Protein–RNA interactions for Protein: P06340

HLA-DOA, HLA class II histocompatibility antigen, DO alpha chain, humanhuman

Predictions only

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOAP06340 RAPH1-209ENST00000439222 1854 ntAPPRIS ALT2 TSL 5 BASIC6.55□□□□□ -1.36
HLA-DOAP06340 FOXN2-201ENST00000340553 5408 ntAPPRIS P1 TSL 1 (best) BASIC6.55□□□□□ -1.36
HLA-DOAP06340 PLEKHA1-201ENST00000368988 3872 ntTSL 5 BASIC6.55□□□□□ -1.36
HLA-DOAP06340 MTTP-203ENST00000457717 4092 ntAPPRIS P1 TSL 5 BASIC6.55□□□□□ -1.36
HLA-DOAP06340 AQP4-201ENST00000383168 5274 ntAPPRIS P1 TSL 1 (best) BASIC6.55□□□□□ -1.36
HLA-DOAP06340 SLC4A7-206ENST00000428386 7385 ntTSL 1 (best) BASIC6.55□□□□□ -1.36
HLA-DOAP06340 DPP8-203ENST00000341861 8699 ntAPPRIS P4 TSL 2 BASIC6.54□□□□□ -1.36
HLA-DOAP06340 RPL23AP82-206ENST00000480246 2987 ntTSL 1 (best) BASIC6.54□□□□□ -1.36
HLA-DOAP06340 FAM229B-201ENST00000368656 2543 ntAPPRIS P1 TSL 1 (best) BASIC6.54□□□□□ -1.36
HLA-DOAP06340 AL645568.2-201ENST00000432815 1337 ntBASIC6.54□□□□□ -1.36
HLA-DOAP06340 AC109780.1-201ENST00000451768 1344 ntBASIC6.54□□□□□ -1.36
HLA-DOAP06340 VPS50-220ENST00000544910 5736 ntTSL 2 BASIC6.54□□□□□ -1.36
HLA-DOAP06340 BDNF-210ENST00000438929 4059 ntTSL 1 (best) BASIC6.54□□□□□ -1.36
HLA-DOAP06340 BCORP1-203ENST00000513194 5093 ntBASIC6.54□□□□□ -1.36
HLA-DOAP06340 CLVS1-203ENST00000518592 2880 ntTSL 1 (best) BASIC6.54□□□□□ -1.36
HLA-DOAP06340 NRDC-213ENST00000539524 3417 ntAPPRIS ALT2 TSL 1 (best) BASIC6.54□□□□□ -1.36
HLA-DOAP06340 CRYAB-201ENST00000227251 848 ntAPPRIS P1 TSL 5 BASIC6.54□□□□□ -1.36
HLA-DOAP06340 IFNG-201ENST00000229135 1218 ntAPPRIS P1 TSL 1 (best) BASIC6.54□□□□□ -1.36
HLA-DOAP06340 CCDC169-202ENST00000239860 716 ntTSL 1 (best) BASIC6.54□□□□□ -1.36
HLA-DOAP06340 OR5H1-201ENST00000354565 942 ntAPPRIS P1 BASIC6.54□□□□□ -1.36
HLA-DOAP06340 AL121886.1-201ENST00000358609 435 ntBASIC6.54□□□□□ -1.36
HLA-DOAP06340 Y_RNA.62-201ENST00000362840 99 ntBASIC6.54□□□□□ -1.36
HLA-DOAP06340 TEX36-201ENST00000368821 922 ntAPPRIS P3 TSL 1 (best) BASIC6.54□□□□□ -1.36
HLA-DOAP06340 GNG5P2-201ENST00000372054 207 ntBASIC6.54□□□□□ -1.36
HLA-DOAP06340 AC005042.1-201ENST00000393397 800 ntBASIC6.54□□□□□ -1.36
HLA-DOAP06340 MRM2-202ENST00000407040 582 ntTSL 3 BASIC6.54□□□□□ -1.36
HLA-DOAP06340 DPPA2P3-201ENST00000411853 655 ntBASIC6.54□□□□□ -1.36
HLA-DOAP06340 AL139148.1-201ENST00000427122 680 ntBASIC6.54□□□□□ -1.36
HLA-DOAP06340 PCBP1-AS1-232ENST00000442040 1111 ntTSL 3 BASIC6.54□□□□□ -1.36
HLA-DOAP06340 RPS26P41-201ENST00000450370 284 ntBASIC6.54□□□□□ -1.36
HLA-DOAP06340 AC079841.1-201ENST00000481228 950 ntBASIC6.54□□□□□ -1.36
HLA-DOAP06340 RN7SL727P-201ENST00000482164 296 ntBASIC6.54□□□□□ -1.36
HLA-DOAP06340 PDCL3P4-201ENST00000489621 720 ntBASIC6.54□□□□□ -1.36
HLA-DOAP06340 RPL5P23-201ENST00000496040 868 ntBASIC6.54□□□□□ -1.36
HLA-DOAP06340 AC082651.2-201ENST00000496833 166 ntBASIC6.54□□□□□ -1.36
HLA-DOAP06340 CCDC169-211ENST00000503173 837 ntTSL 1 (best) BASIC6.54□□□□□ -1.36
HLA-DOAP06340 NAMPTP2-201ENST00000505629 1115 ntBASIC6.54□□□□□ -1.36
HLA-DOAP06340 SCARNA16.4-201ENST00000516956 187 ntBASIC6.54□□□□□ -1.36
HLA-DOAP06340 AC090739.1-201ENST00000522190 708 ntTSL 3 BASIC6.54□□□□□ -1.36
HLA-DOAP06340 AC104257.1-202ENST00000524275 884 ntTSL 3 BASIC6.54□□□□□ -1.36
HLA-DOAP06340 AP005436.1-201ENST00000531454 488 ntTSL 2 BASIC6.54□□□□□ -1.36
HLA-DOAP06340 AC137627.1-201ENST00000545761 289 ntBASIC6.54□□□□□ -1.36
HLA-DOAP06340 AC092078.1-201ENST00000558370 325 ntTSL 3 BASIC6.54□□□□□ -1.36
HLA-DOAP06340 AC044860.2-201ENST00000561005 179 ntBASIC6.54□□□□□ -1.36
HLA-DOAP06340 GOLGA8M-203ENST00000568033 557 ntTSL 4 BASIC6.54□□□□□ -1.36
HLA-DOAP06340 AC113418.1-201ENST00000569928 517 ntTSL 1 (best) BASIC6.54□□□□□ -1.36
HLA-DOAP06340 AC024267.4-201ENST00000580782 683 ntTSL 1 (best) BASIC6.54□□□□□ -1.36
HLA-DOAP06340 AL121652.1-201ENST00000608851 448 ntBASIC6.54□□□□□ -1.36
HLA-DOAP06340 OR7M1P-201ENST00000608946 533 ntBASIC6.54□□□□□ -1.36
HLA-DOAP06340 AC069542.2-201ENST00000624816 216 ntBASIC6.54□□□□□ -1.36
HLA-DOAP06340 TPK1-207ENST00000538212 2243 ntTSL 2 BASIC6.54□□□□□ -1.36
HLA-DOAP06340 LIN7C-201ENST00000278193 4688 ntAPPRIS P1 TSL 1 (best) BASIC6.54□□□□□ -1.36
HLA-DOAP06340 AC097634.1-201ENST00000604491 2467 ntBASIC6.54□□□□□ -1.36
HLA-DOAP06340 GPR85-202ENST00000424100 2895 ntAPPRIS P1 TSL 1 (best) BASIC6.54□□□□□ -1.36
HLA-DOAP06340 INSIG2-208ENST00000614681 1347 ntTSL 5 BASIC6.53□□□□□ -1.36
HLA-DOAP06340 CFL2-201ENST00000298159 6747 ntAPPRIS P1 TSL 1 (best) BASIC6.53□□□□□ -1.36
HLA-DOAP06340 PAK3-202ENST00000360648 2241 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
HLA-DOAP06340 ARHGAP24-201ENST00000264343 4572 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
HLA-DOAP06340 SYTL2-208ENST00000524452 2733 ntAPPRIS P3 TSL 2 BASIC6.53□□□□□ -1.36
HLA-DOAP06340 AL158152.1-201ENST00000602652 1435 ntBASIC6.53□□□□□ -1.36
HLA-DOAP06340 PLCB1-211ENST00000617005 6458 ntTSL 5 BASIC6.53□□□□□ -1.36
HLA-DOAP06340 NAV3-201ENST00000397909 9821 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
HLA-DOAP06340 ZNF559-ZNF177-201ENST00000434737 2340 ntAPPRIS ALT2 TSL 2 BASIC6.53□□□□□ -1.36
HLA-DOAP06340 CACNA2D3-210ENST00000490478 3557 ntAPPRIS ALT2 TSL 1 (best) BASIC6.53□□□□□ -1.36
HLA-DOAP06340 DOCK10-202ENST00000409592 7288 ntAPPRIS ALT2 TSL 1 (best) BASIC6.53□□□□□ -1.36
HLA-DOAP06340 RNA5SP326-201ENST00000363209 110 ntBASIC6.53□□□□□ -1.36
HLA-DOAP06340 SSX3-202ENST00000376893 800 ntTSL 2 BASIC6.53□□□□□ -1.36
HLA-DOAP06340 SNORA70-201ENST00000384436 135 ntBASIC6.53□□□□□ -1.36
HLA-DOAP06340 AC025946.1-201ENST00000413286 430 ntTSL 3 BASIC6.53□□□□□ -1.36
HLA-DOAP06340 AC007161.1-204ENST00000423039 460 ntBASIC6.53□□□□□ -1.36
HLA-DOAP06340 DSTNP5-201ENST00000427921 523 ntBASIC6.53□□□□□ -1.36
HLA-DOAP06340 FAM96AP1-201ENST00000430879 482 ntBASIC6.53□□□□□ -1.36
HLA-DOAP06340 AL139121.1-201ENST00000445647 244 ntTSL 2 BASIC6.53□□□□□ -1.36
HLA-DOAP06340 GIMAP2-202ENST00000474605 309 ntTSL 3 BASIC6.53□□□□□ -1.36
HLA-DOAP06340 TRBV8-1-201ENST00000481590 279 ntBASIC6.53□□□□□ -1.36
HLA-DOAP06340 LINC01612-201ENST00000504509 469 ntTSL 3 BASIC6.53□□□□□ -1.36
HLA-DOAP06340 LINC02117-201ENST00000513673 540 ntTSL 4 BASIC6.53□□□□□ -1.36
HLA-DOAP06340 AC093305.1-201ENST00000514105 522 ntTSL 5 BASIC6.53□□□□□ -1.36
HLA-DOAP06340 AC106895.1-201ENST00000515825 548 ntTSL 4 BASIC6.53□□□□□ -1.36
HLA-DOAP06340 AC009623.1-201ENST00000517964 1131 ntTSL 2 BASIC6.53□□□□□ -1.36
HLA-DOAP06340 AP001636.2-201ENST00000525517 696 ntBASIC6.53□□□□□ -1.36
HLA-DOAP06340 AC066613.1-201ENST00000559977 1053 ntTSL 2 BASIC6.53□□□□□ -1.36
HLA-DOAP06340 AGGF1P5-201ENST00000567900 919 ntBASIC6.53□□□□□ -1.36
HLA-DOAP06340 AP005209.1-201ENST00000582531 928 ntTSL 5 BASIC6.53□□□□□ -1.36
HLA-DOAP06340 AL136164.2-201ENST00000602823 732 ntTSL 5 BASIC6.53□□□□□ -1.36
HLA-DOAP06340 AL450270.1-201ENST00000606160 391 ntBASIC6.53□□□□□ -1.36
HLA-DOAP06340 AL355802.4-201ENST00000607635 548 ntBASIC6.53□□□□□ -1.36
HLA-DOAP06340 C8orf59-210ENST00000614462 734 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
HLA-DOAP06340 AC009159.2-201ENST00000617603 606 ntBASIC6.53□□□□□ -1.36
HLA-DOAP06340 RBMS3-AS3-202ENST00000635847 738 ntTSL 5 BASIC6.53□□□□□ -1.36
HLA-DOAP06340 TMEM30CP-203ENST00000637814 1035 ntBASIC6.53□□□□□ -1.36
HLA-DOAP06340 AC144833.1-201ENST00000567953 4089 ntBASIC6.53□□□□□ -1.36
HLA-DOAP06340 OR52N5-202ENST00000641181 2778 ntAPPRIS P1 BASIC6.53□□□□□ -1.36
HLA-DOAP06340 ZNF571-201ENST00000328550 4113 ntAPPRIS P1 TSL 1 (best) BASIC6.53□□□□□ -1.36
HLA-DOAP06340 MMP8-201ENST00000236826 3056 ntAPPRIS P1 TSL 1 (best) BASIC6.53□□□□□ -1.36
HLA-DOAP06340 AL360270.2-201ENST00000562952 5985 ntBASIC6.53□□□□□ -1.36
HLA-DOAP06340 SERPINB11-205ENST00000544088 1846 ntAPPRIS P1 TSL 2 BASIC6.53□□□□□ -1.36
HLA-DOAP06340 RRP15-201ENST00000366932 7771 ntAPPRIS P1 TSL 1 (best) BASIC6.53□□□□□ -1.36
HLA-DOAP06340 PAK3-201ENST00000262836 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC6.52□□□□□ -1.36
HLA-DOAP06340 PAK3-205ENST00000417227 2196 ntTSL 1 (best) BASIC6.52□□□□□ -1.36
Retrieved 100 of 98,524 protein–RNA pairs in 82.7 ms