Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 AMOT-203ENST00000371959 7319 ntAPPRIS ALT2 TSL 1 (best) BASIC7.58□□□□□ -1.2
TRAIPQ9BWF2 ANKS4B-201ENST00000311620 4352 ntAPPRIS P1 TSL 1 (best) BASIC7.57□□□□□ -1.2
TRAIPQ9BWF2 GPRIN3-202ENST00000609438 14244 ntAPPRIS P1 TSL 2 BASIC7.57□□□□□ -1.2
TRAIPQ9BWF2 RAD23B-202ENST00000416373 3835 ntTSL 1 (best) BASIC7.57□□□□□ -1.2
TRAIPQ9BWF2 CDC7-203ENST00000428239 3313 ntAPPRIS P1 TSL 1 (best) BASIC7.57□□□□□ -1.2
TRAIPQ9BWF2 AC119674.1-204ENST00000641348 1343 ntBASIC7.57□□□□□ -1.2
TRAIPQ9BWF2 CALB1-208ENST00000518457 1490 ntTSL 2 BASIC7.57□□□□□ -1.2
TRAIPQ9BWF2 PIGN-238ENST00000639758 4239 ntTSL 5 BASIC7.57□□□□□ -1.2
TRAIPQ9BWF2 SNTN-203ENST00000496807 3746 ntTSL 4 BASIC7.57□□□□□ -1.2
TRAIPQ9BWF2 AC005839.1-201ENST00000624148 3213 ntBASIC7.57□□□□□ -1.2
TRAIPQ9BWF2 NR1H4-206ENST00000548884 2884 ntAPPRIS P3 TSL 1 (best) BASIC7.57□□□□□ -1.2
TRAIPQ9BWF2 NOP10-201ENST00000328848 554 ntAPPRIS P1 TSL 1 (best) BASIC7.57□□□□□ -1.2
TRAIPQ9BWF2 RNU1-5P-201ENST00000362684 144 ntBASIC7.57□□□□□ -1.2
TRAIPQ9BWF2 FETUB-203ENST00000382136 1040 ntTSL 1 (best) BASIC7.57□□□□□ -1.2
TRAIPQ9BWF2 RNU6-920P-201ENST00000410926 92 ntBASIC7.57□□□□□ -1.2
TRAIPQ9BWF2 DPPA2P2-201ENST00000418220 897 ntBASIC7.57□□□□□ -1.2
TRAIPQ9BWF2 AP000695.2-201ENST00000428667 715 ntTSL 5 BASIC7.57□□□□□ -1.2
TRAIPQ9BWF2 MED14P1-201ENST00000430517 648 ntBASIC7.57□□□□□ -1.2
TRAIPQ9BWF2 RPS10P18-201ENST00000442662 495 ntBASIC7.57□□□□□ -1.2
TRAIPQ9BWF2 AC034228.3-201ENST00000446275 562 ntTSL 3 BASIC7.57□□□□□ -1.2
TRAIPQ9BWF2 AL158835.1-204ENST00000449693 371 ntTSL 3 BASIC7.57□□□□□ -1.2
TRAIPQ9BWF2 HMGN3P1-201ENST00000453847 193 ntBASIC7.57□□□□□ -1.2
TRAIPQ9BWF2 RN7SKP198-201ENST00000459286 306 ntBASIC7.57□□□□□ -1.2
TRAIPQ9BWF2 RN7SL390P-201ENST00000470634 284 ntBASIC7.57□□□□□ -1.2
TRAIPQ9BWF2 PHC3-208ENST00000481639 1075 ntTSL 1 (best) BASIC7.57□□□□□ -1.2
TRAIPQ9BWF2 RPS7P6-201ENST00000485777 579 ntBASIC7.57□□□□□ -1.2
TRAIPQ9BWF2 EEF1A1P25-201ENST00000495704 1267 ntBASIC7.57□□□□□ -1.2
TRAIPQ9BWF2 AC011411.1-201ENST00000509592 876 ntBASIC7.57□□□□□ -1.2
TRAIPQ9BWF2 MYLK-AS2-202ENST00000515464 754 ntTSL 2 BASIC7.57□□□□□ -1.2
TRAIPQ9BWF2 RNU6-347P-201ENST00000516658 105 ntBASIC7.57□□□□□ -1.2
TRAIPQ9BWF2 AC090739.1-201ENST00000522190 708 ntTSL 3 BASIC7.57□□□□□ -1.2
TRAIPQ9BWF2 AC103843.1-201ENST00000527318 682 ntTSL 4 BASIC7.57□□□□□ -1.2
TRAIPQ9BWF2 TEX12-202ENST00000530752 787 ntAPPRIS P1 TSL 1 (best) BASIC7.57□□□□□ -1.2
TRAIPQ9BWF2 ASCL3-201ENST00000531618 633 ntAPPRIS P1 BASIC7.57□□□□□ -1.2
TRAIPQ9BWF2 AC027026.1-201ENST00000532323 742 ntBASIC7.57□□□□□ -1.2
TRAIPQ9BWF2 AC006065.4-204ENST00000537478 654 ntTSL 2 BASIC7.57□□□□□ -1.2
TRAIPQ9BWF2 AC007537.1-201ENST00000539347 327 ntBASIC7.57□□□□□ -1.2
TRAIPQ9BWF2 AC006065.4-203ENST00000541065 526 ntTSL 2 BASIC7.57□□□□□ -1.2
TRAIPQ9BWF2 AC015660.3-201ENST00000559569 198 ntTSL 3 BASIC7.57□□□□□ -1.2
TRAIPQ9BWF2 AC021483.1-201ENST00000560760 539 ntTSL 3 BASIC7.57□□□□□ -1.2
TRAIPQ9BWF2 AL512347.1-201ENST00000566420 503 ntBASIC7.57□□□□□ -1.2
TRAIPQ9BWF2 AC138811.2-201ENST00000567078 764 ntAPPRIS P1 TSL 3 BASIC7.57□□□□□ -1.2
TRAIPQ9BWF2 LINC01855-201ENST00000585520 396 ntTSL 3 BASIC7.57□□□□□ -1.2
TRAIPQ9BWF2 LINC02028-206ENST00000593326 810 ntTSL 5 BASIC7.57□□□□□ -1.2
TRAIPQ9BWF2 ZRANB2-AS2-215ENST00000596952 624 ntTSL 5 BASIC7.57□□□□□ -1.2
TRAIPQ9BWF2 AP001267.4-201ENST00000602598 545 ntBASIC7.57□□□□□ -1.2
TRAIPQ9BWF2 AC068790.2-201ENST00000602601 557 ntBASIC7.57□□□□□ -1.2
TRAIPQ9BWF2 XIST-210ENST00000602863 775 ntTSL 3 BASIC7.57□□□□□ -1.2
TRAIPQ9BWF2 AC099566.1-205ENST00000609411 657 ntTSL 5 BASIC7.57□□□□□ -1.2
TRAIPQ9BWF2 AP005212.3-201ENST00000619964 528 ntBASIC7.57□□□□□ -1.2
TRAIPQ9BWF2 AC026634.1-201ENST00000634369 198 ntBASIC7.57□□□□□ -1.2
TRAIPQ9BWF2 AL596275.2-203ENST00000641951 371 ntBASIC7.57□□□□□ -1.2
TRAIPQ9BWF2 AP003175.1-201ENST00000641383 6658 ntBASIC7.57□□□□□ -1.2
TRAIPQ9BWF2 LRRC31-202ENST00000316428 2520 ntAPPRIS P3 TSL 1 (best) BASIC7.57□□□□□ -1.2
TRAIPQ9BWF2 OAS2-202ENST00000392583 4734 ntAPPRIS ALT2 TSL 1 (best) BASIC7.57□□□□□ -1.2
TRAIPQ9BWF2 TRPC4-205ENST00000379679 2475 ntTSL 1 (best) BASIC7.57□□□□□ -1.2
TRAIPQ9BWF2 LINC01559-201ENST00000318426 2750 ntTSL 2 BASIC7.57□□□□□ -1.2
TRAIPQ9BWF2 FLRT3-201ENST00000341420 3971 ntAPPRIS P1 TSL 2 BASIC7.57□□□□□ -1.2
TRAIPQ9BWF2 PGK2-201ENST00000304801 1657 ntAPPRIS P1 BASIC7.57□□□□□ -1.2
TRAIPQ9BWF2 AC007012.2-201ENST00000623206 1676 ntBASIC7.57□□□□□ -1.2
TRAIPQ9BWF2 PAIP1-202ENST00000338972 1814 ntAPPRIS P3 TSL 5 BASIC7.57□□□□□ -1.2
TRAIPQ9BWF2 OGT-201ENST00000373701 3310 ntAPPRIS ALT1 TSL 1 (best) BASIC7.57□□□□□ -1.2
TRAIPQ9BWF2 BORCS7-ASMT-201ENST00000299353 2670 ntAPPRIS P1 TSL 5 BASIC7.56□□□□□ -1.2
TRAIPQ9BWF2 AL031320.2-201ENST00000591892 2079 ntTSL 5 BASIC7.56□□□□□ -1.2
TRAIPQ9BWF2 MEF2C-244ENST00000636998 5936 ntTSL 5 BASIC7.56□□□□□ -1.2
TRAIPQ9BWF2 HMGCS2-204ENST00000544913 1925 ntTSL 2 BASIC7.56□□□□□ -1.2
TRAIPQ9BWF2 CDY7P-201ENST00000429883 1604 ntBASIC7.56□□□□□ -1.2
TRAIPQ9BWF2 TMEM217-202ENST00000356757 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC7.56□□□□□ -1.2
TRAIPQ9BWF2 SRBD1-201ENST00000263736 3681 ntAPPRIS P1 TSL 2 BASIC7.56□□□□□ -1.2
TRAIPQ9BWF2 RBPJP6-201ENST00000411556 1431 ntBASIC7.56□□□□□ -1.2
TRAIPQ9BWF2 AP3M1-201ENST00000355264 5124 ntAPPRIS P1 TSL 1 (best) BASIC7.56□□□□□ -1.2
TRAIPQ9BWF2 PSMA6-201ENST00000261479 1029 ntAPPRIS P2 TSL 1 (best) BASIC7.56□□□□□ -1.2
TRAIPQ9BWF2 AC096571.1-201ENST00000325407 306 ntTSL 1 (best) BASIC7.56□□□□□ -1.2
TRAIPQ9BWF2 Y_RNA.51-201ENST00000362725 102 ntBASIC7.56□□□□□ -1.2
TRAIPQ9BWF2 RNA5SP172-201ENST00000365061 118 ntBASIC7.56□□□□□ -1.2
TRAIPQ9BWF2 SNAPC3-201ENST00000380799 753 ntTSL 3 BASIC7.56□□□□□ -1.2
TRAIPQ9BWF2 Y_RNA.408-201ENST00000383987 102 ntBASIC7.56□□□□□ -1.2
TRAIPQ9BWF2 TRBV6-7-201ENST00000390373 344 ntAPPRIS P1 BASIC7.56□□□□□ -1.2
TRAIPQ9BWF2 AL121978.1-201ENST00000402778 359 ntBASIC7.56□□□□□ -1.2
TRAIPQ9BWF2 RNU2-50P-201ENST00000410494 143 ntBASIC7.56□□□□□ -1.2
TRAIPQ9BWF2 AL136133.1-201ENST00000413694 376 ntBASIC7.56□□□□□ -1.2
TRAIPQ9BWF2 AL773545.3-201ENST00000414297 706 ntBASIC7.56□□□□□ -1.2
TRAIPQ9BWF2 LINC00362-201ENST00000414345 264 ntTSL 2 BASIC7.56□□□□□ -1.2
TRAIPQ9BWF2 AL158166.2-201ENST00000420845 748 ntTSL 2 BASIC7.56□□□□□ -1.2
TRAIPQ9BWF2 AL590666.1-201ENST00000428641 433 ntTSL 2 BASIC7.56□□□□□ -1.2
TRAIPQ9BWF2 RPL37P1-201ENST00000432310 284 ntBASIC7.56□□□□□ -1.2
TRAIPQ9BWF2 AC241584.1-201ENST00000438469 1241 ntBASIC7.56□□□□□ -1.2
TRAIPQ9BWF2 AC005487.1-201ENST00000440208 665 ntTSL 5 BASIC7.56□□□□□ -1.2
TRAIPQ9BWF2 DCN-205ENST00000441303 519 ntTSL 1 (best) BASIC7.56□□□□□ -1.2
TRAIPQ9BWF2 MORF4-201ENST00000447135 971 ntBASIC7.56□□□□□ -1.2
TRAIPQ9BWF2 AL121578.2-201ENST00000448797 447 ntBASIC7.56□□□□□ -1.2
TRAIPQ9BWF2 AL591363.1-201ENST00000450091 483 ntBASIC7.56□□□□□ -1.2
TRAIPQ9BWF2 CSN1S2AP-201ENST00000451783 779 ntTSL 1 (best) BASIC7.56□□□□□ -1.2
TRAIPQ9BWF2 OR52E3P-201ENST00000452083 936 ntBASIC7.56□□□□□ -1.2
TRAIPQ9BWF2 RPS3AP49-201ENST00000472161 790 ntBASIC7.56□□□□□ -1.2
TRAIPQ9BWF2 RPS6P4-201ENST00000494693 758 ntBASIC7.56□□□□□ -1.2
TRAIPQ9BWF2 PABPC1P1-201ENST00000506347 591 ntBASIC7.56□□□□□ -1.2
TRAIPQ9BWF2 B3GNTL1P1-201ENST00000509174 289 ntBASIC7.56□□□□□ -1.2
TRAIPQ9BWF2 AC092674.1-201ENST00000513871 571 ntTSL 4 BASIC7.56□□□□□ -1.2
TRAIPQ9BWF2 SMIM20-202ENST00000514384 774 ntTSL 5 BASIC7.56□□□□□ -1.2
Retrieved 100 of 98,524 protein–RNA pairs in 97.4 ms