Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 AC080013.1-206ENST00000496842 712 ntTSL 2 BASIC5.04□□□□□ -1.6
COL5A1P20908 IMPA1P1-201ENST00000510718 842 ntBASIC5.04□□□□□ -1.6
COL5A1P20908 RN7SKP260-201ENST00000516907 149 ntBASIC5.04□□□□□ -1.6
COL5A1P20908 AC025263.2-201ENST00000550437 548 ntAPPRIS P1 TSL 5 BASIC5.04□□□□□ -1.6
COL5A1P20908 AC011473.2-201ENST00000596286 240 ntTSL 3 BASIC5.04□□□□□ -1.6
COL5A1P20908 AC009237.13-201ENST00000603193 276 ntBASIC5.04□□□□□ -1.6
COL5A1P20908 AP005131.7-201ENST00000610087 611 ntBASIC5.04□□□□□ -1.6
COL5A1P20908 AJ009632.2-207ENST00000634659 527 ntTSL 5 BASIC5.04□□□□□ -1.6
COL5A1P20908 FAM184A-204ENST00000368475 3392 ntTSL 2 BASIC5.04□□□□□ -1.6
COL5A1P20908 FAM216B-201ENST00000313851 3243 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
COL5A1P20908 LARP4-202ENST00000347328 3621 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
COL5A1P20908 PDE4D-228ENST00000636120 6659 ntTSL 5 BASIC5.04□□□□□ -1.6
COL5A1P20908 NCOR1-201ENST00000268712 10720 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
COL5A1P20908 AC008040.1-202ENST00000483289 6251 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
COL5A1P20908 MID1-209ENST00000453318 6393 ntAPPRIS P1 TSL 5 BASIC5.04□□□□□ -1.6
COL5A1P20908 POT1-AS1-205ENST00000453342 3252 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
COL5A1P20908 NAV1-201ENST00000367295 11645 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
COL5A1P20908 OR2D2-201ENST00000299459 1110 ntAPPRIS P1 BASIC5.04□□□□□ -1.6
COL5A1P20908 MIR600-201ENST00000385007 98 ntBASIC5.04□□□□□ -1.6
COL5A1P20908 NUDT19P3-201ENST00000404698 555 ntBASIC5.04□□□□□ -1.6
COL5A1P20908 TRBV29-1-201ENST00000422143 402 ntAPPRIS P1 BASIC5.04□□□□□ -1.6
COL5A1P20908 LINC01690-201ENST00000424837 576 ntTSL 2 BASIC5.04□□□□□ -1.6
COL5A1P20908 AC092811.1-201ENST00000428642 397 ntTSL 3 BASIC5.04□□□□□ -1.6
COL5A1P20908 AC093414.1-201ENST00000434712 514 ntBASIC5.04□□□□□ -1.6
COL5A1P20908 AC245427.2-201ENST00000438839 263 ntTSL 3 BASIC5.04□□□□□ -1.6
COL5A1P20908 PARGP1-202ENST00000440803 790 ntTSL 2 BASIC5.04□□□□□ -1.6
COL5A1P20908 OR7E125P-201ENST00000443450 846 ntBASIC5.04□□□□□ -1.6
COL5A1P20908 RPS23P7-201ENST00000466210 444 ntBASIC5.04□□□□□ -1.6
COL5A1P20908 AC103987.1-201ENST00000473394 348 ntBASIC5.04□□□□□ -1.6
COL5A1P20908 AC012629.1-201ENST00000503953 342 ntTSL 3 BASIC5.04□□□□□ -1.6
COL5A1P20908 BTF3P13-201ENST00000513224 490 ntBASIC5.04□□□□□ -1.6
COL5A1P20908 AC006427.1-201ENST00000514359 712 ntBASIC5.04□□□□□ -1.6
COL5A1P20908 AP001381.1-201ENST00000584109 534 ntTSL 5 BASIC5.04□□□□□ -1.6
COL5A1P20908 MEMO1P5-201ENST00000604810 406 ntBASIC5.04□□□□□ -1.6
COL5A1P20908 AL391358.1-201ENST00000605342 190 ntBASIC5.04□□□□□ -1.6
COL5A1P20908 MIR6780A-201ENST00000615089 68 ntBASIC5.04□□□□□ -1.6
COL5A1P20908 CCL4L2-215ENST00000620055 537 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
COL5A1P20908 CCL4L2-217ENST00000620250 667 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
COL5A1P20908 CCL4-203ENST00000621626 552 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
COL5A1P20908 AC012414.7-202ENST00000622705 1090 ntBASIC5.04□□□□□ -1.6
COL5A1P20908 SNHG5-214ENST00000623001 598 ntTSL 2 BASIC5.04□□□□□ -1.6
COL5A1P20908 AC078842.2-201ENST00000447529 1835 ntTSL 2 BASIC5.04□□□□□ -1.6
COL5A1P20908 AC100871.1-201ENST00000507871 1456 ntBASIC5.04□□□□□ -1.6
COL5A1P20908 MECOM-203ENST00000460814 3374 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
COL5A1P20908 NCOA3-201ENST00000371997 6750 ntAPPRIS ALT2 TSL 1 (best) BASIC5.04□□□□□ -1.6
COL5A1P20908 EIF3E-206ENST00000519030 1324 ntTSL 5 BASIC5.04□□□□□ -1.6
COL5A1P20908 AL137918.1-201ENST00000624542 1922 ntBASIC5.03□□□□□ -1.6
COL5A1P20908 GAPVD1-202ENST00000297933 6003 ntAPPRIS ALT2 TSL 1 (best) BASIC5.03□□□□□ -1.6
COL5A1P20908 SMCO1-201ENST00000397537 1812 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
COL5A1P20908 FGL2-201ENST00000248598 4261 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
COL5A1P20908 TRPM6-202ENST00000360774 8425 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
COL5A1P20908 TTN-AS1-203ENST00000419746 4592 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
COL5A1P20908 STAG2-201ENST00000218089 5218 ntAPPRIS ALT1 TSL 1 (best) BASIC5.03□□□□□ -1.6
COL5A1P20908 RBM28-201ENST00000223073 15507 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
COL5A1P20908 FAM3C2-201ENST00000312214 681 ntBASIC5.03□□□□□ -1.6
COL5A1P20908 ZNF292-202ENST00000369577 10610 ntAPPRIS P2 TSL 1 (best) BASIC5.03□□□□□ -1.6
COL5A1P20908 NPM1P36-201ENST00000415681 835 ntBASIC5.03□□□□□ -1.6
COL5A1P20908 AC073465.2-201ENST00000440938 498 ntBASIC5.03□□□□□ -1.6
COL5A1P20908 LINC02096-201ENST00000445035 953 ntTSL 5 BASIC5.03□□□□□ -1.6
COL5A1P20908 AC091180.1-201ENST00000462104 372 ntBASIC5.03□□□□□ -1.6
COL5A1P20908 AC026402.1-201ENST00000513642 170 ntBASIC5.03□□□□□ -1.6
COL5A1P20908 TOMM20P2-201ENST00000540082 421 ntBASIC5.03□□□□□ -1.6
COL5A1P20908 AC233699.1-201ENST00000569955 1168 ntBASIC5.03□□□□□ -1.6
COL5A1P20908 AC015912.1-201ENST00000574826 538 ntTSL 3 BASIC5.03□□□□□ -1.6
COL5A1P20908 RN7SL690P-201ENST00000582087 240 ntBASIC5.03□□□□□ -1.6
COL5A1P20908 AC098935.2-201ENST00000604222 466 ntBASIC5.03□□□□□ -1.6
COL5A1P20908 AC005377.1-201ENST00000605126 456 ntBASIC5.03□□□□□ -1.6
COL5A1P20908 AC244107.2-201ENST00000611773 76 ntBASIC5.03□□□□□ -1.6
COL5A1P20908 AL449283.1-201ENST00000602631 3403 ntBASIC5.03□□□□□ -1.6
COL5A1P20908 LRRC37A3-204ENST00000400877 3273 ntTSL 2 BASIC5.03□□□□□ -1.6
COL5A1P20908 BX284613.1-201ENST00000452221 1641 ntBASIC5.03□□□□□ -1.6
COL5A1P20908 KCNA2-209ENST00000639048 10836 ntTSL 5 BASIC5.03□□□□□ -1.6
COL5A1P20908 ALB-219ENST00000621085 1418 ntTSL 5 BASIC5.03□□□□□ -1.6
COL5A1P20908 ZC3H12C-201ENST00000278590 8807 ntTSL 2 BASIC5.03□□□□□ -1.6
COL5A1P20908 AL354696.2-201ENST00000619407 1910 ntTSL 2 BASIC5.03□□□□□ -1.6
COL5A1P20908 IPO11-203ENST00000409534 1725 ntTSL 2 BASIC5.02□□□□□ -1.61
COL5A1P20908 RNF213-220ENST00000582970 21055 ntAPPRIS P2 TSL 1 (best) BASIC5.02□□□□□ -1.61
COL5A1P20908 AL162425.1-201ENST00000423637 1525 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
COL5A1P20908 CASP1-208ENST00000527979 1521 ntTSL 5 BASIC5.02□□□□□ -1.61
COL5A1P20908 AC079741.1-201ENST00000321498 212 ntBASIC5.02□□□□□ -1.61
COL5A1P20908 MAX-203ENST00000341653 330 ntTSL 2 BASIC5.02□□□□□ -1.61
COL5A1P20908 SNORA70.2-201ENST00000364506 135 ntBASIC5.02□□□□□ -1.61
COL5A1P20908 AL390036.1-201ENST00000419428 734 ntTSL 5 BASIC5.02□□□□□ -1.61
COL5A1P20908 RPL17P36-201ENST00000420302 549 ntBASIC5.02□□□□□ -1.61
COL5A1P20908 MRPS21P2-201ENST00000424704 264 ntBASIC5.02□□□□□ -1.61
COL5A1P20908 MTND2P40-201ENST00000436718 841 ntBASIC5.02□□□□□ -1.61
COL5A1P20908 AL591719.2-201ENST00000437400 386 ntTSL 3 BASIC5.02□□□□□ -1.61
COL5A1P20908 KRTAP5-14P-201ENST00000502328 121 ntBASIC5.02□□□□□ -1.61
COL5A1P20908 SPRY4-AS1-205ENST00000514303 152 ntTSL 3 BASIC5.02□□□□□ -1.61
COL5A1P20908 IGHVIII-47-1-201ENST00000518187 331 ntBASIC5.02□□□□□ -1.61
COL5A1P20908 LINC02313-201ENST00000553330 550 ntTSL 2 BASIC5.02□□□□□ -1.61
COL5A1P20908 CR381572.2-201ENST00000624852 397 ntBASIC5.02□□□□□ -1.61
COL5A1P20908 OGT-202ENST00000373719 5461 ntAPPRIS P3 TSL 1 (best) BASIC5.02□□□□□ -1.61
COL5A1P20908 MTX3-203ENST00000512560 4799 ntTSL 2 BASIC5.02□□□□□ -1.61
COL5A1P20908 MIR99AHG-219ENST00000619222 3476 ntTSL 2 BASIC5.02□□□□□ -1.61
COL5A1P20908 FOXN2-203ENST00000616844 1414 ntTSL 5 BASIC5.02□□□□□ -1.61
COL5A1P20908 ZNF644-204ENST00000370440 5702 ntAPPRIS P1 TSL 5 BASIC5.02□□□□□ -1.61
COL5A1P20908 VPS13A-202ENST00000357409 9967 ntAPPRIS ALT2 TSL 1 (best) BASIC5.02□□□□□ -1.61
COL5A1P20908 FGF1-214ENST00000612258 3805 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
COL5A1P20908 AC007159.1-201ENST00000566529 4706 ntBASIC5.02□□□□□ -1.61
Retrieved 100 of 98,524 protein–RNA pairs in 72.6 ms