Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 F9-201ENST00000218099 2780 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
LHX3Q9UBR4 ZNF93-201ENST00000343769 2648 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
LHX3Q9UBR4 NAMPTP1-201ENST00000440465 2514 ntBASIC5.35□□□□□ -1.55
LHX3Q9UBR4 AC007750.1-202ENST00000418968 4098 ntTSL 5 BASIC5.35□□□□□ -1.55
LHX3Q9UBR4 ANO4-202ENST00000392979 3909 ntAPPRIS P3 TSL 2 BASIC5.35□□□□□ -1.55
LHX3Q9UBR4 TM4SF20-201ENST00000304568 2296 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
LHX3Q9UBR4 ZNF181-203ENST00000459757 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC5.35□□□□□ -1.55
LHX3Q9UBR4 SRPK2-201ENST00000357311 3700 ntAPPRIS P3 TSL 1 (best) BASIC5.35□□□□□ -1.55
LHX3Q9UBR4 NPHP1-204ENST00000417665 2246 ntTSL 5 BASIC5.35□□□□□ -1.55
LHX3Q9UBR4 SLC16A9-201ENST00000395347 3646 ntAPPRIS P1 TSL 2 BASIC5.35□□□□□ -1.55
LHX3Q9UBR4 LINC01179-201ENST00000507838 2163 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
LHX3Q9UBR4 SMARCE1-208ENST00000474246 2124 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
LHX3Q9UBR4 VWC2L-201ENST00000312504 4610 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
LHX3Q9UBR4 CCPG1-202ENST00000425574 1945 ntTSL 2 BASIC5.35□□□□□ -1.55
LHX3Q9UBR4 DAZ4-205ENST00000440066 1891 ntTSL 5 BASIC5.34□□□□□ -1.55
LHX3Q9UBR4 DAZ1-206ENST00000620725 1891 ntTSL 5 BASIC5.34□□□□□ -1.55
LHX3Q9UBR4 DSPP-202ENST00000399271 4331 ntAPPRIS P1 TSL 5 BASIC5.34□□□□□ -1.55
LHX3Q9UBR4 XPNPEP3-201ENST00000357137 7988 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
LHX3Q9UBR4 KSR2-201ENST00000339824 17726 ntAPPRIS P1 TSL 5 BASIC5.34□□□□□ -1.55
LHX3Q9UBR4 POC1B-201ENST00000313546 3001 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
LHX3Q9UBR4 OFD1P17-201ENST00000437639 3018 ntBASIC5.34□□□□□ -1.55
LHX3Q9UBR4 G3BP1-202ENST00000394123 10240 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
LHX3Q9UBR4 CEP295-206ENST00000531700 2890 ntAPPRIS ALT2 TSL 2 BASIC5.34□□□□□ -1.55
LHX3Q9UBR4 MAP3K19-204ENST00000392915 5030 ntAPPRIS P3 TSL 5 BASIC5.34□□□□□ -1.55
LHX3Q9UBR4 C3orf67-209ENST00000482387 2617 ntTSL 5 BASIC5.34□□□□□ -1.55
LHX3Q9UBR4 OR4F5-202ENST00000641515 2618 ntAPPRIS P1 BASIC5.34□□□□□ -1.55
LHX3Q9UBR4 ADGRF5-201ENST00000265417 5668 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
LHX3Q9UBR4 FIGN-201ENST00000333129 9536 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
LHX3Q9UBR4 RMST-209ENST00000639542 3269 ntTSL 5 BASIC5.34□□□□□ -1.55
LHX3Q9UBR4 FGL1-209ENST00000522444 1367 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
LHX3Q9UBR4 VPS41-203ENST00000395969 3181 ntTSL 5 BASIC5.34□□□□□ -1.55
LHX3Q9UBR4 OR9G4-201ENST00000302957 984 ntBASIC5.34□□□□□ -1.55
LHX3Q9UBR4 ARGLU1-202ENST00000375926 821 ntAPPRIS P1 TSL 5 BASIC5.34□□□□□ -1.55
LHX3Q9UBR4 MIR223-201ENST00000385204 110 ntBASIC5.34□□□□□ -1.55
LHX3Q9UBR4 RN7SKP273-201ENST00000411392 314 ntBASIC5.34□□□□□ -1.55
LHX3Q9UBR4 AL691447.1-201ENST00000419456 387 ntBASIC5.34□□□□□ -1.55
LHX3Q9UBR4 RPL12P43-201ENST00000420608 499 ntBASIC5.34□□□□□ -1.55
LHX3Q9UBR4 RPL7AP49-201ENST00000429522 581 ntBASIC5.34□□□□□ -1.55
LHX3Q9UBR4 AL591438.1-201ENST00000433508 581 ntBASIC5.34□□□□□ -1.55
LHX3Q9UBR4 AL163193.1-201ENST00000444895 788 ntBASIC5.34□□□□□ -1.55
LHX3Q9UBR4 MTND6P5-201ENST00000448266 512 ntBASIC5.34□□□□□ -1.55
LHX3Q9UBR4 Z92846.1-201ENST00000456203 268 ntBASIC5.34□□□□□ -1.55
LHX3Q9UBR4 AC005532.2-201ENST00000467154 373 ntBASIC5.34□□□□□ -1.55
LHX3Q9UBR4 B4GALT4-AS1-201ENST00000470790 544 ntTSL 5 BASIC5.34□□□□□ -1.55
LHX3Q9UBR4 RPL7P41-201ENST00000485823 957 ntBASIC5.34□□□□□ -1.55
LHX3Q9UBR4 RPSAP51-201ENST00000497462 645 ntBASIC5.34□□□□□ -1.55
LHX3Q9UBR4 AC006499.3-201ENST00000506077 748 ntBASIC5.34□□□□□ -1.55
LHX3Q9UBR4 CCNHP1-201ENST00000513311 678 ntBASIC5.34□□□□□ -1.55
LHX3Q9UBR4 AC116424.1-203ENST00000513940 671 ntTSL 3 BASIC5.34□□□□□ -1.55
LHX3Q9UBR4 AC008676.3-201ENST00000521237 435 ntBASIC5.34□□□□□ -1.55
LHX3Q9UBR4 C15orf41-205ENST00000563167 772 ntTSL 3 BASIC5.34□□□□□ -1.55
LHX3Q9UBR4 PDCD6IPP2-207ENST00000566321 1069 ntBASIC5.34□□□□□ -1.55
LHX3Q9UBR4 OR7E18P-201ENST00000592589 702 ntBASIC5.34□□□□□ -1.55
LHX3Q9UBR4 AC243654.3-201ENST00000617427 735 ntTSL 5 BASIC5.34□□□□□ -1.55
LHX3Q9UBR4 AP2B1-222ENST00000628168 192 ntTSL 5 BASIC5.34□□□□□ -1.55
LHX3Q9UBR4 C4BPAP1-201ENST00000415474 1893 ntBASIC5.34□□□□□ -1.55
LHX3Q9UBR4 AL606516.1-201ENST00000455438 1861 ntTSL 2 BASIC5.34□□□□□ -1.55
LHX3Q9UBR4 TEDDM1-201ENST00000367565 2500 ntAPPRIS P1 BASIC5.34□□□□□ -1.56
LHX3Q9UBR4 IFRD1-217ENST00000621379 3232 ntTSL 2 BASIC5.34□□□□□ -1.56
LHX3Q9UBR4 SELL-201ENST00000236147 2436 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.56
LHX3Q9UBR4 ALB-202ENST00000401494 1659 ntTSL 5 BASIC5.34□□□□□ -1.56
LHX3Q9UBR4 MTO1-212ENST00000498286 10857 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
LHX3Q9UBR4 SAMSN1-206ENST00000619120 2028 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
LHX3Q9UBR4 DYNC1I2-201ENST00000340296 2589 ntAPPRIS P4 TSL 1 (best) BASIC5.33□□□□□ -1.56
LHX3Q9UBR4 ENSA-214ENST00000513281 1369 ntTSL 2 BASIC5.33□□□□□ -1.56
LHX3Q9UBR4 LINC01684-203ENST00000453784 2908 ntTSL 2 BASIC5.33□□□□□ -1.56
LHX3Q9UBR4 SAMMSON-210ENST00000641260 1308 ntBASIC5.33□□□□□ -1.56
LHX3Q9UBR4 CDC5L-201ENST00000371477 6423 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
LHX3Q9UBR4 RNU1-19P-201ENST00000363306 165 ntBASIC5.33□□□□□ -1.56
LHX3Q9UBR4 TEX36-201ENST00000368821 922 ntAPPRIS P3 TSL 1 (best) BASIC5.33□□□□□ -1.56
LHX3Q9UBR4 CASKP1-201ENST00000412870 582 ntBASIC5.33□□□□□ -1.56
LHX3Q9UBR4 CPB2-AS1-201ENST00000415033 747 ntTSL 3 BASIC5.33□□□□□ -1.56
LHX3Q9UBR4 HNRNPA3P4-201ENST00000427514 803 ntBASIC5.33□□□□□ -1.56
LHX3Q9UBR4 MAGI2-AS1-201ENST00000428298 472 ntTSL 3 BASIC5.33□□□□□ -1.56
LHX3Q9UBR4 LINC02257-202ENST00000433576 720 ntTSL 5 BASIC5.33□□□□□ -1.56
LHX3Q9UBR4 AC016772.1-201ENST00000444170 1261 ntBASIC5.33□□□□□ -1.56
LHX3Q9UBR4 AP000797.2-201ENST00000475768 606 ntBASIC5.33□□□□□ -1.56
LHX3Q9UBR4 RPS12P31-201ENST00000491419 398 ntBASIC5.33□□□□□ -1.56
LHX3Q9UBR4 RPS24P16-201ENST00000497294 392 ntBASIC5.33□□□□□ -1.56
LHX3Q9UBR4 TRIM36-IT1-201ENST00000503723 881 ntBASIC5.33□□□□□ -1.56
LHX3Q9UBR4 AC079858.1-201ENST00000507842 448 ntTSL 3 BASIC5.33□□□□□ -1.56
LHX3Q9UBR4 IMPA1P1-201ENST00000510718 842 ntBASIC5.33□□□□□ -1.56
LHX3Q9UBR4 AC021193.1-201ENST00000511607 420 ntBASIC5.33□□□□□ -1.56
LHX3Q9UBR4 AC091435.2-201ENST00000514586 565 ntTSL 4 BASIC5.33□□□□□ -1.56
LHX3Q9UBR4 AC012613.1-201ENST00000522685 387 ntTSL 2 BASIC5.33□□□□□ -1.56
LHX3Q9UBR4 CPSF7-220ENST00000541963 549 ntTSL 4 BASIC5.33□□□□□ -1.56
LHX3Q9UBR4 AC012181.3-201ENST00000565861 601 ntTSL 4 BASIC5.33□□□□□ -1.56
LHX3Q9UBR4 AC011626.1-201ENST00000604710 562 ntBASIC5.33□□□□□ -1.56
LHX3Q9UBR4 RNU6-84P-201ENST00000607737 102 ntBASIC5.33□□□□□ -1.56
LHX3Q9UBR4 ZNF75A-210ENST00000617839 1225 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
LHX3Q9UBR4 SLC8A1-AS1-239ENST00000631142 623 ntTSL 5 BASIC5.33□□□□□ -1.56
LHX3Q9UBR4 CCDC195-201ENST00000638102 606 ntAPPRIS P1 TSL 5 BASIC5.33□□□□□ -1.56
LHX3Q9UBR4 ZNF559-201ENST00000317221 2732 ntTSL 2 BASIC5.33□□□□□ -1.56
LHX3Q9UBR4 PIGK-202ENST00000370812 4596 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
LHX3Q9UBR4 PSMA8-205ENST00000612461 1619 ntTSL 5 BASIC5.33□□□□□ -1.56
LHX3Q9UBR4 CSPP1-201ENST00000262210 4367 ntAPPRIS P3 TSL 1 (best) BASIC5.33□□□□□ -1.56
LHX3Q9UBR4 EEF1A1-210ENST00000610520 3447 ntTSL 5 BASIC5.33□□□□□ -1.56
LHX3Q9UBR4 MDN1-201ENST00000369393 18413 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
LHX3Q9UBR4 PPFIBP1-201ENST00000228425 5933 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
LHX3Q9UBR4 Z95114.1-201ENST00000624264 14574 ntBASIC5.33□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 72.7 ms