Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 AF130359.1-201ENST00000444868 438 ntTSL 3 BASIC5.03□□□□□ -1.6
SDC1P18827 AL731574.1-201ENST00000447757 456 ntTSL 5 BASIC5.03□□□□□ -1.6
SDC1P18827 AL034380.1-201ENST00000448791 306 ntTSL 3 BASIC5.03□□□□□ -1.6
SDC1P18827 LINC02541-202ENST00000452675 465 ntTSL 5 BASIC5.03□□□□□ -1.6
SDC1P18827 OR7L1P-201ENST00000456181 380 ntBASIC5.03□□□□□ -1.6
SDC1P18827 AC073486.1-202ENST00000458437 489 ntTSL 3 BASIC5.03□□□□□ -1.6
SDC1P18827 ENPP7P11-201ENST00000505915 627 ntBASIC5.03□□□□□ -1.6
SDC1P18827 GOLGA5P1-201ENST00000507317 980 ntBASIC5.03□□□□□ -1.6
SDC1P18827 TBCA-207ENST00000520039 157 ntTSL 3 BASIC5.03□□□□□ -1.6
SDC1P18827 MTND2P17-201ENST00000550281 688 ntBASIC5.03□□□□□ -1.6
SDC1P18827 LINC02402-201ENST00000550337 1212 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
SDC1P18827 AC018767.2-201ENST00000562361 600 ntTSL 5 BASIC5.03□□□□□ -1.6
SDC1P18827 AC105020.2-201ENST00000564683 572 ntTSL 5 BASIC5.03□□□□□ -1.6
SDC1P18827 AP000897.2-201ENST00000579509 1057 ntTSL 3 BASIC5.03□□□□□ -1.6
SDC1P18827 AC127024.5-201ENST00000580085 462 ntBASIC5.03□□□□□ -1.6
SDC1P18827 GMFG-202ENST00000594700 397 ntTSL 2 BASIC5.03□□□□□ -1.6
SDC1P18827 TMSB15B-207ENST00000598087 947 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
SDC1P18827 AC008814.1-201ENST00000603797 406 ntBASIC5.03□□□□□ -1.6
SDC1P18827 FO393422.1-201ENST00000603908 708 ntBASIC5.03□□□□□ -1.6
SDC1P18827 AL713998.2-201ENST00000604538 1198 ntBASIC5.03□□□□□ -1.6
SDC1P18827 AC009597.2-201ENST00000604659 592 ntBASIC5.03□□□□□ -1.6
SDC1P18827 AC096586.2-201ENST00000610260 441 ntBASIC5.03□□□□□ -1.6
SDC1P18827 MILR1-204ENST00000616498 747 ntAPPRIS ALT2 TSL 1 (best) BASIC5.03□□□□□ -1.6
SDC1P18827 AC243960.7-201ENST00000623532 707 ntBASIC5.03□□□□□ -1.6
SDC1P18827 LINC01685-203ENST00000634464 1201 ntTSL 5 BASIC5.03□□□□□ -1.6
SDC1P18827 AC063952.1-204ENST00000635496 927 ntTSL 5 BASIC5.03□□□□□ -1.6
SDC1P18827 MYOCOS-202ENST00000636788 1039 ntAPPRIS ALT2 TSL 5 BASIC5.03□□□□□ -1.6
SDC1P18827 WDHD1-201ENST00000360586 5996 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
SDC1P18827 GLYATL1-202ENST00000317391 1627 ntAPPRIS ALT2 TSL 1 (best) BASIC5.03□□□□□ -1.6
SDC1P18827 ADAM29-213ENST00000615367 3386 ntAPPRIS P1 TSL 5 BASIC5.03□□□□□ -1.6
SDC1P18827 RCOR3-201ENST00000367005 4246 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
SDC1P18827 LINC00504-201ENST00000505089 4672 ntTSL 2 BASIC5.03□□□□□ -1.6
SDC1P18827 IPCEF1-203ENST00000422970 3267 ntAPPRIS ALT2 TSL 1 (best) BASIC5.03□□□□□ -1.6
SDC1P18827 MTCO1P22-201ENST00000604619 1360 ntBASIC5.03□□□□□ -1.6
SDC1P18827 OR4K1-203ENST00000641429 1358 ntAPPRIS P1 BASIC5.03□□□□□ -1.6
SDC1P18827 PRUNE2-207ENST00000428286 12437 ntTSL 5 BASIC5.03□□□□□ -1.61
SDC1P18827 PEAK1-201ENST00000312493 11512 ntAPPRIS P1 TSL 5 BASIC5.02□□□□□ -1.61
SDC1P18827 CASC19-201ENST00000500112 5735 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
SDC1P18827 MYBPC1-205ENST00000536007 3512 ntAPPRIS ALT2 TSL 1 (best) BASIC5.02□□□□□ -1.61
SDC1P18827 MYBPC1-206ENST00000541119 3533 ntAPPRIS ALT2 TSL 1 (best) BASIC5.02□□□□□ -1.61
SDC1P18827 AL023755.1-201ENST00000441851 1801 ntTSL 2 BASIC5.02□□□□□ -1.61
SDC1P18827 ZNF334-203ENST00000593880 2635 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
SDC1P18827 AC139769.2-201ENST00000599944 2291 ntTSL 2 BASIC5.02□□□□□ -1.61
SDC1P18827 C5-201ENST00000223642 5465 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
SDC1P18827 MYO3A-203ENST00000376302 2723 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
SDC1P18827 NAP1L4P1-201ENST00000319092 1157 ntBASIC5.02□□□□□ -1.61
SDC1P18827 UQCR10-201ENST00000330029 916 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
SDC1P18827 RNU1-146P-201ENST00000364015 165 ntBASIC5.02□□□□□ -1.61
SDC1P18827 RCAN3-201ENST00000374393 382 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
SDC1P18827 EFCAB9-201ENST00000398186 702 ntAPPRIS P1 TSL 3 BASIC5.02□□□□□ -1.61
SDC1P18827 TFPI-204ENST00000409676 1119 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
SDC1P18827 HMGN2P27-201ENST00000427352 270 ntBASIC5.02□□□□□ -1.61
SDC1P18827 DSTNP5-201ENST00000427921 523 ntBASIC5.02□□□□□ -1.61
SDC1P18827 AC012075.1-201ENST00000436549 580 ntBASIC5.02□□□□□ -1.61
SDC1P18827 GAPDHP58-201ENST00000438477 1006 ntBASIC5.02□□□□□ -1.61
SDC1P18827 AC003685.1-201ENST00000440430 466 ntTSL 2 BASIC5.02□□□□□ -1.61
SDC1P18827 AP000281.1-201ENST00000444036 316 ntBASIC5.02□□□□□ -1.61
SDC1P18827 KCNMB2-AS1-205ENST00000451742 844 ntTSL 4 BASIC5.02□□□□□ -1.61
SDC1P18827 LINC01780-202ENST00000457683 391 ntTSL 3 BASIC5.02□□□□□ -1.61
SDC1P18827 LRRC77P-202ENST00000463642 457 ntTSL 4 BASIC5.02□□□□□ -1.61
SDC1P18827 RPL35AP19-201ENST00000469425 329 ntBASIC5.02□□□□□ -1.61
SDC1P18827 NIFKP7-201ENST00000503365 834 ntBASIC5.02□□□□□ -1.61
SDC1P18827 ASNSP4-201ENST00000511103 447 ntBASIC5.02□□□□□ -1.61
SDC1P18827 AC124854.1-201ENST00000512210 511 ntTSL 3 BASIC5.02□□□□□ -1.61
SDC1P18827 LINC02117-201ENST00000513673 540 ntTSL 4 BASIC5.02□□□□□ -1.61
SDC1P18827 AZIN1-AS1-203ENST00000517996 756 ntTSL 3 BASIC5.02□□□□□ -1.61
SDC1P18827 HMGB1P40-201ENST00000525121 540 ntBASIC5.02□□□□□ -1.61
SDC1P18827 AC131532.1-201ENST00000555596 519 ntTSL 4 BASIC5.02□□□□□ -1.61
SDC1P18827 AF107885.2-202ENST00000557653 448 ntTSL 5 BASIC5.02□□□□□ -1.61
SDC1P18827 UBL5-207ENST00000590068 390 ntAPPRIS P1 TSL 5 BASIC5.02□□□□□ -1.61
SDC1P18827 AC006363.1-201ENST00000603806 463 ntBASIC5.02□□□□□ -1.61
SDC1P18827 TULP3P1-203ENST00000606237 586 ntTSL 4 BASIC5.02□□□□□ -1.61
SDC1P18827 AC010245.2-201ENST00000606908 1167 ntBASIC5.02□□□□□ -1.61
SDC1P18827 RNA5SP440-201ENST00000612665 119 ntBASIC5.02□□□□□ -1.61
SDC1P18827 RN7SL787P-201ENST00000613000 284 ntBASIC5.02□□□□□ -1.61
SDC1P18827 HOTTIP_3.1-201ENST00000619957 337 ntBASIC5.02□□□□□ -1.61
SDC1P18827 AC005972.4-201ENST00000636248 1131 ntTSL 5 BASIC5.02□□□□□ -1.61
SDC1P18827 AC011287.1-204ENST00000640300 1213 ntTSL 5 BASIC5.02□□□□□ -1.61
SDC1P18827 KMO-203ENST00000366558 1868 ntAPPRIS ALT2 TSL 1 (best) BASIC5.02□□□□□ -1.61
SDC1P18827 HMMR-203ENST00000393915 3102 ntAPPRIS ALT2 TSL 1 (best) BASIC5.02□□□□□ -1.61
SDC1P18827 MYBPC1-201ENST00000361466 3899 ntAPPRIS P4 TSL 1 (best) BASIC5.02□□□□□ -1.61
SDC1P18827 CCDC178-202ENST00000383096 3391 ntAPPRIS ALT2 TSL 5 BASIC5.02□□□□□ -1.61
SDC1P18827 BTG4-203ENST00000525791 1394 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
SDC1P18827 UACA-211ENST00000560441 4723 ntAPPRIS ALT2 TSL 5 BASIC5.02□□□□□ -1.61
SDC1P18827 NUF2-202ENST00000367900 1842 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
SDC1P18827 AC116158.1-201ENST00000560231 2129 ntBASIC5.02□□□□□ -1.61
SDC1P18827 VSNL1-203ENST00000406397 2725 ntAPPRIS P1 TSL 5 BASIC5.02□□□□□ -1.61
SDC1P18827 TRPC4-203ENST00000358477 2955 ntTSL 1 (best) BASIC5.01□□□□□ -1.61
SDC1P18827 LINC01677-205ENST00000635636 2362 ntTSL 5 BASIC5.01□□□□□ -1.61
SDC1P18827 CALCOCO2-204ENST00000448105 1916 ntTSL 2 BASIC5.01□□□□□ -1.61
SDC1P18827 TNRC6B-202ENST00000335727 17933 ntTSL 1 (best) BASIC5.01□□□□□ -1.61
SDC1P18827 STXBP4-202ENST00000398391 2160 ntTSL 1 (best) BASIC5.01□□□□□ -1.61
SDC1P18827 MAP3K7-201ENST00000369320 3328 ntTSL 5 BASIC5.01□□□□□ -1.61
SDC1P18827 BACH1-202ENST00000399921 5769 ntAPPRIS P1 TSL 1 (best) BASIC5.01□□□□□ -1.61
SDC1P18827 GRAMD1C-208ENST00000472026 1876 ntTSL 2 BASIC5.01□□□□□ -1.61
SDC1P18827 ZNF616-204ENST00000600228 4335 ntAPPRIS P1 TSL 1 (best) BASIC5.01□□□□□ -1.61
SDC1P18827 SLC1A3-201ENST00000265113 4170 ntAPPRIS P1 TSL 1 (best) BASIC5.01□□□□□ -1.61
SDC1P18827 SELL-201ENST00000236147 2436 ntAPPRIS P1 TSL 1 (best) BASIC5.01□□□□□ -1.61
SDC1P18827 RNA5SP223-201ENST00000365174 120 ntBASIC5.01□□□□□ -1.61
SDC1P18827 BPHL-201ENST00000380368 797 ntTSL 5 BASIC5.01□□□□□ -1.61
Retrieved 100 of 98,524 protein–RNA pairs in 117.3 ms