Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 AC087516.1-201ENST00000561236 2428 ntBASIC5.62□□□□□ -1.51
HDDC3Q8N4P3 AGO3-203ENST00000373191 19687 ntAPPRIS P1 TSL 2 BASIC5.62□□□□□ -1.51
HDDC3Q8N4P3 FYB1-204ENST00000505428 2789 ntAPPRIS ALT2 TSL 1 (best) BASIC5.61□□□□□ -1.51
HDDC3Q8N4P3 ZNF300P1-202ENST00000520773 3115 ntTSL 5 BASIC5.61□□□□□ -1.51
HDDC3Q8N4P3 FASTKD2-201ENST00000236980 3188 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
HDDC3Q8N4P3 MAP2-205ENST00000392194 5303 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
HDDC3Q8N4P3 CNTN1-202ENST00000348761 3328 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
HDDC3Q8N4P3 OR9A2-201ENST00000350513 1038 ntAPPRIS P1 BASIC5.61□□□□□ -1.51
HDDC3Q8N4P3 RNU1-146P-201ENST00000364015 165 ntBASIC5.61□□□□□ -1.51
HDDC3Q8N4P3 MIR765-201ENST00000390226 114 ntBASIC5.61□□□□□ -1.51
HDDC3Q8N4P3 RNU1-77P-201ENST00000390868 162 ntBASIC5.61□□□□□ -1.51
HDDC3Q8N4P3 F9-202ENST00000394090 1272 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
HDDC3Q8N4P3 G3BP1-202ENST00000394123 10240 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
HDDC3Q8N4P3 AL589647.1-201ENST00000402485 466 ntBASIC5.61□□□□□ -1.51
HDDC3Q8N4P3 AC002524.1-201ENST00000411687 547 ntBASIC5.61□□□□□ -1.51
HDDC3Q8N4P3 PCA3-201ENST00000412654 3922 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
HDDC3Q8N4P3 LINC00317-201ENST00000419069 612 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
HDDC3Q8N4P3 AL590762.4-201ENST00000425885 253 ntBASIC5.61□□□□□ -1.51
HDDC3Q8N4P3 AC092168.2-201ENST00000430586 717 ntTSL 3 BASIC5.61□□□□□ -1.51
HDDC3Q8N4P3 AL158835.2-201ENST00000430970 300 ntTSL 2 BASIC5.61□□□□□ -1.51
HDDC3Q8N4P3 VN1R54P-201ENST00000435210 1049 ntBASIC5.61□□□□□ -1.51
HDDC3Q8N4P3 OR6D1P-201ENST00000436165 939 ntBASIC5.61□□□□□ -1.51
HDDC3Q8N4P3 AP000472.1-201ENST00000452500 530 ntTSL 2 BASIC5.61□□□□□ -1.51
HDDC3Q8N4P3 AC073130.1-202ENST00000454897 587 ntTSL 2 BASIC5.61□□□□□ -1.51
HDDC3Q8N4P3 AC073636.1-202ENST00000457756 558 ntTSL 4 BASIC5.61□□□□□ -1.51
HDDC3Q8N4P3 TMEM161B-AS1-208ENST00000507736 630 ntTSL 3 BASIC5.61□□□□□ -1.51
HDDC3Q8N4P3 AC093815.1-201ENST00000508637 280 ntBASIC5.61□□□□□ -1.51
HDDC3Q8N4P3 NAT1-208ENST00000520546 1446 ntAPPRIS P1 BASIC5.61□□□□□ -1.51
HDDC3Q8N4P3 AC013644.1-202ENST00000523166 499 ntTSL 2 BASIC5.61□□□□□ -1.51
HDDC3Q8N4P3 AC103855.1-201ENST00000525926 564 ntTSL 2 BASIC5.61□□□□□ -1.51
HDDC3Q8N4P3 KCTD21-AS1-206ENST00000532831 856 ntTSL 2 BASIC5.61□□□□□ -1.51
HDDC3Q8N4P3 PPFIA2-AS1-202ENST00000549161 1080 ntTSL 3 BASIC5.61□□□□□ -1.51
HDDC3Q8N4P3 MIR4646-201ENST00000580775 63 ntBASIC5.61□□□□□ -1.51
HDDC3Q8N4P3 AC104996.1-201ENST00000583250 591 ntTSL 5 BASIC5.61□□□□□ -1.51
HDDC3Q8N4P3 LINC00663-202ENST00000586816 306 ntTSL 2 BASIC5.61□□□□□ -1.51
HDDC3Q8N4P3 CDC42EP3P1-201ENST00000601004 764 ntBASIC5.61□□□□□ -1.51
HDDC3Q8N4P3 NANOGP3-201ENST00000605855 286 ntBASIC5.61□□□□□ -1.51
HDDC3Q8N4P3 AC009163.6-201ENST00000612367 342 ntBASIC5.61□□□□□ -1.51
HDDC3Q8N4P3 AC025574.2-201ENST00000615621 514 ntBASIC5.61□□□□□ -1.51
HDDC3Q8N4P3 AL118522.2-201ENST00000616045 615 ntBASIC5.61□□□□□ -1.51
HDDC3Q8N4P3 OR52B4-201ENST00000624801 1124 ntAPPRIS P1 BASIC5.61□□□□□ -1.51
HDDC3Q8N4P3 SLC12A1-205ENST00000558405 3426 ntAPPRIS P3 TSL 1 (best) BASIC5.61□□□□□ -1.51
HDDC3Q8N4P3 GRID2-204ENST00000510992 2739 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
HDDC3Q8N4P3 ECHDC1-222ENST00000531967 2585 ntAPPRIS ALT2 TSL 2 BASIC5.61□□□□□ -1.51
HDDC3Q8N4P3 AC107021.2-201ENST00000567714 2095 ntBASIC5.6□□□□□ -1.51
HDDC3Q8N4P3 NRCAM-210ENST00000425651 3915 ntAPPRIS ALT2 TSL 1 (best) BASIC5.6□□□□□ -1.51
HDDC3Q8N4P3 NOL4-202ENST00000535384 1853 ntTSL 2 BASIC5.6□□□□□ -1.51
HDDC3Q8N4P3 DSC2-202ENST00000280904 12325 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
HDDC3Q8N4P3 AMY1C-201ENST00000370079 1632 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
HDDC3Q8N4P3 FLRT3-202ENST00000378053 4776 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
HDDC3Q8N4P3 OSBPL9P1-201ENST00000604744 1469 ntBASIC5.6□□□□□ -1.51
HDDC3Q8N4P3 CLVS1-203ENST00000518592 2880 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
HDDC3Q8N4P3 DLGAP1-AS2-202ENST00000573177 1388 ntBASIC5.6□□□□□ -1.51
HDDC3Q8N4P3 CASP5-208ENST00000526056 1344 ntTSL 5 BASIC5.6□□□□□ -1.51
HDDC3Q8N4P3 AC092958.1-201ENST00000467198 2569 ntTSL 2 BASIC5.6□□□□□ -1.51
HDDC3Q8N4P3 NPM1-202ENST00000351986 1237 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
HDDC3Q8N4P3 AL009179.1-201ENST00000406085 265 ntBASIC5.6□□□□□ -1.51
HDDC3Q8N4P3 AC025946.1-201ENST00000413286 430 ntTSL 3 BASIC5.6□□□□□ -1.51
HDDC3Q8N4P3 AL160163.1-201ENST00000417465 403 ntTSL 3 BASIC5.6□□□□□ -1.51
HDDC3Q8N4P3 AL133325.1-201ENST00000421090 382 ntBASIC5.6□□□□□ -1.51
HDDC3Q8N4P3 SLC8A1-AS1-205ENST00000435515 497 ntTSL 3 BASIC5.6□□□□□ -1.51
HDDC3Q8N4P3 AP000146.1-203ENST00000444178 309 ntTSL 3 BASIC5.6□□□□□ -1.51
HDDC3Q8N4P3 RPS23P9-201ENST00000448848 438 ntBASIC5.6□□□□□ -1.51
HDDC3Q8N4P3 TPPP2-202ENST00000460647 568 ntTSL 3 BASIC5.6□□□□□ -1.51
HDDC3Q8N4P3 RPS18P6-201ENST00000476880 458 ntBASIC5.6□□□□□ -1.51
HDDC3Q8N4P3 LINC01340-201ENST00000504012 724 ntTSL 3 BASIC5.6□□□□□ -1.51
HDDC3Q8N4P3 LINC02039-201ENST00000507428 566 ntTSL 4 BASIC5.6□□□□□ -1.51
HDDC3Q8N4P3 RNA5SP228-201ENST00000516232 133 ntBASIC5.6□□□□□ -1.51
HDDC3Q8N4P3 MS4A6A-210ENST00000529054 1160 ntTSL 5 BASIC5.6□□□□□ -1.51
HDDC3Q8N4P3 AP000676.2-201ENST00000529711 301 ntBASIC5.6□□□□□ -1.51
HDDC3Q8N4P3 AP000722.1-201ENST00000531176 775 ntTSL 3 BASIC5.6□□□□□ -1.51
HDDC3Q8N4P3 OR5D15P-201ENST00000531671 942 ntBASIC5.6□□□□□ -1.51
HDDC3Q8N4P3 AC139697.1-201ENST00000548429 745 ntBASIC5.6□□□□□ -1.51
HDDC3Q8N4P3 AC034102.2-201ENST00000548861 489 ntAPPRIS P1 TSL 5 BASIC5.6□□□□□ -1.51
HDDC3Q8N4P3 AC025580.2-202ENST00000558536 715 ntTSL 3 BASIC5.6□□□□□ -1.51
HDDC3Q8N4P3 AC020661.4-201ENST00000561388 500 ntTSL 3 BASIC5.6□□□□□ -1.51
HDDC3Q8N4P3 AC144836.1-201ENST00000575911 340 ntTSL 2 BASIC5.6□□□□□ -1.51
HDDC3Q8N4P3 MTND2P13-201ENST00000577438 1039 ntBASIC5.6□□□□□ -1.51
HDDC3Q8N4P3 DHFRP1-201ENST00000579682 559 ntBASIC5.6□□□□□ -1.51
HDDC3Q8N4P3 AC015845.1-202ENST00000580184 242 ntTSL 3 BASIC5.6□□□□□ -1.51
HDDC3Q8N4P3 AC004448.4-204ENST00000585389 743 ntTSL 5 BASIC5.6□□□□□ -1.51
HDDC3Q8N4P3 AP001267.4-201ENST00000602598 545 ntBASIC5.6□□□□□ -1.51
HDDC3Q8N4P3 AC087763.1-201ENST00000603391 286 ntBASIC5.6□□□□□ -1.51
HDDC3Q8N4P3 HIRAP1-201ENST00000605318 787 ntBASIC5.6□□□□□ -1.51
HDDC3Q8N4P3 Z98949.1-220ENST00000609809 804 ntTSL 5 BASIC5.6□□□□□ -1.51
HDDC3Q8N4P3 ZNF75A-210ENST00000617839 1225 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
HDDC3Q8N4P3 AP001784.1-201ENST00000624107 428 ntBASIC5.6□□□□□ -1.51
HDDC3Q8N4P3 AC068631.1-223ENST00000625877 472 ntTSL 5 BASIC5.6□□□□□ -1.51
HDDC3Q8N4P3 ZNF431-201ENST00000311048 13894 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
HDDC3Q8N4P3 DCDC1-203ENST00000406071 4758 ntAPPRIS P2 TSL 5 BASIC5.6□□□□□ -1.51
HDDC3Q8N4P3 ZNF285-204ENST00000591679 2388 ntAPPRIS ALT2 TSL 4 BASIC5.6□□□□□ -1.51
HDDC3Q8N4P3 ZNF571-201ENST00000328550 4113 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
HDDC3Q8N4P3 AC083837.1-201ENST00000565297 2994 ntBASIC5.6□□□□□ -1.51
HDDC3Q8N4P3 CHRM2-203ENST00000445907 5918 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
HDDC3Q8N4P3 LRRC49-201ENST00000260382 2784 ntAPPRIS P3 TSL 1 (best) BASIC5.6□□□□□ -1.51
HDDC3Q8N4P3 LINC01020-202ENST00000508201 1800 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
HDDC3Q8N4P3 KIAA0391-209ENST00000604948 1706 ntAPPRIS ALT2 TSL 2 BASIC5.6□□□□□ -1.51
HDDC3Q8N4P3 WASHC4-202ENST00000332180 5812 ntAPPRIS P3 TSL 1 (best) BASIC5.59□□□□□ -1.51
HDDC3Q8N4P3 ST8SIA4-201ENST00000231461 6303 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
HDDC3Q8N4P3 CD96-203ENST00000438817 1565 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 103.2 ms