Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 GAS2L3-203ENST00000539410 2229 ntAPPRIS P1 TSL 2 BASIC3.9□□□□□ -1.79
FOXA3P55318 AC107068.1-201ENST00000563286 4218 ntBASIC3.9□□□□□ -1.79
FOXA3P55318 AC087257.1-201ENST00000506925 2639 ntTSL 4 BASIC3.9□□□□□ -1.79
FOXA3P55318 IRAK4-203ENST00000448290 1381 ntTSL 5 BASIC3.89□□□□□ -1.79
FOXA3P55318 RASGEF1B-207ENST00000509081 3016 ntAPPRIS ALT1 TSL 5 BASIC3.89□□□□□ -1.79
FOXA3P55318 DAOA-211ENST00000618629 1368 ntAPPRIS P3 TSL 5 BASIC3.89□□□□□ -1.79
FOXA3P55318 XKRY2-202ENST00000623874 1581 ntBASIC3.89□□□□□ -1.79
FOXA3P55318 XKRY-202ENST00000624960 1581 ntBASIC3.89□□□□□ -1.79
FOXA3P55318 DHX9P1-201ENST00000436565 3076 ntBASIC3.89□□□□□ -1.79
FOXA3P55318 IFIT1B-201ENST00000371809 1972 ntAPPRIS P1 TSL 1 (best) BASIC3.89□□□□□ -1.79
FOXA3P55318 CSRNP3-201ENST00000314499 11788 ntAPPRIS P1 TSL 5 BASIC3.89□□□□□ -1.79
FOXA3P55318 ROBO2-213ENST00000614793 7662 ntTSL 5 BASIC3.89□□□□□ -1.79
FOXA3P55318 MTUS1-202ENST00000297488 3731 ntAPPRIS ALT1 TSL 1 (best) BASIC3.89□□□□□ -1.79
FOXA3P55318 DDR2-202ENST00000367922 10160 ntAPPRIS P1 TSL 1 (best) BASIC3.89□□□□□ -1.79
FOXA3P55318 SPART-202ENST00000438666 4789 ntAPPRIS P1 TSL 1 (best) BASIC3.89□□□□□ -1.79
FOXA3P55318 OCM2-201ENST00000257627 696 ntAPPRIS P1 TSL 1 (best) BASIC3.89□□□□□ -1.79
FOXA3P55318 OR6K2-201ENST00000359610 975 ntAPPRIS P1 BASIC3.89□□□□□ -1.79
FOXA3P55318 OR51A2-201ENST00000380371 942 ntAPPRIS P1 BASIC3.89□□□□□ -1.79
FOXA3P55318 RNU1-74P-201ENST00000384108 171 ntBASIC3.89□□□□□ -1.79
FOXA3P55318 SNORA16A-201ENST00000384342 137 ntBASIC3.89□□□□□ -1.79
FOXA3P55318 RNASE11-202ENST00000398009 1034 ntAPPRIS P2 TSL 5 BASIC3.89□□□□□ -1.79
FOXA3P55318 OR7E101P-201ENST00000400428 513 ntBASIC3.89□□□□□ -1.79
FOXA3P55318 GAPDHP42-201ENST00000406848 981 ntBASIC3.89□□□□□ -1.79
FOXA3P55318 RN7SKP38-201ENST00000410782 309 ntBASIC3.89□□□□□ -1.79
FOXA3P55318 NFU1P1-201ENST00000413128 774 ntBASIC3.89□□□□□ -1.79
FOXA3P55318 RANP7-201ENST00000418085 644 ntBASIC3.89□□□□□ -1.79
FOXA3P55318 LINC01638-201ENST00000418271 552 ntTSL 3 BASIC3.89□□□□□ -1.79
FOXA3P55318 EIF4A1P1-201ENST00000420241 934 ntBASIC3.89□□□□□ -1.79
FOXA3P55318 LINC01058-201ENST00000420694 448 ntTSL 5 BASIC3.89□□□□□ -1.79
FOXA3P55318 TXNIP-201ENST00000425134 1225 ntTSL 2 BASIC3.89□□□□□ -1.79
FOXA3P55318 AC092447.2-201ENST00000435487 669 ntBASIC3.89□□□□□ -1.79
FOXA3P55318 OR6D1P-201ENST00000436165 939 ntBASIC3.89□□□□□ -1.79
FOXA3P55318 NDUFS5P5-201ENST00000437256 321 ntBASIC3.89□□□□□ -1.79
FOXA3P55318 LINC02094-201ENST00000437646 520 ntTSL 2 BASIC3.89□□□□□ -1.79
FOXA3P55318 ATP6V1E1P1-201ENST00000439215 681 ntBASIC3.89□□□□□ -1.79
FOXA3P55318 UBQLN1P1-207ENST00000441056 1169 ntBASIC3.89□□□□□ -1.79
FOXA3P55318 RPL7AP61-201ENST00000443410 636 ntBASIC3.89□□□□□ -1.79
FOXA3P55318 LINC01496-201ENST00000448761 460 ntTSL 5 BASIC3.89□□□□□ -1.79
FOXA3P55318 CD200R1L-202ENST00000448932 750 ntAPPRIS ALT2 TSL 5 BASIC3.89□□□□□ -1.79
FOXA3P55318 RPS6P2-201ENST00000454208 705 ntBASIC3.89□□□□□ -1.79
FOXA3P55318 RPL21P6-201ENST00000479171 504 ntBASIC3.89□□□□□ -1.79
FOXA3P55318 AC020890.1-201ENST00000491837 504 ntBASIC3.89□□□□□ -1.79
FOXA3P55318 AC097534.1-201ENST00000507803 521 ntTSL 4 BASIC3.89□□□□□ -1.79
FOXA3P55318 LDHAP1-201ENST00000509421 992 ntBASIC3.89□□□□□ -1.79
FOXA3P55318 ENPP7P9-201ENST00000514456 627 ntBASIC3.89□□□□□ -1.79
FOXA3P55318 RNA5SP249-201ENST00000516127 99 ntBASIC3.89□□□□□ -1.79
FOXA3P55318 AC027308.1-201ENST00000517993 110 ntBASIC3.89□□□□□ -1.79
FOXA3P55318 PYM1-205ENST00000547925 499 ntTSL 3 BASIC3.89□□□□□ -1.79
FOXA3P55318 G2E3-AS1-201ENST00000548631 579 ntTSL 3 BASIC3.89□□□□□ -1.79
FOXA3P55318 AC008126.1-201ENST00000549019 480 ntBASIC3.89□□□□□ -1.79
FOXA3P55318 TRAV30-201ENST00000557168 337 ntAPPRIS P1 BASIC3.89□□□□□ -1.79
FOXA3P55318 RORA-AS2-202ENST00000561413 576 ntTSL 4 BASIC3.89□□□□□ -1.79
FOXA3P55318 AC145285.4-201ENST00000568183 540 ntTSL 3 BASIC3.89□□□□□ -1.79
FOXA3P55318 AC090283.1-201ENST00000582101 265 ntTSL 3 BASIC3.89□□□□□ -1.79
FOXA3P55318 AC005544.1-201ENST00000584277 460 ntTSL 3 BASIC3.89□□□□□ -1.79
FOXA3P55318 AC117569.1-201ENST00000584482 739 ntTSL 3 BASIC3.89□□□□□ -1.79
FOXA3P55318 METTL23-207ENST00000588783 1184 ntTSL 5 BASIC3.89□□□□□ -1.79
FOXA3P55318 AL161457.2-206ENST00000592778 802 ntTSL 5 BASIC3.89□□□□□ -1.79
FOXA3P55318 UBA2-208ENST00000592791 910 ntTSL 2 BASIC3.89□□□□□ -1.79
FOXA3P55318 ZNF528-211ENST00000598192 625 ntTSL 3 BASIC3.89□□□□□ -1.79
FOXA3P55318 AC124916.2-201ENST00000604416 224 ntBASIC3.89□□□□□ -1.79
FOXA3P55318 AC091167.5-201ENST00000605689 894 ntBASIC3.89□□□□□ -1.79
FOXA3P55318 MTCO1P1-201ENST00000624263 1081 ntBASIC3.89□□□□□ -1.79
FOXA3P55318 AL390318.1-201ENST00000624564 687 ntBASIC3.89□□□□□ -1.79
FOXA3P55318 AC068631.1-223ENST00000625877 472 ntTSL 5 BASIC3.89□□□□□ -1.79
FOXA3P55318 PIGX-210ENST00000639143 831 ntAPPRIS ALT2 TSL 2 BASIC3.89□□□□□ -1.79
FOXA3P55318 CD84-206ENST00000368054 8181 ntAPPRIS P3 TSL 1 (best) BASIC3.89□□□□□ -1.79
FOXA3P55318 C8orf4-201ENST00000315792 1854 ntAPPRIS P1 BASIC3.89□□□□□ -1.79
FOXA3P55318 AC093775.1-201ENST00000624154 1868 ntBASIC3.89□□□□□ -1.79
FOXA3P55318 SLAIN1-201ENST00000267219 2090 ntAPPRIS ALT2 TSL 1 (best) BASIC3.89□□□□□ -1.79
FOXA3P55318 ERI2-202ENST00000357967 3499 ntAPPRIS P1 TSL 5 BASIC3.89□□□□□ -1.79
FOXA3P55318 TIPARP-207ENST00000542783 3681 ntAPPRIS P1 TSL 1 (best) BASIC3.89□□□□□ -1.79
FOXA3P55318 PRUNE2-208ENST00000443509 12356 ntAPPRIS ALT2 TSL 5 BASIC3.89□□□□□ -1.79
FOXA3P55318 ZNF382-204ENST00000439428 2742 ntAPPRIS ALT2 TSL 1 (best) BASIC3.89□□□□□ -1.79
FOXA3P55318 HSPA13-201ENST00000285667 3986 ntAPPRIS P1 TSL 1 (best) BASIC3.89□□□□□ -1.79
FOXA3P55318 RCOR3-201ENST00000367005 4246 ntTSL 1 (best) BASIC3.89□□□□□ -1.79
FOXA3P55318 STAU2-220ENST00000522695 2646 ntAPPRIS ALT1 TSL 1 (best) BASIC3.89□□□□□ -1.79
FOXA3P55318 NR1H5P-201ENST00000452683 1377 ntBASIC3.89□□□□□ -1.79
FOXA3P55318 LINC02047-201ENST00000494761 1371 ntTSL 1 (best) BASIC3.89□□□□□ -1.79
FOXA3P55318 ATF7IP-214ENST00000540793 4142 ntAPPRIS P3 TSL 1 (best) BASIC3.89□□□□□ -1.79
FOXA3P55318 OR8H2-201ENST00000313503 3088 ntAPPRIS P2 BASIC3.89□□□□□ -1.79
FOXA3P55318 AC090510.1-202ENST00000500850 2017 ntTSL 1 (best) BASIC3.88□□□□□ -1.79
FOXA3P55318 CSPP1-201ENST00000262210 4367 ntAPPRIS P3 TSL 1 (best) BASIC3.88□□□□□ -1.79
FOXA3P55318 AC106895.2-201ENST00000511291 1824 ntTSL 3 BASIC3.88□□□□□ -1.79
FOXA3P55318 NCOA3-201ENST00000371997 6750 ntAPPRIS ALT2 TSL 1 (best) BASIC3.88□□□□□ -1.79
FOXA3P55318 MPDZ-211ENST00000536827 6176 ntAPPRIS ALT2 TSL 1 (best) BASIC3.88□□□□□ -1.79
FOXA3P55318 PSMD1-213ENST00000619128 3161 ntAPPRIS ALT1 TSL 5 BASIC3.88□□□□□ -1.79
FOXA3P55318 AKAP4-201ENST00000358526 2881 ntTSL 1 (best) BASIC3.88□□□□□ -1.79
FOXA3P55318 SYNE2-203ENST00000357395 21555 ntTSL 5 BASIC3.88□□□□□ -1.79
FOXA3P55318 PRIM2-201ENST00000274891 864 ntTSL 1 (best) BASIC3.88□□□□□ -1.79
FOXA3P55318 TERB2-201ENST00000340827 1281 ntAPPRIS P1 TSL 1 (best) BASIC3.88□□□□□ -1.79
FOXA3P55318 TSLP-201ENST00000344895 736 ntAPPRIS P2 TSL 1 (best) BASIC3.88□□□□□ -1.79
FOXA3P55318 OR9A2-201ENST00000350513 1038 ntAPPRIS P1 BASIC3.88□□□□□ -1.79
FOXA3P55318 MIR137-201ENST00000385223 102 ntBASIC3.88□□□□□ -1.79
FOXA3P55318 RPL34-203ENST00000394668 853 ntAPPRIS P1 TSL 1 (best) BASIC3.88□□□□□ -1.79
FOXA3P55318 U3.32-201ENST00000408116 212 ntBASIC3.88□□□□□ -1.79
FOXA3P55318 AC105275.1-201ENST00000417794 491 ntTSL 3 BASIC3.88□□□□□ -1.79
FOXA3P55318 AC073521.1-201ENST00000418679 625 ntTSL 3 BASIC3.88□□□□□ -1.79
FOXA3P55318 AL139148.1-201ENST00000427122 680 ntBASIC3.88□□□□□ -1.79
FOXA3P55318 COX6CP13-201ENST00000428703 226 ntBASIC3.88□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 83.6 ms