Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 AC244517.7-201ENST00000625144 398 ntTSL 3 BASIC6.98□□□□□ -1.29
LIG3P49916 PCBP1-AS1-359ENST00000630283 1063 ntTSL 5 BASIC6.98□□□□□ -1.29
LIG3P49916 AC011471.4-201ENST00000638271 216 ntBASIC6.98□□□□□ -1.29
LIG3P49916 AC025809.2-201ENST00000625085 1802 ntBASIC6.98□□□□□ -1.29
LIG3P49916 AC004784.1-201ENST00000635495 1833 ntTSL 5 BASIC6.98□□□□□ -1.29
LIG3P49916 AC010329.1-201ENST00000593903 8328 ntBASIC6.98□□□□□ -1.29
LIG3P49916 GRIK2-203ENST00000369134 4185 ntTSL 5 BASIC6.98□□□□□ -1.29
LIG3P49916 CD84-208ENST00000534968 7885 ntTSL 1 (best) BASIC6.98□□□□□ -1.29
LIG3P49916 OR1E1-201ENST00000322608 1307 ntAPPRIS P1 BASIC6.98□□□□□ -1.29
LIG3P49916 LINC01205-201ENST00000489670 1331 ntTSL 1 (best) BASIC6.98□□□□□ -1.29
LIG3P49916 AP000432.2-201ENST00000624164 2048 ntBASIC6.98□□□□□ -1.29
LIG3P49916 PAK3-201ENST00000262836 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC6.98□□□□□ -1.29
LIG3P49916 NBPF19-205ENST00000612881 3715 ntTSL 5 BASIC6.98□□□□□ -1.29
LIG3P49916 ZMYM2-210ENST00000610343 10200 ntAPPRIS P1 TSL 1 (best) BASIC6.98□□□□□ -1.29
LIG3P49916 RNASE13-201ENST00000382951 1607 ntAPPRIS P1 TSL 1 (best) BASIC6.98□□□□□ -1.29
LIG3P49916 AL137100.1-201ENST00000556703 1620 ntBASIC6.98□□□□□ -1.29
LIG3P49916 CHD2-202ENST00000420239 2221 ntTSL 1 (best) BASIC6.97□□□□□ -1.29
LIG3P49916 FCHSD2-208ENST00000458644 2215 ntTSL 2 BASIC6.97□□□□□ -1.29
LIG3P49916 AC005480.1-202ENST00000555916 3548 ntTSL 1 (best) BASIC6.97□□□□□ -1.29
LIG3P49916 AC016747.4-201ENST00000462959 1383 ntTSL 2 BASIC6.97□□□□□ -1.29
LIG3P49916 AC102941.1-201ENST00000567616 1537 ntBASIC6.97□□□□□ -1.29
LIG3P49916 CD200R1-201ENST00000295863 1692 ntTSL 2 BASIC6.97□□□□□ -1.29
LIG3P49916 NSD1-201ENST00000347982 7688 ntTSL 1 (best) BASIC6.97□□□□□ -1.29
LIG3P49916 ADAMTS9-AS2-203ENST00000481312 1970 ntTSL 1 (best) BASIC6.97□□□□□ -1.29
LIG3P49916 FASTKD2-201ENST00000236980 3188 ntAPPRIS P1 TSL 1 (best) BASIC6.97□□□□□ -1.29
LIG3P49916 OR52D1-201ENST00000322641 1065 ntAPPRIS P1 BASIC6.97□□□□□ -1.29
LIG3P49916 CLEC4A-202ENST00000345999 841 ntTSL 5 BASIC6.97□□□□□ -1.29
LIG3P49916 GCSAML-201ENST00000366488 3820 ntAPPRIS P3 TSL 1 (best) BASIC6.97□□□□□ -1.29
LIG3P49916 DEFB121-202ENST00000376314 389 ntAPPRIS P1 TSL 1 (best) BASIC6.97□□□□□ -1.29
LIG3P49916 TMEM155-203ENST00000394396 2032 ntAPPRIS P2 TSL 2 BASIC6.97□□□□□ -1.29
LIG3P49916 SLC9B1P2-201ENST00000398120 1184 ntBASIC6.97□□□□□ -1.29
LIG3P49916 GLS-204ENST00000409428 816 ntTSL 2 BASIC6.97□□□□□ -1.29
LIG3P49916 C1D-204ENST00000410067 736 ntAPPRIS P1 TSL 1 (best) BASIC6.97□□□□□ -1.29
LIG3P49916 RNU2-16P-201ENST00000410712 136 ntBASIC6.97□□□□□ -1.29
LIG3P49916 LINC00354-201ENST00000412119 347 ntTSL 5 BASIC6.97□□□□□ -1.29
LIG3P49916 NRBF2P2-201ENST00000413087 861 ntBASIC6.97□□□□□ -1.29
LIG3P49916 AL133325.1-201ENST00000421090 382 ntBASIC6.97□□□□□ -1.29
LIG3P49916 MTCO2P34-201ENST00000421994 607 ntBASIC6.97□□□□□ -1.29
LIG3P49916 AC245884.2-201ENST00000426257 404 ntBASIC6.97□□□□□ -1.29
LIG3P49916 LINC01375-201ENST00000428485 1860 ntTSL 2 BASIC6.97□□□□□ -1.29
LIG3P49916 MIR181A2HG-201ENST00000429139 662 ntTSL 2 BASIC6.97□□□□□ -1.29
LIG3P49916 ING3-204ENST00000431467 1447 ntTSL 2 BASIC6.97□□□□□ -1.29
LIG3P49916 MYL6P3-201ENST00000436904 432 ntBASIC6.97□□□□□ -1.29
LIG3P49916 AL359378.1-201ENST00000439891 400 ntTSL 5 BASIC6.97□□□□□ -1.29
LIG3P49916 MTCO1P19-201ENST00000443487 500 ntBASIC6.97□□□□□ -1.29
LIG3P49916 CATSPER2P1-205ENST00000446479 419 ntTSL 1 (best) BASIC6.97□□□□□ -1.29
LIG3P49916 LIX1L-AS1-207ENST00000448561 347 ntTSL 3 BASIC6.97□□□□□ -1.29
LIG3P49916 TNS3-209ENST00000458317 1156 ntTSL 5 BASIC6.97□□□□□ -1.29
LIG3P49916 RNU6-956P-201ENST00000458868 103 ntBASIC6.97□□□□□ -1.29
LIG3P49916 TFP1-201ENST00000460564 572 ntTSL 4 BASIC6.97□□□□□ -1.29
LIG3P49916 AC135721.2-201ENST00000464237 300 ntBASIC6.97□□□□□ -1.29
LIG3P49916 PPP1R2P6-201ENST00000478565 588 ntBASIC6.97□□□□□ -1.29
LIG3P49916 TFP1-203ENST00000490470 561 ntTSL 4 BASIC6.97□□□□□ -1.29
LIG3P49916 KLHL6-AS1-201ENST00000491676 503 ntTSL 2 BASIC6.97□□□□□ -1.29
LIG3P49916 AC112198.1-201ENST00000505369 1220 ntBASIC6.97□□□□□ -1.29
LIG3P49916 AC131392.1-201ENST00000506490 633 ntBASIC6.97□□□□□ -1.29
LIG3P49916 AC138866.2-201ENST00000508650 584 ntBASIC6.97□□□□□ -1.29
LIG3P49916 GUSBP9-201ENST00000510138 584 ntBASIC6.97□□□□□ -1.29
LIG3P49916 RNU6-1004P-201ENST00000516584 111 ntBASIC6.97□□□□□ -1.29
LIG3P49916 NSMCE2-202ENST00000517315 996 ntTSL 3 BASIC6.97□□□□□ -1.29
LIG3P49916 GRPEL2-AS1-201ENST00000521295 401 ntTSL 3 BASIC6.97□□□□□ -1.29
LIG3P49916 NARSP2-202ENST00000522022 349 ntTSL 3 BASIC6.97□□□□□ -1.29
LIG3P49916 AC245519.1-201ENST00000522799 512 ntTSL 4 BASIC6.97□□□□□ -1.29
LIG3P49916 OPRM1-223ENST00000524163 1251 ntAPPRIS ALT1 TSL 1 (best) BASIC6.97□□□□□ -1.29
LIG3P49916 AP002833.2-201ENST00000531585 462 ntTSL 3 BASIC6.97□□□□□ -1.29
LIG3P49916 AP003031.2-202ENST00000533590 572 ntTSL 4 BASIC6.97□□□□□ -1.29
LIG3P49916 AC011603.2-202ENST00000552893 504 ntTSL 3 BASIC6.97□□□□□ -1.29
LIG3P49916 LINC02308-201ENST00000555001 637 ntTSL 2 BASIC6.97□□□□□ -1.29
LIG3P49916 OR11H2-201ENST00000556246 948 ntAPPRIS P1 BASIC6.97□□□□□ -1.29
LIG3P49916 AC012435.1-202ENST00000568772 240 ntBASIC6.97□□□□□ -1.29
LIG3P49916 AL121834.1-201ENST00000572284 509 ntBASIC6.97□□□□□ -1.29
LIG3P49916 WISP1-OT1-201ENST00000602893 642 ntBASIC6.97□□□□□ -1.29
LIG3P49916 AL136363.2-201ENST00000604173 851 ntBASIC6.97□□□□□ -1.29
LIG3P49916 AL592221.1-201ENST00000605266 382 ntBASIC6.97□□□□□ -1.29
LIG3P49916 AC069545.1-201ENST00000605671 358 ntBASIC6.97□□□□□ -1.29
LIG3P49916 AP005212.3-201ENST00000619964 528 ntBASIC6.97□□□□□ -1.29
LIG3P49916 AF001550.2-201ENST00000636643 217 ntBASIC6.97□□□□□ -1.29
LIG3P49916 GVINP1-201ENST00000526769 8438 ntTSL 1 (best) BASIC6.97□□□□□ -1.29
LIG3P49916 IARS-206ENST00000447699 4186 ntTSL 1 (best) BASIC6.97□□□□□ -1.29
LIG3P49916 CUL4B-204ENST00000404115 3264 ntTSL 1 (best) BASIC6.97□□□□□ -1.29
LIG3P49916 AC009220.2-201ENST00000489759 1751 ntBASIC6.97□□□□□ -1.29
LIG3P49916 ANTXR2-204ENST00000404191 1469 ntTSL 1 (best) BASIC6.97□□□□□ -1.29
LIG3P49916 SAMMSON-210ENST00000641260 1308 ntBASIC6.97□□□□□ -1.29
LIG3P49916 NSRP1P1-201ENST00000444067 1693 ntBASIC6.96□□□□□ -1.29
LIG3P49916 NRCAM-210ENST00000425651 3915 ntAPPRIS ALT2 TSL 1 (best) BASIC6.96□□□□□ -1.29
LIG3P49916 GTPBP8-205ENST00000473129 1518 ntTSL 2 BASIC6.96□□□□□ -1.29
LIG3P49916 DAOA-211ENST00000618629 1368 ntAPPRIS P3 TSL 5 BASIC6.96□□□□□ -1.29
LIG3P49916 SLC26A7-202ENST00000309536 2656 ntTSL 1 (best) BASIC6.96□□□□□ -1.29
LIG3P49916 PTPRB-210ENST00000551525 5291 ntTSL 1 (best) BASIC6.96□□□□□ -1.29
LIG3P49916 IFRD1-216ENST00000535603 3397 ntTSL 2 BASIC6.96□□□□□ -1.29
LIG3P49916 SNTN-203ENST00000496807 3746 ntTSL 4 BASIC6.96□□□□□ -1.29
LIG3P49916 AC005832.2-201ENST00000538921 1430 ntBASIC6.96□□□□□ -1.3
LIG3P49916 DEFB1-201ENST00000297439 478 ntAPPRIS P1 TSL 1 (best) BASIC6.96□□□□□ -1.3
LIG3P49916 ATF3-201ENST00000336937 482 ntTSL 1 (best) BASIC6.96□□□□□ -1.3
LIG3P49916 OR52B6-201ENST00000345043 1008 ntAPPRIS P1 BASIC6.96□□□□□ -1.3
LIG3P49916 TMEM225-201ENST00000375026 1107 ntAPPRIS P2 TSL 1 (best) BASIC6.96□□□□□ -1.3
LIG3P49916 TRGV8-201ENST00000390343 468 ntAPPRIS P1 BASIC6.96□□□□□ -1.3
LIG3P49916 VDAC2P1-201ENST00000399358 958 ntBASIC6.96□□□□□ -1.3
LIG3P49916 ATXN10-203ENST00000402380 564 ntTSL 4 BASIC6.96□□□□□ -1.3
LIG3P49916 FABP6-202ENST00000402432 572 ntAPPRIS P1 TSL 1 (best) BASIC6.96□□□□□ -1.3
Retrieved 100 of 98,524 protein–RNA pairs in 66.8 ms