Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 ASAH1-232ENST00000636691 2472 ntTSL 5 BASIC6.24□□□□□ -1.41
BRCA1P38398 TRPC4-203ENST00000358477 2955 ntTSL 1 (best) BASIC6.24□□□□□ -1.41
BRCA1P38398 LRP2-201ENST00000263816 15808 ntAPPRIS P1 TSL 1 (best) BASIC6.24□□□□□ -1.41
BRCA1P38398 VIP-202ENST00000367244 1584 ntAPPRIS P4 TSL 1 (best) BASIC6.24□□□□□ -1.41
BRCA1P38398 SENP1-201ENST00000448372 4679 ntAPPRIS P2 TSL 1 (best) BASIC6.24□□□□□ -1.41
BRCA1P38398 MTCO1P15-201ENST00000529569 1526 ntBASIC6.24□□□□□ -1.41
BRCA1P38398 DSC1-202ENST00000257198 4225 ntAPPRIS P4 TSL 2 BASIC6.24□□□□□ -1.41
BRCA1P38398 MIR129-1-201ENST00000384972 72 ntBASIC6.24□□□□□ -1.41
BRCA1P38398 OR8V1P-201ENST00000395193 873 ntBASIC6.24□□□□□ -1.41
BRCA1P38398 RPL17P50-201ENST00000396131 546 ntBASIC6.24□□□□□ -1.41
BRCA1P38398 RN7SKP114-201ENST00000410327 279 ntBASIC6.24□□□□□ -1.41
BRCA1P38398 AL391704.2-201ENST00000418379 981 ntTSL 1 (best) BASIC6.24□□□□□ -1.41
BRCA1P38398 TXNDC12-AS1-201ENST00000428794 391 ntTSL 3 BASIC6.24□□□□□ -1.41
BRCA1P38398 AL122010.1-201ENST00000429293 720 ntTSL 2 BASIC6.24□□□□□ -1.41
BRCA1P38398 AC023141.6-201ENST00000429418 337 ntBASIC6.24□□□□□ -1.41
BRCA1P38398 AC124944.2-201ENST00000429866 1242 ntBASIC6.24□□□□□ -1.41
BRCA1P38398 LINC00375-201ENST00000433074 601 ntTSL 5 BASIC6.24□□□□□ -1.41
BRCA1P38398 AC092159.1-201ENST00000433724 493 ntTSL 2 BASIC6.24□□□□□ -1.41
BRCA1P38398 RPL23AP56-201ENST00000460778 453 ntBASIC6.24□□□□□ -1.41
BRCA1P38398 AC068413.1-201ENST00000517739 776 ntTSL 5 BASIC6.24□□□□□ -1.41
BRCA1P38398 HMGB1P23-201ENST00000518743 568 ntBASIC6.24□□□□□ -1.41
BRCA1P38398 AC083923.2-201ENST00000519880 574 ntTSL 4 BASIC6.24□□□□□ -1.41
BRCA1P38398 AC002428.2-201ENST00000522973 414 ntTSL 3 BASIC6.24□□□□□ -1.41
BRCA1P38398 SDHAF2-208ENST00000543265 438 ntTSL 5 BASIC6.24□□□□□ -1.41
BRCA1P38398 AC006504.2-201ENST00000589471 458 ntTSL 3 BASIC6.24□□□□□ -1.41
BRCA1P38398 SPINK5-202ENST00000359874 3656 ntAPPRIS ALT2 TSL 1 (best) BASIC6.24□□□□□ -1.41
BRCA1P38398 PIGN-247ENST00000640540 4720 ntTSL 5 BASIC6.24□□□□□ -1.41
BRCA1P38398 THRB-202ENST00000356447 6345 ntAPPRIS P2 TSL 1 (best) BASIC6.23□□□□□ -1.41
BRCA1P38398 TRIM22-201ENST00000379965 2989 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
BRCA1P38398 RPE65-201ENST00000262340 2610 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
BRCA1P38398 ZNF969P-201ENST00000510345 2341 ntBASIC6.23□□□□□ -1.41
BRCA1P38398 UNC80-201ENST00000272845 13440 ntTSL 5 BASIC6.23□□□□□ -1.41
BRCA1P38398 R3HCC1L-201ENST00000298999 3379 ntAPPRIS P1 TSL 5 BASIC6.23□□□□□ -1.41
BRCA1P38398 GFPT1-202ENST00000361060 8632 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
BRCA1P38398 FLJ12825-201ENST00000515617 3942 ntTSL 2 BASIC6.23□□□□□ -1.41
BRCA1P38398 RNA5SP28-201ENST00000363841 119 ntBASIC6.23□□□□□ -1.41
BRCA1P38398 APOA2-201ENST00000367990 474 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
BRCA1P38398 ITCH-IT1-201ENST00000418598 208 ntTSL 3 BASIC6.23□□□□□ -1.41
BRCA1P38398 FABP7P1-201ENST00000424004 391 ntBASIC6.23□□□□□ -1.41
BRCA1P38398 LINC01133-202ENST00000443364 1266 ntTSL 5 BASIC6.23□□□□□ -1.41
BRCA1P38398 AC000111.2-201ENST00000448200 210 ntBASIC6.23□□□□□ -1.41
BRCA1P38398 TCEA1P1-201ENST00000449716 880 ntBASIC6.23□□□□□ -1.41
BRCA1P38398 IGHV5-78-201ENST00000450948 295 ntBASIC6.23□□□□□ -1.41
BRCA1P38398 AC011276.1-201ENST00000469688 323 ntBASIC6.23□□□□□ -1.41
BRCA1P38398 AC010451.1-201ENST00000509057 556 ntTSL 3 BASIC6.23□□□□□ -1.41
BRCA1P38398 AC010261.2-201ENST00000515563 588 ntTSL 2 BASIC6.23□□□□□ -1.41
BRCA1P38398 AC073023.1-201ENST00000522896 773 ntTSL 5 BASIC6.23□□□□□ -1.41
BRCA1P38398 AC009063.2-203ENST00000567860 745 ntTSL 2 BASIC6.23□□□□□ -1.41
BRCA1P38398 MIR4715-201ENST00000584117 79 ntBASIC6.23□□□□□ -1.41
BRCA1P38398 AC005537.1-201ENST00000588324 1238 ntTSL 1 (best) BASIC6.23□□□□□ -1.41
BRCA1P38398 MIR7515HG-226ENST00000588330 1055 ntTSL 5 BASIC6.23□□□□□ -1.41
BRCA1P38398 AC015911.9-201ENST00000591634 185 ntTSL 5 BASIC6.23□□□□□ -1.41
BRCA1P38398 Metazoa_SRP.93-201ENST00000622525 276 ntBASIC6.23□□□□□ -1.41
BRCA1P38398 ZBTB21-205ENST00000398511 5608 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
BRCA1P38398 HSPD1P8-201ENST00000400121 1658 ntBASIC6.23□□□□□ -1.41
BRCA1P38398 ZNF652-201ENST00000362063 5988 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
BRCA1P38398 SCAPER-203ENST00000538941 4853 ntTSL 1 (best) BASIC6.23□□□□□ -1.41
BRCA1P38398 ZNF19-206ENST00000565100 2087 ntTSL 5 BASIC6.23□□□□□ -1.41
BRCA1P38398 SPRY3-201ENST00000302805 9019 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
BRCA1P38398 NUP107-202ENST00000378905 2859 ntTSL 5 BASIC6.22□□□□□ -1.41
BRCA1P38398 ARHGEF6-201ENST00000250617 6019 ntAPPRIS P1 TSL 1 (best) BASIC6.22□□□□□ -1.41
BRCA1P38398 RPL31-204ENST00000409038 817 ntTSL 2 BASIC6.22□□□□□ -1.41
BRCA1P38398 CENPIP1-201ENST00000425713 902 ntBASIC6.22□□□□□ -1.41
BRCA1P38398 NPM1P42-201ENST00000560329 862 ntBASIC6.22□□□□□ -1.41
BRCA1P38398 NRXN1-223ENST00000625891 1164 ntTSL 4 BASIC6.22□□□□□ -1.41
BRCA1P38398 OR52N4-202ENST00000641350 1276 ntAPPRIS P1 BASIC6.22□□□□□ -1.41
BRCA1P38398 OR2J1-202ENST00000641659 2144 ntAPPRIS P1 BASIC6.22□□□□□ -1.41
BRCA1P38398 ADAMTS9-201ENST00000295903 7060 ntTSL 1 (best) BASIC6.22□□□□□ -1.41
BRCA1P38398 AP001267.1-201ENST00000531742 2074 ntTSL 2 BASIC6.22□□□□□ -1.41
BRCA1P38398 MYOF-202ENST00000359263 6719 ntAPPRIS P1 TSL 1 (best) BASIC6.22□□□□□ -1.41
BRCA1P38398 AC073365.1-203ENST00000641055 1992 ntBASIC6.22□□□□□ -1.41
BRCA1P38398 SMARCA2-206ENST00000382185 1584 ntTSL 2 BASIC6.22□□□□□ -1.41
BRCA1P38398 LINC01541-202ENST00000568095 3105 ntTSL 1 (best) BASIC6.22□□□□□ -1.41
BRCA1P38398 SCIN-201ENST00000297029 9713 ntAPPRIS P1 TSL 1 (best) BASIC6.22□□□□□ -1.41
BRCA1P38398 GOLGA6L22-204ENST00000622895 4178 ntAPPRIS P5 TSL 5 BASIC6.22□□□□□ -1.41
BRCA1P38398 EEF1A1-210ENST00000610520 3447 ntTSL 5 BASIC6.22□□□□□ -1.41
BRCA1P38398 ZNF573-201ENST00000339503 2014 ntTSL 5 BASIC6.22□□□□□ -1.41
BRCA1P38398 RUFY3-201ENST00000226328 4233 ntTSL 1 (best) BASIC6.22□□□□□ -1.41
BRCA1P38398 TLR4-201ENST00000355622 4844 ntAPPRIS P1 TSL 1 (best) BASIC6.22□□□□□ -1.41
BRCA1P38398 PLIN2-202ENST00000380464 655 ntTSL 2 BASIC6.22□□□□□ -1.41
BRCA1P38398 AL157378.1-201ENST00000424506 265 ntTSL 5 BASIC6.22□□□□□ -1.41
BRCA1P38398 AL353801.1-201ENST00000425541 425 ntTSL 3 BASIC6.22□□□□□ -1.41
BRCA1P38398 AL162384.1-201ENST00000437881 499 ntTSL 2 BASIC6.22□□□□□ -1.41
BRCA1P38398 LINC01754-201ENST00000437920 750 ntTSL 3 BASIC6.22□□□□□ -1.41
BRCA1P38398 ARL2BPP10-201ENST00000446487 531 ntBASIC6.22□□□□□ -1.41
BRCA1P38398 RPL7P41-201ENST00000485823 957 ntBASIC6.22□□□□□ -1.41
BRCA1P38398 LINC02055-205ENST00000521090 774 ntTSL 3 BASIC6.22□□□□□ -1.41
BRCA1P38398 AC110275.1-201ENST00000534420 623 ntAPPRIS P1 TSL 4 BASIC6.22□□□□□ -1.41
BRCA1P38398 LINC02306-201ENST00000546412 529 ntTSL 3 BASIC6.22□□□□□ -1.41
BRCA1P38398 AC084824.1-201ENST00000550917 1005 ntBASIC6.22□□□□□ -1.41
BRCA1P38398 AL133485.1-201ENST00000555966 392 ntTSL 2 BASIC6.22□□□□□ -1.41
BRCA1P38398 POU1F1-203ENST00000560656 647 ntTSL 5 BASIC6.22□□□□□ -1.41
BRCA1P38398 NUDT7-203ENST00000563839 316 ntTSL 3 BASIC6.22□□□□□ -1.41
BRCA1P38398 KPNA2P3-201ENST00000584190 848 ntBASIC6.22□□□□□ -1.41
BRCA1P38398 AC005191.1-201ENST00000603950 358 ntBASIC6.22□□□□□ -1.41
BRCA1P38398 AC021106.3-201ENST00000623925 531 ntBASIC6.22□□□□□ -1.41
BRCA1P38398 TPK1-207ENST00000538212 2243 ntTSL 2 BASIC6.22□□□□□ -1.41
BRCA1P38398 TTC39B-208ENST00000512701 10483 ntAPPRIS P3 TSL 2 BASIC6.22□□□□□ -1.41
BRCA1P38398 LMO7-202ENST00000341547 7237 ntAPPRIS P3 TSL 1 (best) BASIC6.21□□□□□ -1.41
BRCA1P38398 ZFP37-201ENST00000374227 6266 ntAPPRIS P3 TSL 1 (best) BASIC6.21□□□□□ -1.41
Retrieved 100 of 98,524 protein–RNA pairs in 118.1 ms