Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 AC018793.3-201ENST00000640805 585 ntAPPRIS P1 BASIC5.02□□□□□ -1.61
LIM2P55344 RNF213-204ENST00000508628 17730 ntAPPRIS ALT2 TSL 5 BASIC5.02□□□□□ -1.61
LIM2P55344 OR4K1-203ENST00000641429 1358 ntAPPRIS P1 BASIC5.02□□□□□ -1.61
LIM2P55344 RAB18-209ENST00000621805 4894 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
LIM2P55344 ZNF181-203ENST00000459757 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC5.02□□□□□ -1.61
LIM2P55344 ZNF573-208ENST00000536220 2257 ntAPPRIS P1 TSL 3 BASIC5.02□□□□□ -1.61
LIM2P55344 ZNF81-202ENST00000338637 7859 ntAPPRIS P1 TSL 3 BASIC5.02□□□□□ -1.61
LIM2P55344 SRSF11-201ENST00000370949 3034 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
LIM2P55344 NHSL2-204ENST00000631375 12593 ntTSL 5 BASIC5.01□□□□□ -1.61
LIM2P55344 GTPBP10-201ENST00000222511 7531 ntAPPRIS P1 TSL 1 (best) BASIC5.01□□□□□ -1.61
LIM2P55344 MUC12-206ENST00000536621 16321 ntAPPRIS P2 TSL 5 BASIC5.01□□□□□ -1.61
LIM2P55344 FOXP2-203ENST00000378237 2187 ntTSL 1 (best) BASIC5.01□□□□□ -1.61
LIM2P55344 LRRC19-201ENST00000380055 3609 ntAPPRIS P1 TSL 1 (best) BASIC5.01□□□□□ -1.61
LIM2P55344 LINC01375-201ENST00000428485 1860 ntTSL 2 BASIC5.01□□□□□ -1.61
LIM2P55344 VSNL1-203ENST00000406397 2725 ntAPPRIS P1 TSL 5 BASIC5.01□□□□□ -1.61
LIM2P55344 FASTKD3-201ENST00000264669 2402 ntAPPRIS P1 TSL 2 BASIC5.01□□□□□ -1.61
LIM2P55344 OR9G4-201ENST00000302957 984 ntBASIC5.01□□□□□ -1.61
LIM2P55344 OR2AE1-201ENST00000316368 1071 ntAPPRIS P1 BASIC5.01□□□□□ -1.61
LIM2P55344 SNORA51.1-201ENST00000363243 140 ntBASIC5.01□□□□□ -1.61
LIM2P55344 SNORA67-201ENST00000384423 137 ntBASIC5.01□□□□□ -1.61
LIM2P55344 TRGV5-201ENST00000390344 552 ntAPPRIS P1 BASIC5.01□□□□□ -1.61
LIM2P55344 MTERF4-204ENST00000406593 802 ntTSL 2 BASIC5.01□□□□□ -1.61
LIM2P55344 CASP5-203ENST00000418434 1023 ntTSL 5 BASIC5.01□□□□□ -1.61
LIM2P55344 AL161629.1-201ENST00000446201 457 ntTSL 3 BASIC5.01□□□□□ -1.61
LIM2P55344 AC013733.1-201ENST00000449835 985 ntTSL 4 BASIC5.01□□□□□ -1.61
LIM2P55344 KCNMB2-AS1-205ENST00000451742 844 ntTSL 4 BASIC5.01□□□□□ -1.61
LIM2P55344 HNRNPDLP2-201ENST00000455248 751 ntBASIC5.01□□□□□ -1.61
LIM2P55344 CBX1P5-201ENST00000475330 559 ntBASIC5.01□□□□□ -1.61
LIM2P55344 RPS4XP1-201ENST00000482189 787 ntBASIC5.01□□□□□ -1.61
LIM2P55344 UBA52P7-201ENST00000486088 380 ntBASIC5.01□□□□□ -1.61
LIM2P55344 RPS12P31-201ENST00000491419 398 ntBASIC5.01□□□□□ -1.61
LIM2P55344 LINC01339-201ENST00000505712 440 ntTSL 2 BASIC5.01□□□□□ -1.61
LIM2P55344 AC098976.1-201ENST00000513014 541 ntBASIC5.01□□□□□ -1.61
LIM2P55344 AP003696.1-201ENST00000519337 770 ntTSL 3 BASIC5.01□□□□□ -1.61
LIM2P55344 AC027369.5-201ENST00000533838 755 ntBASIC5.01□□□□□ -1.61
LIM2P55344 AL139354.1-201ENST00000554319 645 ntTSL 5 BASIC5.01□□□□□ -1.61
LIM2P55344 AL359219.2-201ENST00000555184 348 ntBASIC5.01□□□□□ -1.61
LIM2P55344 AC131532.1-201ENST00000555596 519 ntTSL 4 BASIC5.01□□□□□ -1.61
LIM2P55344 CLMN-206ENST00000556441 452 ntTSL 5 BASIC5.01□□□□□ -1.61
LIM2P55344 NMNAT1P5-201ENST00000559657 841 ntBASIC5.01□□□□□ -1.61
LIM2P55344 AC105094.2-202ENST00000590968 566 ntTSL 2 BASIC5.01□□□□□ -1.61
LIM2P55344 AC069307.1-201ENST00000602820 447 ntBASIC5.01□□□□□ -1.61
LIM2P55344 TRPM3-209ENST00000377110 12258 ntAPPRIS ALT1 TSL 1 (best) BASIC5.01□□□□□ -1.61
LIM2P55344 ADAM29-213ENST00000615367 3386 ntAPPRIS P1 TSL 5 BASIC5.01□□□□□ -1.61
LIM2P55344 LINC01378-201ENST00000422145 2516 ntTSL 3 BASIC5.01□□□□□ -1.61
LIM2P55344 ZNF790-201ENST00000356725 3037 ntAPPRIS P1 TSL 2 BASIC5.01□□□□□ -1.61
LIM2P55344 BTG4-203ENST00000525791 1394 ntTSL 1 (best) BASIC5.01□□□□□ -1.61
LIM2P55344 CPA3-201ENST00000296046 1795 ntAPPRIS P1 TSL 1 (best) BASIC5.01□□□□□ -1.61
LIM2P55344 GJA9-201ENST00000357771 1799 ntAPPRIS P1 TSL 1 (best) BASIC5.01□□□□□ -1.61
LIM2P55344 MAP2-205ENST00000392194 5303 ntTSL 1 (best) BASIC5.01□□□□□ -1.61
LIM2P55344 BANK1-203ENST00000444316 3141 ntTSL 2 BASIC5.01□□□□□ -1.61
LIM2P55344 BX284613.1-201ENST00000452221 1641 ntBASIC5.01□□□□□ -1.61
LIM2P55344 PLCXD3-201ENST00000328457 7538 ntAPPRIS P1 TSL 5 BASIC5.01□□□□□ -1.61
LIM2P55344 WDYHV1-208ENST00000523984 1491 ntTSL 2 BASIC5□□□□□ -1.61
LIM2P55344 MAP3K2-201ENST00000344908 2135 ntAPPRIS P1 TSL 1 (best) BASIC5□□□□□ -1.61
LIM2P55344 C11orf65-208ENST00000615746 2711 ntAPPRIS P1 TSL 1 (best) BASIC5□□□□□ -1.61
LIM2P55344 CASC8-203ENST00000502082 1420 ntTSL 1 (best) BASIC5□□□□□ -1.61
LIM2P55344 OR5AN1-203ENST00000641998 7647 ntAPPRIS P1 BASIC5□□□□□ -1.61
LIM2P55344 LRRC37A-203ENST00000496930 3860 ntTSL 2 BASIC5□□□□□ -1.61
LIM2P55344 RNU1-146P-201ENST00000364015 165 ntBASIC5□□□□□ -1.61
LIM2P55344 RN7SKP153-201ENST00000365026 316 ntBASIC5□□□□□ -1.61
LIM2P55344 AC093655.2-201ENST00000425735 631 ntBASIC5□□□□□ -1.61
LIM2P55344 AC090018.1-201ENST00000434369 367 ntBASIC5□□□□□ -1.61
LIM2P55344 AL161457.1-201ENST00000434656 905 ntTSL 5 BASIC5□□□□□ -1.61
LIM2P55344 RPL15P21-201ENST00000495592 567 ntBASIC5□□□□□ -1.61
LIM2P55344 RPS26P24-201ENST00000497656 331 ntBASIC5□□□□□ -1.61
LIM2P55344 AC024558.1-201ENST00000505008 528 ntBASIC5□□□□□ -1.61
LIM2P55344 SPINK9-202ENST00000511717 604 ntAPPRIS ALT2 TSL 5 BASIC5□□□□□ -1.61
LIM2P55344 AC138832.1-201ENST00000522871 556 ntBASIC5□□□□□ -1.61
LIM2P55344 AP000722.1-201ENST00000531176 775 ntTSL 3 BASIC5□□□□□ -1.61
LIM2P55344 LINC02366-202ENST00000541949 696 ntTSL 3 BASIC5□□□□□ -1.61
LIM2P55344 AC007527.1-202ENST00000543347 382 ntTSL 3 BASIC5□□□□□ -1.61
LIM2P55344 AC026401.1-201ENST00000549756 530 ntTSL 3 BASIC5□□□□□ -1.61
LIM2P55344 MIR4489-201ENST00000578869 62 ntBASIC5□□□□□ -1.61
LIM2P55344 AL162431.4-201ENST00000604674 411 ntBASIC5□□□□□ -1.61
LIM2P55344 MIR6886-201ENST00000619864 61 ntBASIC5□□□□□ -1.61
LIM2P55344 LINC00284-211ENST00000620454 534 ntTSL 4 BASIC5□□□□□ -1.61
LIM2P55344 AC091932.2-201ENST00000623014 291 ntBASIC5□□□□□ -1.61
LIM2P55344 MTCO1P1-201ENST00000624263 1081 ntBASIC5□□□□□ -1.61
LIM2P55344 OR5H15-202ENST00000641450 1229 ntAPPRIS P1 BASIC5□□□□□ -1.61
LIM2P55344 UBXN7-201ENST00000296328 10568 ntAPPRIS P1 TSL 1 (best) BASIC5□□□□□ -1.61
LIM2P55344 AL138820.1-201ENST00000617901 5305 ntBASIC5□□□□□ -1.61
LIM2P55344 SLC15A2-201ENST00000295605 2379 ntTSL 2 BASIC5□□□□□ -1.61
LIM2P55344 KMO-203ENST00000366558 1868 ntAPPRIS ALT2 TSL 1 (best) BASIC5□□□□□ -1.61
LIM2P55344 EEF1A1P14-201ENST00000421195 1376 ntBASIC5□□□□□ -1.61
LIM2P55344 ERVFRD-3-201ENST00000578561 1617 ntBASIC5□□□□□ -1.61
LIM2P55344 NSD1-204ENST00000439151 12892 ntAPPRIS P1 TSL 1 (best) BASIC5□□□□□ -1.61
LIM2P55344 GEN1-202ENST00000381254 6367 ntAPPRIS P1 TSL 5 BASIC5□□□□□ -1.61
LIM2P55344 PTPRB-202ENST00000334414 12316 ntAPPRIS P4 TSL 1 (best) BASIC5□□□□□ -1.61
LIM2P55344 MTO1-212ENST00000498286 10857 ntAPPRIS P1 TSL 1 (best) BASIC4.99□□□□□ -1.61
LIM2P55344 CEP162-207ENST00000617909 5095 ntTSL 5 BASIC4.99□□□□□ -1.61
LIM2P55344 RCOR3-201ENST00000367005 4246 ntTSL 1 (best) BASIC4.99□□□□□ -1.61
LIM2P55344 ZNF850-203ENST00000614887 7625 ntAPPRIS ALT2 TSL 1 (best) BASIC4.99□□□□□ -1.61
LIM2P55344 RYR3-201ENST00000389232 15552 ntAPPRIS ALT2 TSL 5 BASIC4.99□□□□□ -1.61
LIM2P55344 NUP37-201ENST00000251074 1203 ntAPPRIS P1 TSL 1 (best) BASIC4.99□□□□□ -1.61
LIM2P55344 OR8H3-201ENST00000313472 939 ntAPPRIS P1 BASIC4.99□□□□□ -1.61
LIM2P55344 NPM1-202ENST00000351986 1237 ntTSL 1 (best) BASIC4.99□□□□□ -1.61
LIM2P55344 AC005294.1-201ENST00000355509 281 ntBASIC4.99□□□□□ -1.61
LIM2P55344 SVBP-202ENST00000372522 650 ntAPPRIS P1 TSL 3 BASIC4.99□□□□□ -1.61
LIM2P55344 SNORA48.4-201ENST00000391089 134 ntBASIC4.99□□□□□ -1.61
Retrieved 100 of 98,524 protein–RNA pairs in 101.5 ms