Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 AC069272.1-201ENST00000514843 680 ntTSL 3 BASIC4.97□□□□□ -1.61
FOXA1P55317 TMEM97P2-201ENST00000517841 403 ntBASIC4.97□□□□□ -1.61
FOXA1P55317 AC012400.1-201ENST00000518452 381 ntBASIC4.97□□□□□ -1.61
FOXA1P55317 AC134775.1-201ENST00000531268 464 ntTSL 2 BASIC4.97□□□□□ -1.61
FOXA1P55317 AC090844.2-201ENST00000578802 436 ntTSL 4 BASIC4.97□□□□□ -1.61
FOXA1P55317 AC023389.2-201ENST00000580031 955 ntBASIC4.97□□□□□ -1.61
FOXA1P55317 AC011840.5-201ENST00000582125 771 ntBASIC4.97□□□□□ -1.61
FOXA1P55317 AP2S1-210ENST00000601649 315 ntTSL 3 BASIC4.97□□□□□ -1.61
FOXA1P55317 AC002128.2-201ENST00000604161 618 ntTSL 5 BASIC4.97□□□□□ -1.61
FOXA1P55317 AC126175.1-201ENST00000617041 758 ntBASIC4.97□□□□□ -1.61
FOXA1P55317 AC005840.5-201ENST00000619166 599 ntBASIC4.97□□□□□ -1.61
FOXA1P55317 NLRP11-202ENST00000589824 3231 ntAPPRIS ALT2 TSL 5 BASIC4.97□□□□□ -1.61
FOXA1P55317 STAU2-220ENST00000522695 2646 ntAPPRIS ALT1 TSL 1 (best) BASIC4.97□□□□□ -1.61
FOXA1P55317 EPB41L2-226ENST00000530757 4360 ntTSL 2 BASIC4.97□□□□□ -1.61
FOXA1P55317 AC245407.1-201ENST00000621489 2538 ntTSL 2 BASIC4.97□□□□□ -1.61
FOXA1P55317 ASAH2-204ENST00000447815 2311 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
FOXA1P55317 SMARCE1-208ENST00000474246 2124 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
FOXA1P55317 ZNF273-204ENST00000476120 2000 ntAPPRIS P1 TSL 3 BASIC4.97□□□□□ -1.61
FOXA1P55317 CLEC2B-201ENST00000228438 1700 ntAPPRIS P1 TSL 1 (best) BASIC4.97□□□□□ -1.61
FOXA1P55317 VNN2-206ENST00000525270 1608 ntAPPRIS ALT2 TSL 2 BASIC4.97□□□□□ -1.61
FOXA1P55317 FZD6-205ENST00000522566 3719 ntAPPRIS P1 TSL 1 (best) BASIC4.97□□□□□ -1.61
FOXA1P55317 LINC01677-205ENST00000635636 2362 ntTSL 5 BASIC4.97□□□□□ -1.61
FOXA1P55317 ZEB1-208ENST00000542815 3217 ntAPPRIS ALT2 TSL 2 BASIC4.97□□□□□ -1.61
FOXA1P55317 SDC2-204ENST00000519914 1318 ntTSL 2 BASIC4.97□□□□□ -1.61
FOXA1P55317 STAU2-210ENST00000521210 1950 ntTSL 2 BASIC4.96□□□□□ -1.61
FOXA1P55317 NUDT12-202ENST00000507423 1781 ntTSL 2 BASIC4.96□□□□□ -1.61
FOXA1P55317 SMG1P3-204ENST00000520823 3194 ntTSL 5 BASIC4.96□□□□□ -1.61
FOXA1P55317 WEE2-201ENST00000397541 3061 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.61
FOXA1P55317 SRPK2-201ENST00000357311 3700 ntAPPRIS P3 TSL 1 (best) BASIC4.96□□□□□ -1.61
FOXA1P55317 TET1P1-201ENST00000426627 2301 ntBASIC4.96□□□□□ -1.61
FOXA1P55317 AC011447.7-201ENST00000624228 1590 ntBASIC4.96□□□□□ -1.62
FOXA1P55317 OFD1P9Y-201ENST00000417699 1491 ntBASIC4.96□□□□□ -1.62
FOXA1P55317 FAP-203ENST00000443424 2598 ntTSL 2 BASIC4.96□□□□□ -1.62
FOXA1P55317 BANK1-203ENST00000444316 3141 ntTSL 2 BASIC4.96□□□□□ -1.62
FOXA1P55317 PMCHL2-202ENST00000450213 1917 ntTSL 1 (best) BASIC4.96□□□□□ -1.62
FOXA1P55317 RNASE9-201ENST00000338904 1049 ntAPPRIS P3 TSL 1 (best) BASIC4.96□□□□□ -1.62
FOXA1P55317 DPPA2P2-201ENST00000418220 897 ntBASIC4.96□□□□□ -1.62
FOXA1P55317 OR5M12P-201ENST00000423388 929 ntBASIC4.96□□□□□ -1.62
FOXA1P55317 RPS4XP16-201ENST00000427198 791 ntBASIC4.96□□□□□ -1.62
FOXA1P55317 FAM96AP1-201ENST00000430879 482 ntBASIC4.96□□□□□ -1.62
FOXA1P55317 AC107072.1-201ENST00000449007 110 ntTSL 3 BASIC4.96□□□□□ -1.62
FOXA1P55317 AL161630.1-201ENST00000450938 1299 ntTSL 1 (best) BASIC4.96□□□□□ -1.62
FOXA1P55317 AC016724.1-201ENST00000453215 421 ntBASIC4.96□□□□□ -1.62
FOXA1P55317 AL133445.1-201ENST00000467051 452 ntBASIC4.96□□□□□ -1.62
FOXA1P55317 AC012123.2-201ENST00000485809 248 ntBASIC4.96□□□□□ -1.62
FOXA1P55317 PPIAP19-201ENST00000486414 492 ntBASIC4.96□□□□□ -1.62
FOXA1P55317 RN7SL184P-201ENST00000488308 297 ntBASIC4.96□□□□□ -1.62
FOXA1P55317 AC020551.1-201ENST00000512036 539 ntTSL 3 BASIC4.96□□□□□ -1.62
FOXA1P55317 AC008663.1-201ENST00000519821 455 ntTSL 4 BASIC4.96□□□□□ -1.62
FOXA1P55317 AC113386.1-201ENST00000523584 381 ntTSL 5 BASIC4.96□□□□□ -1.62
FOXA1P55317 RPLP0-225ENST00000552292 720 ntTSL 2 BASIC4.96□□□□□ -1.62
FOXA1P55317 RNASE9-204ENST00000553541 1136 ntAPPRIS P3 TSL 1 (best) BASIC4.96□□□□□ -1.62
FOXA1P55317 RNASE9-206ENST00000554964 1101 ntAPPRIS P3 TSL 1 (best) BASIC4.96□□□□□ -1.62
FOXA1P55317 RNASE9-208ENST00000556208 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC4.96□□□□□ -1.62
FOXA1P55317 RNASE9-210ENST00000557209 1137 ntAPPRIS ALT2 TSL 1 (best) BASIC4.96□□□□□ -1.62
FOXA1P55317 AC009554.1-201ENST00000559251 399 ntTSL 5 BASIC4.96□□□□□ -1.62
FOXA1P55317 AC021351.1-202ENST00000561394 701 ntTSL 3 BASIC4.96□□□□□ -1.62
FOXA1P55317 AL031600.2-201ENST00000563223 307 ntTSL 5 BASIC4.96□□□□□ -1.62
FOXA1P55317 MYLK-221ENST00000583087 678 ntTSL 4 BASIC4.96□□□□□ -1.62
FOXA1P55317 AC069307.1-201ENST00000602820 447 ntBASIC4.96□□□□□ -1.62
FOXA1P55317 AC109309.2-201ENST00000612597 332 ntBASIC4.96□□□□□ -1.62
FOXA1P55317 AC037198.3-201ENST00000616754 526 ntBASIC4.96□□□□□ -1.62
FOXA1P55317 SHMT1-211ENST00000618902 378 ntTSL 5 BASIC4.96□□□□□ -1.62
FOXA1P55317 REV3L-214ENST00000619481 969 ntTSL 5 BASIC4.96□□□□□ -1.62
FOXA1P55317 AC136428.4-201ENST00000634254 1155 ntBASIC4.96□□□□□ -1.62
FOXA1P55317 MYOCOS-203ENST00000637303 564 ntAPPRIS P5 TSL 5 BASIC4.96□□□□□ -1.62
FOXA1P55317 WISP3-211ENST00000639360 1026 ntTSL 5 BASIC4.96□□□□□ -1.62
FOXA1P55317 RBM5-214ENST00000469838 2716 ntTSL 1 (best) BASIC4.96□□□□□ -1.62
FOXA1P55317 ST8SIA4-201ENST00000231461 6303 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.62
FOXA1P55317 ZC3H12B-201ENST00000338957 7256 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.62
FOXA1P55317 CYP4Z2P-201ENST00000423332 1512 ntBASIC4.96□□□□□ -1.62
FOXA1P55317 AL161911.1-202ENST00000464488 1534 ntAPPRIS P1 TSL 5 BASIC4.96□□□□□ -1.62
FOXA1P55317 CCDC178-209ENST00000579947 2925 ntAPPRIS ALT2 TSL 1 (best) BASIC4.96□□□□□ -1.62
FOXA1P55317 DNAH14-208ENST00000430092 13763 ntAPPRIS P1 TSL 5 BASIC4.96□□□□□ -1.62
FOXA1P55317 EXO1-201ENST00000348581 3192 ntAPPRIS P3 TSL 1 (best) BASIC4.96□□□□□ -1.62
FOXA1P55317 AL022393.1-201ENST00000625142 1677 ntBASIC4.96□□□□□ -1.62
FOXA1P55317 SLC26A7-210ENST00000617233 5257 ntAPPRIS P1 TSL 5 BASIC4.95□□□□□ -1.62
FOXA1P55317 HNF4G-203ENST00000396423 4209 ntAPPRIS P3 TSL 1 (best) BASIC4.95□□□□□ -1.62
FOXA1P55317 EEF1A1P14-201ENST00000421195 1376 ntBASIC4.95□□□□□ -1.62
FOXA1P55317 CLSPN-206ENST00000520551 4010 ntTSL 1 (best) BASIC4.95□□□□□ -1.62
FOXA1P55317 HIST1H1A-201ENST00000244573 648 ntAPPRIS P1 BASIC4.95□□□□□ -1.62
FOXA1P55317 CLPS-201ENST00000259938 526 ntAPPRIS P1 TSL 1 (best) BASIC4.95□□□□□ -1.62
FOXA1P55317 TMBIM4-201ENST00000286424 989 ntTSL 5 BASIC4.95□□□□□ -1.62
FOXA1P55317 RN7SKP269-201ENST00000365545 319 ntBASIC4.95□□□□□ -1.62
FOXA1P55317 IFNA8-201ENST00000380205 1039 ntAPPRIS P1 BASIC4.95□□□□□ -1.62
FOXA1P55317 SNORA2.3-201ENST00000383920 135 ntBASIC4.95□□□□□ -1.62
FOXA1P55317 CAPSL-201ENST00000397366 969 ntAPPRIS P1 TSL 3 BASIC4.95□□□□□ -1.62
FOXA1P55317 MIR1182-201ENST00000408363 97 ntBASIC4.95□□□□□ -1.62
FOXA1P55317 AC007738.1-201ENST00000413892 348 ntBASIC4.95□□□□□ -1.62
FOXA1P55317 TMEM196-203ENST00000422233 775 ntTSL 5 BASIC4.95□□□□□ -1.62
FOXA1P55317 AL360007.1-201ENST00000426166 349 ntTSL 3 BASIC4.95□□□□□ -1.62
FOXA1P55317 NANOGP4-201ENST00000427230 913 ntBASIC4.95□□□□□ -1.62
FOXA1P55317 RPL35AP21-201ENST00000437667 333 ntBASIC4.95□□□□□ -1.62
FOXA1P55317 RPS11P7-201ENST00000442125 465 ntBASIC4.95□□□□□ -1.62
FOXA1P55317 RPS4XP20-201ENST00000505751 772 ntBASIC4.95□□□□□ -1.62
FOXA1P55317 LINC02217-201ENST00000505844 687 ntTSL 2 BASIC4.95□□□□□ -1.62
FOXA1P55317 AC026782.2-201ENST00000510845 636 ntBASIC4.95□□□□□ -1.62
FOXA1P55317 AC105031.1-201ENST00000518550 476 ntBASIC4.95□□□□□ -1.62
FOXA1P55317 AC008705.1-201ENST00000518837 489 ntTSL 3 BASIC4.95□□□□□ -1.62
FOXA1P55317 LINC02553-201ENST00000529088 734 ntTSL 5 BASIC4.95□□□□□ -1.62
Retrieved 100 of 98,524 protein–RNA pairs in 82.3 ms