Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 ZNF81-204ENST00000376954 7933 ntAPPRIS P1 TSL 5 BASIC6.42□□□□□ -1.38
CCDC88AQ3V6T2 CACNA1D-224ENST00000637424 6856 ntAPPRIS ALT2 TSL 5 BASIC6.42□□□□□ -1.38
CCDC88AQ3V6T2 SPATA42-201ENST00000369989 535 ntTSL 1 (best) BASIC6.42□□□□□ -1.38
CCDC88AQ3V6T2 SVBP-202ENST00000372522 650 ntAPPRIS P1 TSL 3 BASIC6.42□□□□□ -1.38
CCDC88AQ3V6T2 PLIN2-202ENST00000380464 655 ntTSL 2 BASIC6.42□□□□□ -1.38
CCDC88AQ3V6T2 HSPA8P15-201ENST00000401676 786 ntBASIC6.42□□□□□ -1.38
CCDC88AQ3V6T2 GJA6P-201ENST00000415117 1042 ntBASIC6.42□□□□□ -1.38
CCDC88AQ3V6T2 SLC9B1P4-201ENST00000421957 1288 ntBASIC6.42□□□□□ -1.38
CCDC88AQ3V6T2 GTF2IP2-201ENST00000424290 697 ntBASIC6.42□□□□□ -1.38
CCDC88AQ3V6T2 AC004975.1-201ENST00000428733 208 ntBASIC6.42□□□□□ -1.38
CCDC88AQ3V6T2 NDUFA5P8-201ENST00000449019 346 ntBASIC6.42□□□□□ -1.38
CCDC88AQ3V6T2 AC096543.1-201ENST00000455038 823 ntTSL 3 BASIC6.42□□□□□ -1.38
CCDC88AQ3V6T2 RN7SL814P-201ENST00000487715 300 ntBASIC6.42□□□□□ -1.38
CCDC88AQ3V6T2 LINC00491-204ENST00000513815 582 ntTSL 4 BASIC6.42□□□□□ -1.38
CCDC88AQ3V6T2 SPRY4-AS1-205ENST00000514303 152 ntTSL 3 BASIC6.42□□□□□ -1.38
CCDC88AQ3V6T2 AC024681.2-201ENST00000523525 204 ntTSL 5 BASIC6.42□□□□□ -1.38
CCDC88AQ3V6T2 AC007599.2-201ENST00000573040 493 ntTSL 5 BASIC6.42□□□□□ -1.38
CCDC88AQ3V6T2 AP003400.3-201ENST00000624904 346 ntBASIC6.42□□□□□ -1.38
CCDC88AQ3V6T2 AC099654.6-201ENST00000636487 512 ntBASIC6.42□□□□□ -1.38
CCDC88AQ3V6T2 EIF3E-206ENST00000519030 1324 ntTSL 5 BASIC6.42□□□□□ -1.38
CCDC88AQ3V6T2 UGT2B24P-201ENST00000514441 1597 ntBASIC6.42□□□□□ -1.38
CCDC88AQ3V6T2 SDAD1P1-202ENST00000524156 2051 ntBASIC6.42□□□□□ -1.38
CCDC88AQ3V6T2 AMPD1-203ENST00000520113 2375 ntAPPRIS P3 TSL 1 (best) BASIC6.42□□□□□ -1.38
CCDC88AQ3V6T2 DNAJC6-203ENST00000395325 5743 ntTSL 1 (best) BASIC6.42□□□□□ -1.38
CCDC88AQ3V6T2 GAPT-202ENST00000396776 3016 ntAPPRIS P1 TSL 2 BASIC6.41□□□□□ -1.38
CCDC88AQ3V6T2 LINC02523-201ENST00000423208 2963 ntTSL 1 (best) BASIC6.41□□□□□ -1.38
CCDC88AQ3V6T2 ZBBX-202ENST00000392764 2849 ntAPPRIS ALT2 TSL 1 (best) BASIC6.41□□□□□ -1.38
CCDC88AQ3V6T2 AC114774.1-201ENST00000507410 1770 ntBASIC6.41□□□□□ -1.38
CCDC88AQ3V6T2 AL162425.1-201ENST00000423637 1525 ntTSL 1 (best) BASIC6.41□□□□□ -1.38
CCDC88AQ3V6T2 FOXP2-202ENST00000360232 1412 ntTSL 1 (best) BASIC6.41□□□□□ -1.38
CCDC88AQ3V6T2 RN7SKP185-201ENST00000362813 326 ntBASIC6.41□□□□□ -1.38
CCDC88AQ3V6T2 RNU11-201ENST00000387069 134 ntBASIC6.41□□□□□ -1.38
CCDC88AQ3V6T2 RNA5SP113-201ENST00000410486 84 ntBASIC6.41□□□□□ -1.38
CCDC88AQ3V6T2 RNU2-50P-201ENST00000410494 143 ntBASIC6.41□□□□□ -1.38
CCDC88AQ3V6T2 MOBP-203ENST00000415443 577 ntAPPRIS ALT2 TSL 4 BASIC6.41□□□□□ -1.38
CCDC88AQ3V6T2 AC068481.1-202ENST00000428379 555 ntTSL 4 BASIC6.41□□□□□ -1.38
CCDC88AQ3V6T2 AL136140.1-201ENST00000436113 473 ntTSL 3 BASIC6.41□□□□□ -1.38
CCDC88AQ3V6T2 MED28P3-201ENST00000444288 531 ntBASIC6.41□□□□□ -1.38
CCDC88AQ3V6T2 AC009963.4-201ENST00000448535 339 ntBASIC6.41□□□□□ -1.38
CCDC88AQ3V6T2 AL590764.1-201ENST00000450860 726 ntTSL 3 BASIC6.41□□□□□ -1.38
CCDC88AQ3V6T2 TAAR4P-201ENST00000454843 1039 ntBASIC6.41□□□□□ -1.38
CCDC88AQ3V6T2 AC008574.1-201ENST00000514240 433 ntTSL 3 BASIC6.41□□□□□ -1.38
CCDC88AQ3V6T2 AC008147.3-201ENST00000548666 354 ntBASIC6.41□□□□□ -1.38
CCDC88AQ3V6T2 POU1F1-203ENST00000560656 647 ntTSL 5 BASIC6.41□□□□□ -1.38
CCDC88AQ3V6T2 MIR4420-201ENST00000583944 77 ntBASIC6.41□□□□□ -1.38
CCDC88AQ3V6T2 AP001542.3-201ENST00000587619 527 ntTSL 5 BASIC6.41□□□□□ -1.38
CCDC88AQ3V6T2 AL360012.1-201ENST00000602813 131 ntBASIC6.41□□□□□ -1.38
CCDC88AQ3V6T2 AC103792.1-201ENST00000603591 919 ntBASIC6.41□□□□□ -1.38
CCDC88AQ3V6T2 AC012414.7-202ENST00000622705 1090 ntBASIC6.41□□□□□ -1.38
CCDC88AQ3V6T2 OR52H1-202ENST00000641796 1061 ntBASIC6.41□□□□□ -1.38
CCDC88AQ3V6T2 C2orf83-206ENST00000642055 453 ntAPPRIS P3 BASIC6.41□□□□□ -1.38
CCDC88AQ3V6T2 SORCS1-209ENST00000612154 6862 ntTSL 5 BASIC6.41□□□□□ -1.38
CCDC88AQ3V6T2 PLEKHA1-203ENST00000368990 14010 ntAPPRIS P1 TSL 1 (best) BASIC6.41□□□□□ -1.38
CCDC88AQ3V6T2 STON1-202ENST00000406226 5614 ntAPPRIS P1 TSL 1 (best) BASIC6.41□□□□□ -1.38
CCDC88AQ3V6T2 NBPF19-201ENST00000369227 3670 ntTSL 5 BASIC6.41□□□□□ -1.38
CCDC88AQ3V6T2 NBPF20-203ENST00000594479 3670 ntTSL 5 BASIC6.41□□□□□ -1.38
CCDC88AQ3V6T2 NBPF14-210ENST00000621066 3670 ntTSL 5 BASIC6.41□□□□□ -1.38
CCDC88AQ3V6T2 PLA2R1-201ENST00000283243 14371 ntAPPRIS P3 TSL 1 (best) BASIC6.41□□□□□ -1.38
CCDC88AQ3V6T2 PLCE1-203ENST00000371385 6500 ntAPPRIS ALT2 TSL 5 BASIC6.41□□□□□ -1.38
CCDC88AQ3V6T2 ANKRD31-203ENST00000506364 6207 ntAPPRIS ALT2 TSL 5 BASIC6.41□□□□□ -1.38
CCDC88AQ3V6T2 EFNA5-206ENST00000611503 4933 ntTSL 5 BASIC6.41□□□□□ -1.38
CCDC88AQ3V6T2 SYCP2L-207ENST00000543878 2436 ntAPPRIS ALT2 TSL 5 BASIC6.41□□□□□ -1.38
CCDC88AQ3V6T2 ALCAM-205ENST00000472644 4189 ntTSL 1 (best) BASIC6.41□□□□□ -1.38
CCDC88AQ3V6T2 NCOA3-201ENST00000371997 6750 ntAPPRIS ALT2 TSL 1 (best) BASIC6.41□□□□□ -1.38
CCDC88AQ3V6T2 CDK14-206ENST00000436577 4787 ntTSL 2 BASIC6.41□□□□□ -1.38
CCDC88AQ3V6T2 CCL20-201ENST00000358813 800 ntAPPRIS P3 TSL 1 (best) BASIC6.41□□□□□ -1.38
CCDC88AQ3V6T2 HMGB3P7-201ENST00000400214 611 ntBASIC6.41□□□□□ -1.38
CCDC88AQ3V6T2 OR2AM1P-201ENST00000422137 422 ntBASIC6.41□□□□□ -1.38
CCDC88AQ3V6T2 BX276092.6-201ENST00000430476 250 ntBASIC6.41□□□□□ -1.38
CCDC88AQ3V6T2 AL161722.2-201ENST00000434731 981 ntBASIC6.41□□□□□ -1.38
CCDC88AQ3V6T2 GUSBP6-201ENST00000434932 640 ntTSL 1 (best) BASIC6.41□□□□□ -1.38
CCDC88AQ3V6T2 TMEM246-AS1-204ENST00000450109 538 ntTSL 3 BASIC6.41□□□□□ -1.38
CCDC88AQ3V6T2 BX276092.8-201ENST00000455722 250 ntBASIC6.41□□□□□ -1.38
CCDC88AQ3V6T2 AC090204.1-202ENST00000500843 737 ntTSL 5 BASIC6.41□□□□□ -1.38
CCDC88AQ3V6T2 AC005674.1-201ENST00000503493 459 ntTSL 3 BASIC6.41□□□□□ -1.38
CCDC88AQ3V6T2 AC034205.1-201ENST00000520621 638 ntBASIC6.41□□□□□ -1.38
CCDC88AQ3V6T2 ATXN3-215ENST00000532032 1191 ntTSL 1 (best) BASIC6.41□□□□□ -1.38
CCDC88AQ3V6T2 OR7E128P-201ENST00000532736 1024 ntBASIC6.41□□□□□ -1.38
CCDC88AQ3V6T2 MFAP5-205ENST00000535336 566 ntTSL 4 BASIC6.41□□□□□ -1.38
CCDC88AQ3V6T2 MEMO1P5-201ENST00000604810 406 ntBASIC6.41□□□□□ -1.38
CCDC88AQ3V6T2 AL161616.1-201ENST00000611867 286 ntBASIC6.41□□□□□ -1.38
CCDC88AQ3V6T2 MIR6133-201ENST00000617057 108 ntBASIC6.41□□□□□ -1.38
CCDC88AQ3V6T2 PDE1C-203ENST00000396184 8852 ntTSL 1 (best) BASIC6.41□□□□□ -1.38
CCDC88AQ3V6T2 FHL5-201ENST00000326771 2031 ntAPPRIS P1 TSL 1 (best) BASIC6.41□□□□□ -1.38
CCDC88AQ3V6T2 RXFP1-206ENST00000460056 2735 ntTSL 2 BASIC6.4□□□□□ -1.38
CCDC88AQ3V6T2 B3GALT2-201ENST00000367434 3274 ntAPPRIS P1 TSL 1 (best) BASIC6.4□□□□□ -1.38
CCDC88AQ3V6T2 NIT2-201ENST00000394140 7289 ntAPPRIS P1 TSL 1 (best) BASIC6.4□□□□□ -1.38
CCDC88AQ3V6T2 STS-201ENST00000217961 6521 ntAPPRIS P1 TSL 1 (best) BASIC6.4□□□□□ -1.38
CCDC88AQ3V6T2 CYLD-203ENST00000427738 8503 ntTSL 5 BASIC6.4□□□□□ -1.38
CCDC88AQ3V6T2 NCOA2-201ENST00000452400 8447 ntAPPRIS P1 TSL 1 (best) BASIC6.4□□□□□ -1.38
CCDC88AQ3V6T2 N4BP2L2-IT2-201ENST00000629393 4890 ntBASIC6.4□□□□□ -1.38
CCDC88AQ3V6T2 CRB1-209ENST00000535699 5140 ntTSL 5 BASIC6.4□□□□□ -1.38
CCDC88AQ3V6T2 IL3-201ENST00000296870 1050 ntAPPRIS P1 TSL 1 (best) BASIC6.4□□□□□ -1.39
CCDC88AQ3V6T2 AC092920.1-201ENST00000428516 678 ntTSL 5 BASIC6.4□□□□□ -1.39
CCDC88AQ3V6T2 DOCK9-AS1-201ENST00000439367 392 ntTSL 3 BASIC6.4□□□□□ -1.39
CCDC88AQ3V6T2 AC234781.3-201ENST00000452540 973 ntBASIC6.4□□□□□ -1.39
CCDC88AQ3V6T2 IGKV2D-30-201ENST00000474213 395 ntAPPRIS P1 BASIC6.4□□□□□ -1.39
CCDC88AQ3V6T2 OR8Q1P-201ENST00000526467 655 ntBASIC6.4□□□□□ -1.39
CCDC88AQ3V6T2 AC130364.2-201ENST00000528639 604 ntBASIC6.4□□□□□ -1.39
CCDC88AQ3V6T2 AC068789.1-201ENST00000547942 577 ntTSL 2 BASIC6.4□□□□□ -1.39
Retrieved 100 of 98,524 protein–RNA pairs in 111 ms