Protein–RNA interactions for Protein: H3BT56

CHKB-CPT1B, CHKB-CPT1B readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 60 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHKB-CPT1BH3BT56 MGAT4D-201ENST00000503109 1281 ntAPPRIS ALT2 TSL 5 BASIC2.82□□□□□ -1.96
CHKB-CPT1BH3BT56 AC093870.1-201ENST00000506837 213 ntBASIC2.82□□□□□ -1.96
CHKB-CPT1BH3BT56 CENPK-210ENST00000510354 1124 ntTSL 5 BASIC2.82□□□□□ -1.96
CHKB-CPT1BH3BT56 LINC02196-201ENST00000512838 568 ntTSL 4 BASIC2.82□□□□□ -1.96
CHKB-CPT1BH3BT56 RN7SKP242-201ENST00000515967 289 ntBASIC2.82□□□□□ -1.96
CHKB-CPT1BH3BT56 RN7SKP196-201ENST00000516267 345 ntBASIC2.82□□□□□ -1.96
CHKB-CPT1BH3BT56 snoU109.6-201ENST00000516831 118 ntBASIC2.82□□□□□ -1.96
CHKB-CPT1BH3BT56 AC069113.2-201ENST00000517735 359 ntTSL 3 BASIC2.82□□□□□ -1.96
CHKB-CPT1BH3BT56 AC016885.1-201ENST00000517796 532 ntTSL 4 BASIC2.82□□□□□ -1.96
CHKB-CPT1BH3BT56 AC084768.1-201ENST00000518926 923 ntTSL 3 BASIC2.82□□□□□ -1.96
CHKB-CPT1BH3BT56 AC090150.1-201ENST00000521408 585 ntTSL 4 BASIC2.82□□□□□ -1.96
CHKB-CPT1BH3BT56 AC110056.1-201ENST00000525759 911 ntBASIC2.82□□□□□ -1.96
CHKB-CPT1BH3BT56 AC116535.2-201ENST00000532365 441 ntTSL 5 BASIC2.82□□□□□ -1.96
CHKB-CPT1BH3BT56 CDKN3-206ENST00000541304 1070 ntTSL 2 BASIC2.82□□□□□ -1.96
CHKB-CPT1BH3BT56 AC073896.2-202ENST00000549860 437 ntTSL 2 BASIC2.82□□□□□ -1.96
CHKB-CPT1BH3BT56 BICD1-206ENST00000551086 423 ntTSL 3 BASIC2.82□□□□□ -1.96
CHKB-CPT1BH3BT56 OR4N2-203ENST00000557677 1008 ntAPPRIS P1 BASIC2.82□□□□□ -1.96
CHKB-CPT1BH3BT56 LINC00687-203ENST00000558175 696 ntTSL 3 BASIC2.82□□□□□ -1.96
CHKB-CPT1BH3BT56 AC013489.1-201ENST00000561140 598 ntTSL 3 BASIC2.82□□□□□ -1.96
CHKB-CPT1BH3BT56 ATP5J2P6-201ENST00000565203 266 ntBASIC2.82□□□□□ -1.96
CHKB-CPT1BH3BT56 MTND6P33-201ENST00000571794 183 ntBASIC2.82□□□□□ -1.96
CHKB-CPT1BH3BT56 AL121834.1-201ENST00000572284 509 ntBASIC2.82□□□□□ -1.96
CHKB-CPT1BH3BT56 AF001548.1-201ENST00000577048 550 ntTSL 4 BASIC2.82□□□□□ -1.96
CHKB-CPT1BH3BT56 MIR1273F-201ENST00000580581 99 ntBASIC2.82□□□□□ -1.96
CHKB-CPT1BH3BT56 MIR4260-201ENST00000583107 67 ntBASIC2.82□□□□□ -1.96
CHKB-CPT1BH3BT56 AC100863.1-201ENST00000584843 560 ntTSL 4 BASIC2.82□□□□□ -1.96
CHKB-CPT1BH3BT56 OR7E19P-202ENST00000589942 844 ntBASIC2.82□□□□□ -1.96
CHKB-CPT1BH3BT56 LINC01676-204ENST00000595309 871 ntTSL 5 BASIC2.82□□□□□ -1.96
CHKB-CPT1BH3BT56 AC010618.3-202ENST00000598141 476 ntTSL 3 BASIC2.82□□□□□ -1.96
CHKB-CPT1BH3BT56 MIR663AHG-218ENST00000598448 804 ntTSL 5 BASIC2.82□□□□□ -1.96
CHKB-CPT1BH3BT56 AL132655.1-201ENST00000601795 1153 ntTSL 3 BASIC2.82□□□□□ -1.96
CHKB-CPT1BH3BT56 AL139395.1-201ENST00000603662 160 ntBASIC2.82□□□□□ -1.96
CHKB-CPT1BH3BT56 AC009027.1-201ENST00000604510 479 ntBASIC2.82□□□□□ -1.96
CHKB-CPT1BH3BT56 AC145423.1-201ENST00000605712 336 ntBASIC2.82□□□□□ -1.96
CHKB-CPT1BH3BT56 AL356056.3-201ENST00000605984 551 ntTSL 3 BASIC2.82□□□□□ -1.96
CHKB-CPT1BH3BT56 Metazoa_SRP.189-201ENST00000614219 303 ntBASIC2.82□□□□□ -1.96
CHKB-CPT1BH3BT56 DEC1-204ENST00000614246 210 ntAPPRIS ALT2 TSL 1 (best) BASIC2.82□□□□□ -1.96
CHKB-CPT1BH3BT56 AL035461.2-201ENST00000619201 524 ntBASIC2.82□□□□□ -1.96
CHKB-CPT1BH3BT56 AC090099.1-204ENST00000623626 849 ntBASIC2.82□□□□□ -1.96
CHKB-CPT1BH3BT56 AC012100.3-201ENST00000624738 575 ntBASIC2.82□□□□□ -1.96
CHKB-CPT1BH3BT56 VIPR1-AS1-223ENST00000627073 451 ntTSL 5 BASIC2.82□□□□□ -1.96
CHKB-CPT1BH3BT56 AL078581.3-201ENST00000627304 744 ntTSL 5 BASIC2.82□□□□□ -1.96
CHKB-CPT1BH3BT56 CHRM3-AS2-209ENST00000628573 766 ntTSL 5 BASIC2.82□□□□□ -1.96
CHKB-CPT1BH3BT56 AL672167.1-203ENST00000641299 2975 ntBASIC2.82□□□□□ -1.96
CHKB-CPT1BH3BT56 MARK2P15-201ENST00000432204 2186 ntBASIC2.82□□□□□ -1.96
CHKB-CPT1BH3BT56 AL121985.1-201ENST00000598917 1308 ntTSL 5 BASIC2.82□□□□□ -1.96
CHKB-CPT1BH3BT56 RANBP3L-202ENST00000502994 2278 ntAPPRIS ALT1 TSL 2 BASIC2.82□□□□□ -1.96
CHKB-CPT1BH3BT56 ZNF675-201ENST00000359788 2301 ntAPPRIS P1 TSL 1 (best) BASIC2.82□□□□□ -1.96
CHKB-CPT1BH3BT56 ERBB4-203ENST00000402597 11699 ntTSL 1 (best) BASIC2.82□□□□□ -1.96
CHKB-CPT1BH3BT56 AL157895.1-201ENST00000451713 1404 ntTSL 1 (best) BASIC2.82□□□□□ -1.96
CHKB-CPT1BH3BT56 ARHGAP28-202ENST00000314319 5415 ntAPPRIS P2 TSL 5 BASIC2.82□□□□□ -1.96
CHKB-CPT1BH3BT56 MTCO1P28-201ENST00000574177 1528 ntBASIC2.82□□□□□ -1.96
CHKB-CPT1BH3BT56 HMBOX1-206ENST00000519047 1551 ntTSL 5 BASIC2.82□□□□□ -1.96
CHKB-CPT1BH3BT56 PRUNE2-201ENST00000223609 2697 ntTSL 2 BASIC2.82□□□□□ -1.96
CHKB-CPT1BH3BT56 DST-201ENST00000244364 16742 ntTSL 1 (best) BASIC2.82□□□□□ -1.96
CHKB-CPT1BH3BT56 C8orf34-AS1-201ENST00000512294 1600 ntTSL 1 (best) BASIC2.82□□□□□ -1.96
CHKB-CPT1BH3BT56 CACNB4-260ENST00000637762 3800 ntTSL 5 BASIC2.82□□□□□ -1.96
CHKB-CPT1BH3BT56 LIPI-201ENST00000344577 1652 ntAPPRIS P2 TSL 1 (best) BASIC2.82□□□□□ -1.96
CHKB-CPT1BH3BT56 CCSER1-201ENST00000432775 3927 ntTSL 1 (best) BASIC2.82□□□□□ -1.96
CHKB-CPT1BH3BT56 CRISP1-201ENST00000329411 1709 ntTSL 5 BASIC2.82□□□□□ -1.96
CHKB-CPT1BH3BT56 AKAP6-201ENST00000280979 15006 ntAPPRIS P1 TSL 1 (best) BASIC2.81□□□□□ -1.96
CHKB-CPT1BH3BT56 AC107021.2-201ENST00000567714 2095 ntBASIC2.81□□□□□ -1.96
CHKB-CPT1BH3BT56 AL031320.2-201ENST00000591892 2079 ntTSL 5 BASIC2.81□□□□□ -1.96
CHKB-CPT1BH3BT56 AL121950.1-201ENST00000624993 2077 ntBASIC2.81□□□□□ -1.96
CHKB-CPT1BH3BT56 TOPORSLP1-201ENST00000467693 2102 ntBASIC2.81□□□□□ -1.96
CHKB-CPT1BH3BT56 RAPH1-203ENST00000374493 3909 ntAPPRIS ALT2 TSL 5 BASIC2.81□□□□□ -1.96
CHKB-CPT1BH3BT56 SYNE1-207ENST00000367255 27748 ntAPPRIS P4 TSL 1 (best) BASIC2.81□□□□□ -1.96
CHKB-CPT1BH3BT56 PPP1R9A-201ENST00000289495 3983 ntTSL 1 (best) BASIC2.81□□□□□ -1.96
CHKB-CPT1BH3BT56 LEKR1-201ENST00000356539 2572 ntAPPRIS P1 TSL 5 BASIC2.81□□□□□ -1.96
CHKB-CPT1BH3BT56 HERC4-204ENST00000395198 4445 ntAPPRIS ALT1 TSL 1 (best) BASIC2.81□□□□□ -1.96
CHKB-CPT1BH3BT56 AC024940.1-203ENST00000398963 4423 ntAPPRIS ALT2 TSL 5 BASIC2.81□□□□□ -1.96
CHKB-CPT1BH3BT56 PHF3-202ENST00000393387 6947 ntAPPRIS P1 TSL 1 (best) BASIC2.81□□□□□ -1.96
CHKB-CPT1BH3BT56 AC103591.2-201ENST00000265259 766 ntBASIC2.81□□□□□ -1.96
CHKB-CPT1BH3BT56 C12orf45-201ENST00000280749 459 ntTSL 3 BASIC2.81□□□□□ -1.96
CHKB-CPT1BH3BT56 AHSP-201ENST00000302312 524 ntAPPRIS P1 TSL 1 (best) BASIC2.81□□□□□ -1.96
CHKB-CPT1BH3BT56 DSCR8-201ENST00000357704 552 ntAPPRIS P5 TSL 2 BASIC2.81□□□□□ -1.96
CHKB-CPT1BH3BT56 SVBP-201ENST00000372521 658 ntAPPRIS P1 TSL 1 (best) BASIC2.81□□□□□ -1.96
CHKB-CPT1BH3BT56 AC019178.1-201ENST00000392337 440 ntBASIC2.81□□□□□ -1.96
CHKB-CPT1BH3BT56 DSCR8-202ENST00000400477 534 ntAPPRIS ALT2 TSL 1 (best) BASIC2.81□□□□□ -1.96
CHKB-CPT1BH3BT56 BTBD9-203ENST00000403056 1155 ntTSL 5 BASIC2.81□□□□□ -1.96
CHKB-CPT1BH3BT56 AL139100.1-201ENST00000408001 498 ntBASIC2.81□□□□□ -1.96
CHKB-CPT1BH3BT56 KCNJ13-202ENST00000409779 1099 ntTSL 2 BASIC2.81□□□□□ -1.96
CHKB-CPT1BH3BT56 RN7SKP194-201ENST00000411328 351 ntBASIC2.81□□□□□ -1.96
CHKB-CPT1BH3BT56 AC079163.1-201ENST00000418416 407 ntTSL 2 BASIC2.81□□□□□ -1.96
CHKB-CPT1BH3BT56 AC022173.1-201ENST00000418554 577 ntTSL 4 BASIC2.81□□□□□ -1.96
CHKB-CPT1BH3BT56 AC004448.2-201ENST00000422360 586 ntBASIC2.81□□□□□ -1.96
CHKB-CPT1BH3BT56 AC093107.1-201ENST00000422772 609 ntBASIC2.81□□□□□ -1.96
CHKB-CPT1BH3BT56 AL929288.1-201ENST00000426262 746 ntTSL 3 BASIC2.81□□□□□ -1.96
CHKB-CPT1BH3BT56 TXNDC12-AS1-201ENST00000428794 391 ntTSL 3 BASIC2.81□□□□□ -1.96
CHKB-CPT1BH3BT56 AL158835.2-201ENST00000430970 300 ntTSL 2 BASIC2.81□□□□□ -1.96
CHKB-CPT1BH3BT56 RPS29P14-201ENST00000431518 171 ntBASIC2.81□□□□□ -1.96
CHKB-CPT1BH3BT56 AL353597.2-202ENST00000434901 373 ntBASIC2.81□□□□□ -1.96
CHKB-CPT1BH3BT56 AC046176.1-201ENST00000435260 1170 ntBASIC2.81□□□□□ -1.96
CHKB-CPT1BH3BT56 AC068058.1-201ENST00000435782 389 ntTSL 5 BASIC2.81□□□□□ -1.96
CHKB-CPT1BH3BT56 LINC01508-202ENST00000436671 755 ntTSL 3 BASIC2.81□□□□□ -1.96
CHKB-CPT1BH3BT56 AL355306.2-209ENST00000437803 357 ntTSL 2 BASIC2.81□□□□□ -1.96
CHKB-CPT1BH3BT56 SEPT14P12-201ENST00000442280 560 ntBASIC2.81□□□□□ -1.96
CHKB-CPT1BH3BT56 MTOR-AS1-202ENST00000445982 705 ntTSL 5 BASIC2.81□□□□□ -1.96
CHKB-CPT1BH3BT56 AL590764.1-201ENST00000450860 726 ntTSL 3 BASIC2.81□□□□□ -1.96
CHKB-CPT1BH3BT56 AL133351.3-201ENST00000454998 193 ntBASIC2.81□□□□□ -1.96
Retrieved 100 of 98,524 protein–RNA pairs in 100.9 ms