Protein–RNA interactions for Protein: Q8IV63

VRK3, Inactive serine/threonine-protein kinase VRK3, humanhuman

Predictions only

Length 474 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3Q8IV63 MTND4P33-201ENST00000556706 766 ntBASIC5.82□□□□□ -1.48
VRK3Q8IV63 AC079075.2-201ENST00000557964 449 ntTSL 4 BASIC5.82□□□□□ -1.48
VRK3Q8IV63 USP3-AS1-202ENST00000559357 455 ntTSL 2 BASIC5.82□□□□□ -1.48
VRK3Q8IV63 LCMT1-AS1-204ENST00000569920 474 ntTSL 2 BASIC5.82□□□□□ -1.48
VRK3Q8IV63 AC090415.2-201ENST00000584078 374 ntTSL 3 BASIC5.82□□□□□ -1.48
VRK3Q8IV63 MOCS2-210ENST00000584946 736 ntTSL 5 BASIC5.82□□□□□ -1.48
VRK3Q8IV63 AC098617.1-205ENST00000595918 1032 ntTSL 5 BASIC5.82□□□□□ -1.48
VRK3Q8IV63 AL360219.1-201ENST00000610230 366 ntBASIC5.82□□□□□ -1.48
VRK3Q8IV63 AL352984.2-202ENST00000613699 155 ntBASIC5.82□□□□□ -1.48
VRK3Q8IV63 AP003789.1-201ENST00000617737 605 ntBASIC5.82□□□□□ -1.48
VRK3Q8IV63 AC245014.3-201ENST00000618589 347 ntBASIC5.82□□□□□ -1.48
VRK3Q8IV63 OR8A1-204ENST00000642111 1145 ntBASIC5.82□□□□□ -1.48
VRK3Q8IV63 NEGR1-202ENST00000357731 12811 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
VRK3Q8IV63 ANGPTL5-201ENST00000334289 2368 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
VRK3Q8IV63 THAP12P9-201ENST00000503971 2360 ntBASIC5.82□□□□□ -1.48
VRK3Q8IV63 AC130304.1-201ENST00000622942 2385 ntBASIC5.82□□□□□ -1.48
VRK3Q8IV63 MIR4435-2HG-207ENST00000439362 1522 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
VRK3Q8IV63 TEX41-210ENST00000451774 2098 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
VRK3Q8IV63 FAM197Y8-201ENST00000426661 2340 ntTSL 2 BASIC5.82□□□□□ -1.48
VRK3Q8IV63 FAM197Y6-202ENST00000442145 2340 ntTSL 2 BASIC5.82□□□□□ -1.48
VRK3Q8IV63 ADAM20-201ENST00000256389 2795 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
VRK3Q8IV63 ZFAND6-213ENST00000559835 1446 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
VRK3Q8IV63 DNAJC16-202ENST00000375847 6069 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
VRK3Q8IV63 RBM41-201ENST00000372479 1662 ntAPPRIS P3 TSL 1 (best) BASIC5.82□□□□□ -1.48
VRK3Q8IV63 AC010329.1-201ENST00000593903 8328 ntBASIC5.82□□□□□ -1.48
VRK3Q8IV63 NBPF26-201ENST00000609741 3671 ntTSL 5 BASIC5.81□□□□□ -1.48
VRK3Q8IV63 AP000526.1-201ENST00000603308 1388 ntBASIC5.81□□□□□ -1.48
VRK3Q8IV63 DOCK9-208ENST00000448493 7887 ntAPPRIS ALT2 TSL 5 BASIC5.81□□□□□ -1.48
VRK3Q8IV63 C16orf87-202ENST00000394806 6640 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
VRK3Q8IV63 EEF1A1P21-201ENST00000512363 1344 ntBASIC5.81□□□□□ -1.48
VRK3Q8IV63 OR2H1-201ENST00000377132 2253 ntAPPRIS P1 BASIC5.81□□□□□ -1.48
VRK3Q8IV63 TMEM133-201ENST00000303130 1953 ntAPPRIS P1 BASIC5.81□□□□□ -1.48
VRK3Q8IV63 MT4-201ENST00000219162 294 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
VRK3Q8IV63 RNA5SP477-201ENST00000362639 119 ntBASIC5.81□□□□□ -1.48
VRK3Q8IV63 RNA5SP433-201ENST00000364491 114 ntBASIC5.81□□□□□ -1.48
VRK3Q8IV63 HTN3-201ENST00000381057 493 ntAPPRIS ALT2 TSL 2 BASIC5.81□□□□□ -1.48
VRK3Q8IV63 Y_RNA.619-201ENST00000410951 90 ntBASIC5.81□□□□□ -1.48
VRK3Q8IV63 AC002456.1-203ENST00000412669 449 ntTSL 3 BASIC5.81□□□□□ -1.48
VRK3Q8IV63 AC093158.1-201ENST00000415549 791 ntTSL 3 BASIC5.81□□□□□ -1.48
VRK3Q8IV63 OFD1P11Y-201ENST00000418213 1177 ntBASIC5.81□□□□□ -1.48
VRK3Q8IV63 NME1P1-201ENST00000420914 382 ntBASIC5.81□□□□□ -1.48
VRK3Q8IV63 AL008723.2-201ENST00000426354 562 ntTSL 4 BASIC5.81□□□□□ -1.48
VRK3Q8IV63 LINC00348-201ENST00000428761 948 ntTSL 3 BASIC5.81□□□□□ -1.48
VRK3Q8IV63 AL021408.1-201ENST00000430428 552 ntTSL 4 BASIC5.81□□□□□ -1.48
VRK3Q8IV63 RPS26P4-201ENST00000431743 355 ntBASIC5.81□□□□□ -1.48
VRK3Q8IV63 TRIM60P9Y-201ENST00000438459 816 ntBASIC5.81□□□□□ -1.48
VRK3Q8IV63 CYP3A5-203ENST00000439761 1075 ntTSL 2 BASIC5.81□□□□□ -1.48
VRK3Q8IV63 FMR1-IT1-201ENST00000441414 343 ntTSL 5 BASIC5.81□□□□□ -1.48
VRK3Q8IV63 TRIM60P11Y-201ENST00000445313 801 ntBASIC5.81□□□□□ -1.48
VRK3Q8IV63 AL731574.1-201ENST00000447757 456 ntTSL 5 BASIC5.81□□□□□ -1.48
VRK3Q8IV63 CFL1P4-201ENST00000451536 498 ntBASIC5.81□□□□□ -1.48
VRK3Q8IV63 GEMIN2P1-201ENST00000454246 752 ntBASIC5.81□□□□□ -1.48
VRK3Q8IV63 CEP70-205ENST00000464035 1054 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
VRK3Q8IV63 AC092865.4-201ENST00000477936 615 ntBASIC5.81□□□□□ -1.48
VRK3Q8IV63 AC073359.1-201ENST00000486545 521 ntTSL 2 BASIC5.81□□□□□ -1.48
VRK3Q8IV63 RPS3AP22-201ENST00000488297 769 ntBASIC5.81□□□□□ -1.48
VRK3Q8IV63 PCNAP1-201ENST00000505363 709 ntBASIC5.81□□□□□ -1.48
VRK3Q8IV63 LINC00603-201ENST00000507027 733 ntTSL 5 BASIC5.81□□□□□ -1.48
VRK3Q8IV63 OR5H7P-201ENST00000514084 930 ntBASIC5.81□□□□□ -1.48
VRK3Q8IV63 CASC21-201ENST00000521586 290 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
VRK3Q8IV63 RFPL1S-203ENST00000539579 330 ntBASIC5.81□□□□□ -1.48
VRK3Q8IV63 IFNG-AS1-203ENST00000541715 902 ntTSL 3 BASIC5.81□□□□□ -1.48
VRK3Q8IV63 CACNA1C-AS4-201ENST00000544415 735 ntTSL 3 BASIC5.81□□□□□ -1.48
VRK3Q8IV63 AC024909.2-201ENST00000553035 286 ntBASIC5.81□□□□□ -1.48
VRK3Q8IV63 AC066613.1-201ENST00000559977 1053 ntTSL 2 BASIC5.81□□□□□ -1.48
VRK3Q8IV63 AC009087.1-201ENST00000561827 369 ntTSL 3 BASIC5.81□□□□□ -1.48
VRK3Q8IV63 AC007346.2-201ENST00000564816 892 ntBASIC5.81□□□□□ -1.48
VRK3Q8IV63 TXNP4-201ENST00000575018 310 ntBASIC5.81□□□□□ -1.48
VRK3Q8IV63 AC090236.2-201ENST00000587933 1101 ntBASIC5.81□□□□□ -1.48
VRK3Q8IV63 UBA2-208ENST00000592791 910 ntTSL 2 BASIC5.81□□□□□ -1.48
VRK3Q8IV63 CT45A1-202ENST00000594565 1007 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
VRK3Q8IV63 AC099785.1-201ENST00000605697 437 ntBASIC5.81□□□□□ -1.48
VRK3Q8IV63 AC006338.2-201ENST00000616864 791 ntBASIC5.81□□□□□ -1.48
VRK3Q8IV63 AC024884.1-201ENST00000620583 399 ntBASIC5.81□□□□□ -1.48
VRK3Q8IV63 AC025262.3-201ENST00000623666 360 ntBASIC5.81□□□□□ -1.48
VRK3Q8IV63 AC098679.5-201ENST00000624394 571 ntBASIC5.81□□□□□ -1.48
VRK3Q8IV63 SNX18P12-201ENST00000624821 759 ntBASIC5.81□□□□□ -1.48
VRK3Q8IV63 CGA-204ENST00000627148 1010 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
VRK3Q8IV63 AC089998.1-201ENST00000548575 3141 ntBASIC5.81□□□□□ -1.48
VRK3Q8IV63 ZC3H7A-214ENST00000575984 2632 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
VRK3Q8IV63 POLK-204ENST00000504026 1484 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
VRK3Q8IV63 GLIPR1L2-202ENST00000378692 1903 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
VRK3Q8IV63 VPS35-201ENST00000299138 6790 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
VRK3Q8IV63 ANKRD46-204ENST00000519597 2779 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
VRK3Q8IV63 KCTD4-201ENST00000379108 1865 ntAPPRIS P1 BASIC5.81□□□□□ -1.48
VRK3Q8IV63 HHLA2-211ENST00000619531 2548 ntAPPRIS P3 TSL 5 BASIC5.81□□□□□ -1.48
VRK3Q8IV63 AP004243.1-201ENST00000529108 1433 ntAPPRIS P1 TSL 5 BASIC5.81□□□□□ -1.48
VRK3Q8IV63 ZNF300P1-202ENST00000520773 3115 ntTSL 5 BASIC5.81□□□□□ -1.48
VRK3Q8IV63 TRPM6-202ENST00000360774 8425 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
VRK3Q8IV63 WDR63-202ENST00000326813 2888 ntAPPRIS ALT2 TSL 2 BASIC5.81□□□□□ -1.48
VRK3Q8IV63 SAMSN1-202ENST00000400564 1382 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
VRK3Q8IV63 LINC00891-201ENST00000627173 4113 ntTSL 2 BASIC5.8□□□□□ -1.48
VRK3Q8IV63 LINC01419-201ENST00000522365 1521 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
VRK3Q8IV63 DCDC1-207ENST00000452803 1706 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
VRK3Q8IV63 AC005224.3-201ENST00000584683 2140 ntBASIC5.8□□□□□ -1.48
VRK3Q8IV63 EXD1-201ENST00000314992 2942 ntAPPRIS P3 TSL 1 (best) BASIC5.8□□□□□ -1.48
VRK3Q8IV63 AJ009632.2-208ENST00000635525 4123 ntTSL 5 BASIC5.8□□□□□ -1.48
VRK3Q8IV63 RAD1P1-201ENST00000231383 813 ntBASIC5.8□□□□□ -1.48
VRK3Q8IV63 OR14C36-201ENST00000317861 939 ntAPPRIS P1 BASIC5.8□□□□□ -1.48
VRK3Q8IV63 IFNA10-201ENST00000357374 963 ntAPPRIS P1 BASIC5.8□□□□□ -1.48
Retrieved 100 of 98,524 protein–RNA pairs in 81.8 ms