASIC25.18■■□□□ 1.62
PTCD1O75127 AC008763.3-201ENST00000597959 777 ntAPPRIS P1 TSL 4 BASIC25.18■■□□□ 1.62
PTCD1O75127 AL358472.4-201ENST00000633140 710 ntBASIC25.18■■□□□ 1.62
PTCD1O75127 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC25.18■■□□□ 1.62
PTCD1O75127 CREB3-201ENST00000353704 1832 ntAPPRIS P1 TSL 1 (best) BASIC25.18■■□□□ 1.62
PTCD1O75127 DBNL-210ENST00000448521 1808 ntAPPRIS ALT1 TSL 1 (best) BASIC25.18■■□□□ 1.62
PTCD1O75127 MEDAG-201ENST00000380482 2374 ntAPPRIS P1 TSL 1 (best) BASIC25.18■■□□□ 1.62
PTCD1O75127 SLC35A2-217ENST00000635589 1424 ntTSL 2 BASIC25.18■■□□□ 1.62
PTCD1O75127 SERPINH1-212ENST00000530284 1358 ntTSL 1 (best) BASIC25.18■■□□□ 1.62
PTCD1O75127 LGALS9C-209ENST00000581545 1378 ntTSL 5 BASIC25.18■■□□□ 1.62
PTCD1O75127 RTP5-201ENST00000343216 2296 ntAPPRIS P1 TSL 1 (best) BASIC25.17■■□□□ 1.62
PTCD1O75127 KLHDC4-201ENST00000270583 1886 ntAPPRIS P3 TSL 1 (best) BASIC25.17■■□□□ 1.62
PTCD1O75127 NDUFB9-206ENST00000522532 1319 ntTSL 2 BASIC25.17■■□□□ 1.62
PTCD1O75127 POC1A-202ENST00000394970 1999 ntTSL 1 (best) BASIC25.17■■□□□ 1.62
PTCD1O75127 TYMSOS-201ENST00000323813 844 ntTSL 1 (best) BASIC25.17■■□□□ 1.62
PTCD1O75127 AL136307.1-201ENST00000454882 411 ntTSL 2 BASIC25.17■■□□□ 1.62
PTCD1O75127 AP003501.2-201ENST00000524433 477 ntTSL 4 BASIC25.17■■□□□ 1.62
PTCD1O75127 USF2-205ENST00000594064 1179 ntTSL 2 BASIC25.17■■□□□ 1.62
PTCD1O75127 ZNF667-AS1-208ENST00000594783 475 ntTSL 3 BASIC25.17■■□□□ 1.62
PTCD1O75127 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC25.17■■□□□ 1.62
PTCD1O75127 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC25.17■■□□□ 1.62
PTCD1O75127 TMEM230-206ENST00000379283 1660 ntAPPRIS P1 TSL 3 BASIC25.17■■□□□ 1.62
PTCD1O75127 FAM193B-217ENST00000514747 2913 ntAPPRIS P1 TSL 5 BASIC25.16■■□□□ 1.62
PTCD1O75127 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC25.16■■□□□ 1.62
PTCD1O75127 BPIFB3-201ENST00000375494 1454 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
PTCD1O75127 DOC2A-209ENST00000564979 1630 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
PTCD1O75127 DMRTB1-201ENST00000371445 1910 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
PTCD1O75127 MRPL52-201ENST00000311892 1042 ntTSL 3 BASIC25.16■■□□□ 1.62
PTCD1O75127 KRTAP5-3-201ENST00000399685 899 ntAPPRIS P1 BASIC25.16■■□□□ 1.62
PTCD1O75127 CD70-202ENST00000423145 881 ntTSL 2 BASIC25.16■■□□□ 1.62
PTCD1O75127 ZNF821-202ENST00000425432 2000 ntAPPRIS P1 TSL 5 BASIC25.16■■□□□ 1.62
PTCD1O75127 AC007663.1-201ENST00000438948 1240 ntBASIC25.16■■□□□ 1.62
PTCD1O75127 CCR12P-201ENST00000446203 998 ntBASIC25.16■■□□□ 1.62
PTCD1O75127 AC002467.1-201ENST00000457510 657 ntTSL 3 BASIC25.16■■□□□ 1.62
PTCD1O75127 ADGRD1-AS1-202ENST00000542980 1277 ntTSL 4 BASIC25.16■■□□□ 1.62
PTCD1O75127 ULK4P3-205ENST00000568486 1158 ntTSL 1 (best) BASIC25.16■■□□□ 1.62
PTCD1O75127 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC25.16■■□□□ 1.62
PTCD1O75127 AL137060.1-201ENST00000618151 2648 ntBASIC25.16■■□□□ 1.62
PTCD1O75127 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
PTCD1O75127 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
PTCD1O75127 GYG1-202ENST00000345003 2052 ntTSL 1 (best) BASIC25.16■■□□□ 1.62
PTCD1O75127 LINC01465-201ENST00000408887 1940 ntBASIC25.16■■□□□ 1.62
PTCD1O75127 ME2-216ENST00000639850 2331 ntTSL 5 BASIC25.15■■□□□ 1.62
PTCD1O75127 BX119927.1-201ENST00000636596 1552 ntBASIC25.15■■□□□ 1.62
PTCD1O75127 KIAA1456-201ENST00000400069 1982 ntTSL 2 BASIC25.15■■□□□ 1.62
PTCD1O75127 CIZ1-203ENST00000357558 2907 ntAPPRIS ALT2 TSL 5 BASIC25.15■■□□□ 1.62
PTCD1O75127 HLA-DRB1-201ENST00000360004 1229 ntAPPRIS P1 BASIC25.15■■□□□ 1.62
PTCD1O75127 AIF1L-203ENST00000372298 849 ntTSL 3 BASIC25.15■■□□□ 1.62
PTCD1O75127 SNCB-205ENST00000510387 730 ntAPPRIS P1 TSL 2 BASIC25.15■■□□□ 1.62
PTCD1O75127 BNIP3L-206ENST00000523515 915 ntTSL 2 BASIC25.15■■□□□ 1.62
PTCD1O75127 RAB11B-AS1-201ENST00000593581 1013 ntTSL 1 (best) BASIC25.15■■□□□ 1.62
PTCD1O75127 SMIM20-205ENST00000614775 1190 ntTSL 5 BASIC25.15■■□□□ 1.62
PTCD1O75127 FP565260.3-205ENST00000620481 816 ntTSL 5 BASIC25.15■■□□□ 1.62
PTCD1O75127 TMEM114-203ENST00000620492 945 ntAPPRIS P1 TSL 2 BASIC25.15■■□□□ 1.62
PTCD1O75127 PRLHR-202ENST00000636925 1275 ntAPPRIS P1 BASIC25.15■■□□□ 1.62
PTCD1O75127 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
PTCD1O75127 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
PTCD1O75127 PPHLN1-213ENST00000549190 1777 ntTSL 5 BASIC25.15■■□□□ 1.62
PTCD1O75127 ASAP2-201ENST00000281419 5712 ntAPPRIS P3 TSL 1 (best) BASIC25.15■■□□□ 1.62
PTCD1O75127 MED25-212ENST00000618715 1467 ntTSL 5 BASIC25.15■■□□□ 1.62
PTCD1O75127 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC25.14■■□□□ 1.62
PTCD1O75127 CENPH-206ENST00000515001 1305 ntTSL 2 BASIC25.14■■□□□ 1.62
PTCD1O75127 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC25.14■■□□□ 1.62
PTCD1O75127 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC25.14■■□□□ 1.62
PTCD1O75127 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC25.14■■□□□ 1.62
PTCD1O75127 CYP2D6-201ENST00000359033 1433 ntTSL 1 (best) BASIC25.14■■□□□ 1.62
PTCD1O75127 KRT8P8-201ENST00000434750 1448 ntBASIC25.14■■□□□ 1.62
PTCD1O75127 MED26-207ENST00000611692 1444 ntTSL 1 (best) BASIC25.14■■□□□ 1.62
PTCD1O75127 COPE-203ENST00000351079 907 ntTSL 2 BASIC25.14■■□□□ 1.62
PTCD1O75127 ISCU-202ENST00000392807 1069 ntTSL 1 (best) BASIC25.14■■□□□ 1.62
PTCD1O75127 EEF1D-202ENST00000395119 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC25.14■■□□□ 1.62
PTCD1O75127 SLC25A1P2-201ENST00000430693 912 ntBASIC25.14■■□□□ 1.62
PTCD1O75127 ISCU-203ENST00000431221 799 ntTSL 2 BASIC25.14■■□□□ 1.62
Retrieved 100 of 98,524 protein–RNA pairs in 16.7 ms