Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 TRDC-201ENST00000390477 720 ntAPPRIS P1 BASIC5.87□□□□□ -1.47
HDAC4P56524 RPL34-203ENST00000394668 853 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
HDAC4P56524 AL512422.1-201ENST00000407033 553 ntBASIC5.87□□□□□ -1.47
HDAC4P56524 TRIM60P17-201ENST00000415181 719 ntBASIC5.87□□□□□ -1.47
HDAC4P56524 LINC01661-201ENST00000415910 708 ntTSL 3 BASIC5.87□□□□□ -1.47
HDAC4P56524 EEF1A1P29-201ENST00000416082 1096 ntBASIC5.87□□□□□ -1.47
HDAC4P56524 RNF10P1-201ENST00000418589 369 ntBASIC5.87□□□□□ -1.47
HDAC4P56524 AL513188.1-201ENST00000421167 614 ntTSL 3 BASIC5.87□□□□□ -1.47
HDAC4P56524 AL662874.1-201ENST00000426065 230 ntBASIC5.87□□□□□ -1.47
HDAC4P56524 ARPP21-215ENST00000432682 1015 ntTSL 5 BASIC5.87□□□□□ -1.47
HDAC4P56524 GYPE-202ENST00000437468 499 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
HDAC4P56524 AL138787.1-202ENST00000437804 898 ntBASIC5.87□□□□□ -1.47
HDAC4P56524 AC006335.2-201ENST00000437993 330 ntBASIC5.87□□□□□ -1.47
HDAC4P56524 ARPP21-218ENST00000438071 1103 ntTSL 3 BASIC5.87□□□□□ -1.47
HDAC4P56524 AF130359.1-201ENST00000444868 438 ntTSL 3 BASIC5.87□□□□□ -1.47
HDAC4P56524 LINC01448-201ENST00000455947 1171 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
HDAC4P56524 SPRR2F-201ENST00000468739 681 ntAPPRIS P1 TSL 3 BASIC5.87□□□□□ -1.47
HDAC4P56524 AC007998.1-201ENST00000474156 672 ntBASIC5.87□□□□□ -1.47
HDAC4P56524 AC022336.1-201ENST00000475510 337 ntBASIC5.87□□□□□ -1.47
HDAC4P56524 AC087672.1-201ENST00000479876 766 ntBASIC5.87□□□□□ -1.47
HDAC4P56524 OR11I1P-201ENST00000486033 954 ntBASIC5.87□□□□□ -1.47
HDAC4P56524 VPS26A-206ENST00000489794 928 ntTSL 3 BASIC5.87□□□□□ -1.47
HDAC4P56524 DUBR-205ENST00000495228 411 ntTSL 2 BASIC5.87□□□□□ -1.47
HDAC4P56524 OR10J4-201ENST00000504970 935 ntAPPRIS P1 BASIC5.87□□□□□ -1.47
HDAC4P56524 RNU6-319P-201ENST00000516025 108 ntBASIC5.87□□□□□ -1.47
HDAC4P56524 RNU6-615P-201ENST00000516065 106 ntBASIC5.87□□□□□ -1.47
HDAC4P56524 AC027308.1-201ENST00000517993 110 ntBASIC5.87□□□□□ -1.47
HDAC4P56524 AC022826.1-201ENST00000519383 805 ntBASIC5.87□□□□□ -1.47
HDAC4P56524 LINC00535-203ENST00000520096 790 ntTSL 3 BASIC5.87□□□□□ -1.47
HDAC4P56524 AC246817.2-206ENST00000520570 582 ntTSL 4 BASIC5.87□□□□□ -1.47
HDAC4P56524 SLC7A7-210ENST00000554517 1158 ntTSL 5 BASIC5.87□□□□□ -1.47
HDAC4P56524 LINC00687-203ENST00000558175 696 ntTSL 3 BASIC5.87□□□□□ -1.47
HDAC4P56524 AC066613.1-201ENST00000559977 1053 ntTSL 2 BASIC5.87□□□□□ -1.47
HDAC4P56524 AP001496.3-201ENST00000580230 913 ntBASIC5.87□□□□□ -1.47
HDAC4P56524 MIR4311-201ENST00000580794 100 ntBASIC5.87□□□□□ -1.47
HDAC4P56524 AC004596.1-201ENST00000586560 528 ntTSL 3 BASIC5.87□□□□□ -1.47
HDAC4P56524 AP002884.5-201ENST00000595053 1132 ntBASIC5.87□□□□□ -1.47
HDAC4P56524 MIR6768-201ENST00000610734 72 ntBASIC5.87□□□□□ -1.47
HDAC4P56524 IGLV10-54-202ENST00000640991 351 ntTSL 5 BASIC5.87□□□□□ -1.47
HDAC4P56524 AC079776.5-201ENST00000641920 211 ntBASIC5.87□□□□□ -1.47
HDAC4P56524 CIR1P2-201ENST00000514821 1342 ntBASIC5.87□□□□□ -1.47
HDAC4P56524 DSE-204ENST00000452085 10586 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
HDAC4P56524 DCN-202ENST00000393155 2133 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
HDAC4P56524 SDAD1-203ENST00000395711 2513 ntTSL 2 BASIC5.87□□□□□ -1.47
HDAC4P56524 NOSTRIN-206ENST00000444448 2537 ntTSL 5 BASIC5.87□□□□□ -1.47
HDAC4P56524 AC104964.3-201ENST00000606115 2860 ntBASIC5.87□□□□□ -1.47
HDAC4P56524 ZNF189-201ENST00000259395 3115 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
HDAC4P56524 KSR2-202ENST00000425217 17008 ntTSL 5 BASIC5.87□□□□□ -1.47
HDAC4P56524 LINC01581-202ENST00000558874 3173 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
HDAC4P56524 TNRC6B-201ENST00000301923 15958 ntAPPRIS P3 TSL 5 BASIC5.86□□□□□ -1.47
HDAC4P56524 FAM170B-AS1-203ENST00000442525 2000 ntTSL 2 BASIC5.86□□□□□ -1.47
HDAC4P56524 CROT-204ENST00000442291 1993 ntTSL 5 BASIC5.86□□□□□ -1.47
HDAC4P56524 EPS8-209ENST00000542903 1858 ntTSL 2 BASIC5.86□□□□□ -1.47
HDAC4P56524 DROSHA-212ENST00000511367 5305 ntAPPRIS P4 TSL 1 (best) BASIC5.86□□□□□ -1.47
HDAC4P56524 PATE1-201ENST00000305738 1527 ntAPPRIS P2 TSL 1 (best) BASIC5.86□□□□□ -1.47
HDAC4P56524 CNOT6LP1-201ENST00000559681 1462 ntBASIC5.86□□□□□ -1.47
HDAC4P56524 SAMD13-204ENST00000370671 724 ntTSL 3 BASIC5.86□□□□□ -1.47
HDAC4P56524 IGLV3-10-201ENST00000390315 382 ntAPPRIS P1 BASIC5.86□□□□□ -1.47
HDAC4P56524 KRTAP29-1-201ENST00000391353 1026 ntAPPRIS P1 BASIC5.86□□□□□ -1.47
HDAC4P56524 CDKN3-203ENST00000395577 637 ntTSL 5 BASIC5.86□□□□□ -1.47
HDAC4P56524 AC002524.1-201ENST00000411687 547 ntBASIC5.86□□□□□ -1.47
HDAC4P56524 AC003975.1-201ENST00000411856 837 ntTSL 3 BASIC5.86□□□□□ -1.47
HDAC4P56524 AL357078.2-201ENST00000416486 427 ntBASIC5.86□□□□□ -1.47
HDAC4P56524 GPC5-AS2-201ENST00000417589 401 ntTSL 3 BASIC5.86□□□□□ -1.47
HDAC4P56524 OR4K3-201ENST00000425829 947 ntAPPRIS P1 BASIC5.86□□□□□ -1.47
HDAC4P56524 AC104843.2-201ENST00000427666 297 ntBASIC5.86□□□□□ -1.47
HDAC4P56524 MTND6P12-201ENST00000428247 522 ntBASIC5.86□□□□□ -1.47
HDAC4P56524 MTND4LP14-201ENST00000429447 288 ntBASIC5.86□□□□□ -1.47
HDAC4P56524 AP001476.3-201ENST00000429512 415 ntTSL 3 BASIC5.86□□□□□ -1.47
HDAC4P56524 ISM1-AS1-201ENST00000431407 652 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
HDAC4P56524 TMEM183AP1-205ENST00000432739 290 ntBASIC5.86□□□□□ -1.47
HDAC4P56524 NANOGP9-201ENST00000439890 892 ntBASIC5.86□□□□□ -1.47
HDAC4P56524 AC007327.2-201ENST00000440788 457 ntTSL 3 BASIC5.86□□□□□ -1.47
HDAC4P56524 AC005297.1-201ENST00000444765 862 ntBASIC5.86□□□□□ -1.47
HDAC4P56524 AL596266.1-201ENST00000448132 400 ntBASIC5.86□□□□□ -1.47
HDAC4P56524 AP003774.2-202ENST00000449694 341 ntTSL 3 BASIC5.86□□□□□ -1.47
HDAC4P56524 AL356272.1-201ENST00000454538 832 ntTSL 2 BASIC5.86□□□□□ -1.47
HDAC4P56524 MTND2P39-201ENST00000457230 764 ntBASIC5.86□□□□□ -1.47
HDAC4P56524 AC068672.3-203ENST00000505166 311 ntTSL 3 BASIC5.86□□□□□ -1.47
HDAC4P56524 SNORA43.3-201ENST00000517240 103 ntBASIC5.86□□□□□ -1.47
HDAC4P56524 AC021733.1-201ENST00000519786 325 ntTSL 3 BASIC5.86□□□□□ -1.47
HDAC4P56524 NRG1-IT1-201ENST00000520444 758 ntTSL 3 BASIC5.86□□□□□ -1.47
HDAC4P56524 AC019227.1-201ENST00000526902 510 ntBASIC5.86□□□□□ -1.47
HDAC4P56524 SNHG1-218ENST00000541615 748 ntTSL 5 BASIC5.86□□□□□ -1.47
HDAC4P56524 AC084824.2-201ENST00000548906 345 ntBASIC5.86□□□□□ -1.47
HDAC4P56524 AC090403.1-204ENST00000582893 572 ntTSL 4 BASIC5.86□□□□□ -1.47
HDAC4P56524 AC011473.2-201ENST00000596286 240 ntTSL 3 BASIC5.86□□□□□ -1.47
HDAC4P56524 AC012313.4-201ENST00000596296 495 ntTSL 3 BASIC5.86□□□□□ -1.47
HDAC4P56524 AC253576.2-201ENST00000618815 580 ntBASIC5.86□□□□□ -1.47
HDAC4P56524 AL356490.1-201ENST00000623079 479 ntBASIC5.86□□□□□ -1.47
HDAC4P56524 LINC01955-201ENST00000626392 792 ntTSL 5 BASIC5.86□□□□□ -1.47
HDAC4P56524 KMT2D-201ENST00000301067 19419 ntAPPRIS P1 TSL 5 BASIC5.86□□□□□ -1.47
HDAC4P56524 IQCH-202ENST00000358767 3062 ntTSL 5 BASIC5.86□□□□□ -1.47
HDAC4P56524 RFFL-202ENST00000394597 4227 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
HDAC4P56524 CDON-206ENST00000531738 5803 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
HDAC4P56524 SCN2A-203ENST00000375437 8792 ntAPPRIS ALT1 TSL 5 BASIC5.86□□□□□ -1.47
HDAC4P56524 MYBPC1-208ENST00000547405 3834 ntAPPRIS ALT2 TSL 1 (best) BASIC5.86□□□□□ -1.47
HDAC4P56524 CTAGE5-208ENST00000553352 3441 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
HDAC4P56524 ALB-214ENST00000509063 1911 ntTSL 5 BASIC5.86□□□□□ -1.47
HDAC4P56524 FILIP1L-201ENST00000331335 4219 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
Retrieved 100 of 98,524 protein–RNA pairs in 87 ms