Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 AC103952.1-201ENST00000521872 590 ntTSL 3 BASIC7.56□□□□□ -1.2
TRAIPQ9BWF2 REXO2-218ENST00000544827 880 ntTSL 3 BASIC7.56□□□□□ -1.2
TRAIPQ9BWF2 LINC02375-201ENST00000545739 852 ntTSL 1 (best) BASIC7.56□□□□□ -1.2
TRAIPQ9BWF2 PPIAP6-201ENST00000557078 499 ntBASIC7.56□□□□□ -1.2
TRAIPQ9BWF2 MIR6889-201ENST00000613185 59 ntBASIC7.56□□□□□ -1.2
TRAIPQ9BWF2 AC008083.4-201ENST00000615076 444 ntBASIC7.56□□□□□ -1.2
TRAIPQ9BWF2 AL450226.2-201ENST00000622913 439 ntBASIC7.56□□□□□ -1.2
TRAIPQ9BWF2 AL357060.1-201ENST00000638039 977 ntTSL 5 BASIC7.56□□□□□ -1.2
TRAIPQ9BWF2 PDE4DIP-204ENST00000369351 4922 ntTSL 1 (best) BASIC7.56□□□□□ -1.2
TRAIPQ9BWF2 TEDDM1-201ENST00000367565 2500 ntAPPRIS P1 BASIC7.56□□□□□ -1.2
TRAIPQ9BWF2 LAMB4-201ENST00000205386 5857 ntAPPRIS P1 TSL 1 (best) BASIC7.56□□□□□ -1.2
TRAIPQ9BWF2 KAT6B-203ENST00000372714 5892 ntAPPRIS ALT2 TSL 5 BASIC7.56□□□□□ -1.2
TRAIPQ9BWF2 FOXJ3-209ENST00000545068 5165 ntAPPRIS P3 TSL 5 BASIC7.56□□□□□ -1.2
TRAIPQ9BWF2 ADAMTS3-204ENST00000622135 4479 ntAPPRIS P1 TSL 2 BASIC7.56□□□□□ -1.2
TRAIPQ9BWF2 SEMA5A-AS1-201ENST00000510879 1679 ntTSL 2 BASIC7.56□□□□□ -1.2
TRAIPQ9BWF2 PTPRO-208ENST00000542557 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC7.56□□□□□ -1.2
TRAIPQ9BWF2 RGS13-201ENST00000391995 1505 ntAPPRIS P1 TSL 1 (best) BASIC7.56□□□□□ -1.2
TRAIPQ9BWF2 RPL7-204ENST00000396467 1526 ntTSL 3 BASIC7.56□□□□□ -1.2
TRAIPQ9BWF2 BRCA1-210ENST00000471181 5936 ntTSL 1 (best) BASIC7.56□□□□□ -1.2
TRAIPQ9BWF2 KIF18A-201ENST00000263181 3568 ntAPPRIS P1 TSL 1 (best) BASIC7.56□□□□□ -1.2
TRAIPQ9BWF2 TCP11X1-202ENST00000622971 1372 ntBASIC7.56□□□□□ -1.2
TRAIPQ9BWF2 SLC17A8-201ENST00000323346 3983 ntAPPRIS P1 TSL 1 (best) BASIC7.56□□□□□ -1.2
TRAIPQ9BWF2 FGA-201ENST00000302053 3678 ntAPPRIS P1 TSL 2 BASIC7.56□□□□□ -1.2
TRAIPQ9BWF2 CCDC171-201ENST00000380701 6512 ntAPPRIS P1 TSL 1 (best) BASIC7.56□□□□□ -1.2
TRAIPQ9BWF2 GPR89A-213ENST00000534502 1644 ntTSL 2 BASIC7.56□□□□□ -1.2
TRAIPQ9BWF2 CEP112-204ENST00000537949 2847 ntTSL 1 (best) BASIC7.56□□□□□ -1.2
TRAIPQ9BWF2 CLUL1-201ENST00000338387 1897 ntAPPRIS P1 TSL 1 (best) BASIC7.55□□□□□ -1.2
TRAIPQ9BWF2 NARS2-204ENST00000528850 2137 ntTSL 5 BASIC7.55□□□□□ -1.2
TRAIPQ9BWF2 MTERF1-201ENST00000351870 1997 ntAPPRIS P3 TSL 1 (best) BASIC7.55□□□□□ -1.2
TRAIPQ9BWF2 KCNJ1-205ENST00000392666 2621 ntAPPRIS P1 TSL 1 (best) BASIC7.55□□□□□ -1.2
TRAIPQ9BWF2 AC019072.1-201ENST00000604535 1551 ntBASIC7.55□□□□□ -1.2
TRAIPQ9BWF2 TIAL1-203ENST00000369093 5072 ntTSL 2 BASIC7.55□□□□□ -1.2
TRAIPQ9BWF2 PHLDB2-202ENST00000393925 5543 ntAPPRIS P1 TSL 1 (best) BASIC7.55□□□□□ -1.2
TRAIPQ9BWF2 PLXNA4-201ENST00000321063 13061 ntAPPRIS P1 TSL 5 BASIC7.55□□□□□ -1.2
TRAIPQ9BWF2 DLC1-215ENST00000520226 3556 ntTSL 2 BASIC7.55□□□□□ -1.2
TRAIPQ9BWF2 RPS29-201ENST00000245458 296 ntAPPRIS P1 TSL 1 (best) BASIC7.55□□□□□ -1.2
TRAIPQ9BWF2 STARD6-201ENST00000307844 663 ntAPPRIS P1 TSL 1 (best) BASIC7.55□□□□□ -1.2
TRAIPQ9BWF2 RNU4-24P-201ENST00000364565 139 ntBASIC7.55□□□□□ -1.2
TRAIPQ9BWF2 C1orf194-202ENST00000369945 534 ntTSL 5 BASIC7.55□□□□□ -1.2
TRAIPQ9BWF2 RNU6-1122P-201ENST00000384449 107 ntBASIC7.55□□□□□ -1.2
TRAIPQ9BWF2 TOMM6-202ENST00000398884 637 ntAPPRIS P1 TSL 1 (best) BASIC7.55□□□□□ -1.2
TRAIPQ9BWF2 AC099535.1-201ENST00000408928 371 ntBASIC7.55□□□□□ -1.2
TRAIPQ9BWF2 RN7SKP146-201ENST00000410242 334 ntBASIC7.55□□□□□ -1.2
TRAIPQ9BWF2 AC004870.3-202ENST00000412996 432 ntTSL 3 BASIC7.55□□□□□ -1.2
TRAIPQ9BWF2 RPS6P23-201ENST00000413224 722 ntBASIC7.55□□□□□ -1.2
TRAIPQ9BWF2 LINC01058-201ENST00000420694 448 ntTSL 5 BASIC7.55□□□□□ -1.2
TRAIPQ9BWF2 AC000089.1-201ENST00000424559 801 ntBASIC7.55□□□□□ -1.2
TRAIPQ9BWF2 CCNB1IP1P1-201ENST00000428976 839 ntBASIC7.55□□□□□ -1.2
TRAIPQ9BWF2 SPINK8-201ENST00000434006 444 ntAPPRIS P1 TSL 3 BASIC7.55□□□□□ -1.2
TRAIPQ9BWF2 AC096638.2-201ENST00000434965 711 ntBASIC7.55□□□□□ -1.2
TRAIPQ9BWF2 MTCO2P16-201ENST00000436962 677 ntBASIC7.55□□□□□ -1.2
TRAIPQ9BWF2 RPEP4-201ENST00000437636 602 ntBASIC7.55□□□□□ -1.2
TRAIPQ9BWF2 AC083855.1-201ENST00000440041 258 ntBASIC7.55□□□□□ -1.2
TRAIPQ9BWF2 RPL12P49-201ENST00000441100 121 ntBASIC7.55□□□□□ -1.2
TRAIPQ9BWF2 OSBPL10-AS1-206ENST00000447181 575 ntTSL 4 BASIC7.55□□□□□ -1.2
TRAIPQ9BWF2 PPIA-203ENST00000451562 544 ntTSL 2 BASIC7.55□□□□□ -1.2
TRAIPQ9BWF2 WDR11-AS1-201ENST00000451706 1108 ntTSL 1 (best) BASIC7.55□□□□□ -1.2
TRAIPQ9BWF2 AL034369.1-201ENST00000453808 477 ntBASIC7.55□□□□□ -1.2
TRAIPQ9BWF2 RPL21P71-201ENST00000465598 459 ntBASIC7.55□□□□□ -1.2
TRAIPQ9BWF2 ZNF286A-205ENST00000472486 827 ntTSL 2 BASIC7.55□□□□□ -1.2
TRAIPQ9BWF2 RN7SL379P-201ENST00000479912 293 ntBASIC7.55□□□□□ -1.2
TRAIPQ9BWF2 F11-205ENST00000492972 1204 ntTSL 2 BASIC7.55□□□□□ -1.2
TRAIPQ9BWF2 LINC01322-202ENST00000494915 594 ntTSL 4 BASIC7.55□□□□□ -1.2
TRAIPQ9BWF2 AC080014.1-201ENST00000496877 1201 ntBASIC7.55□□□□□ -1.2
TRAIPQ9BWF2 SUB1-203ENST00000502897 562 ntAPPRIS P1 TSL 4 BASIC7.55□□□□□ -1.2
TRAIPQ9BWF2 AC122718.2-201ENST00000505325 591 ntBASIC7.55□□□□□ -1.2
TRAIPQ9BWF2 AC021088.1-201ENST00000506519 805 ntTSL 3 BASIC7.55□□□□□ -1.2
TRAIPQ9BWF2 AC026785.3-201ENST00000511182 285 ntTSL 2 BASIC7.55□□□□□ -1.2
TRAIPQ9BWF2 SUB1-211ENST00000512913 684 ntAPPRIS P1 TSL 2 BASIC7.55□□□□□ -1.2
TRAIPQ9BWF2 AC008691.1-202ENST00000521472 811 ntTSL 3 BASIC7.55□□□□□ -1.2
TRAIPQ9BWF2 AP001205.1-201ENST00000521625 449 ntTSL 3 BASIC7.55□□□□□ -1.2
TRAIPQ9BWF2 GTF2H1-208ENST00000526630 932 ntTSL 2 BASIC7.55□□□□□ -1.2
TRAIPQ9BWF2 PSMA6-204ENST00000553809 879 ntAPPRIS ALT1 TSL 3 BASIC7.55□□□□□ -1.2
TRAIPQ9BWF2 PSMA6-214ENST00000556506 763 ntTSL 5 BASIC7.55□□□□□ -1.2
TRAIPQ9BWF2 LINC01491-201ENST00000558434 505 ntTSL 3 BASIC7.55□□□□□ -1.2
TRAIPQ9BWF2 RAB27A-205ENST00000564609 1057 ntAPPRIS P1 TSL 1 (best) BASIC7.55□□□□□ -1.2
TRAIPQ9BWF2 RN7SL66P-201ENST00000582099 264 ntBASIC7.55□□□□□ -1.2
TRAIPQ9BWF2 PPP4R1-AS1-201ENST00000582435 379 ntTSL 2 BASIC7.55□□□□□ -1.2
TRAIPQ9BWF2 AC090227.2-201ENST00000591105 340 ntTSL 5 BASIC7.55□□□□□ -1.2
TRAIPQ9BWF2 AC012594.1-252ENST00000595011 876 ntTSL 5 BASIC7.55□□□□□ -1.2
TRAIPQ9BWF2 RBM12B-AS1-201ENST00000623283 653 ntBASIC7.55□□□□□ -1.2
TRAIPQ9BWF2 AC091965.5-201ENST00000624785 342 ntBASIC7.55□□□□□ -1.2
TRAIPQ9BWF2 LINC01361-202ENST00000452834 1526 ntTSL 1 (best) BASIC7.55□□□□□ -1.2
TRAIPQ9BWF2 REST-201ENST00000309042 7300 ntAPPRIS P1 TSL 1 (best) BASIC7.55□□□□□ -1.2
TRAIPQ9BWF2 PTPRT-209ENST00000612229 11285 ntTSL 5 BASIC7.55□□□□□ -1.2
TRAIPQ9BWF2 PNLIPRP3-201ENST00000369230 2354 ntAPPRIS P1 TSL 1 (best) BASIC7.55□□□□□ -1.2
TRAIPQ9BWF2 MYO5A-209ENST00000553916 5989 ntTSL 5 BASIC7.55□□□□□ -1.2
TRAIPQ9BWF2 AAK1-203ENST00000409085 11345 ntAPPRIS P1 TSL 5 BASIC7.55□□□□□ -1.2
TRAIPQ9BWF2 AP005432.1-201ENST00000580891 3485 ntBASIC7.55□□□□□ -1.2
TRAIPQ9BWF2 STMN2-201ENST00000220876 2223 ntAPPRIS P1 TSL 1 (best) BASIC7.55□□□□□ -1.2
TRAIPQ9BWF2 ARID5B-201ENST00000279873 7891 ntAPPRIS P1 TSL 1 (best) BASIC7.55□□□□□ -1.2
TRAIPQ9BWF2 TPTE2P2-201ENST00000403471 1466 ntBASIC7.55□□□□□ -1.2
TRAIPQ9BWF2 GABRA2-215ENST00000540012 2588 ntTSL 5 BASIC7.55□□□□□ -1.2
TRAIPQ9BWF2 PMFBP1-202ENST00000355636 3501 ntAPPRIS ALT2 TSL 5 BASIC7.55□□□□□ -1.2
TRAIPQ9BWF2 UIMC1-207ENST00000506128 1945 ntTSL 1 (best) BASIC7.54□□□□□ -1.2
TRAIPQ9BWF2 BIRC6-201ENST00000421745 15703 ntAPPRIS P1 TSL 1 (best) BASIC7.54□□□□□ -1.2
TRAIPQ9BWF2 NRCAM-201ENST00000351718 6228 ntAPPRIS P3 TSL 1 (best) BASIC7.54□□□□□ -1.2
TRAIPQ9BWF2 GUSBP1-205ENST00000607545 4157 ntTSL 2 BASIC7.54□□□□□ -1.2
TRAIPQ9BWF2 SLC3A1-206ENST00000409740 1418 ntTSL 1 (best) BASIC7.54□□□□□ -1.2
TRAIPQ9BWF2 TRIM49D1-203ENST00000605881 1442 ntAPPRIS ALT2 TSL 1 (best) BASIC7.54□□□□□ -1.2
Retrieved 100 of 98,524 protein–RNA pairs in 76 ms